Wall clock time and date at job start Tue Mar 31 2020 03:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47326 * 2 1 4 4 S 1.81404 * 109.46993 * 120.00292 * 2 1 3 5 5 O 1.42097 * 108.57684 * 305.50913 * 4 2 1 6 6 O 1.42109 * 108.57608 * 174.48386 * 4 2 1 7 7 C 1.81399 * 101.92211 * 59.99983 * 4 2 1 8 8 C 1.50700 * 109.47205 * 180.02562 * 7 4 2 9 9 O 1.21288 * 119.99508 * 359.97438 * 8 7 4 10 10 N 1.34775 * 120.00217 * 180.02562 * 8 7 4 11 11 C 1.46928 * 120.62932 * 359.97291 * 10 8 7 12 12 C 1.53187 * 108.77625 * 126.41524 * 11 10 8 13 13 C 1.53046 * 109.31363 * 54.63376 * 12 11 10 14 14 C 1.53046 * 109.53579 * 298.63645 * 13 12 11 15 15 H 1.08995 * 109.49499 * 301.40973 * 14 13 12 16 16 C 1.50700 * 109.49623 * 181.31259 * 14 13 12 17 17 H 1.07996 * 120.00534 * 240.00313 * 16 14 13 18 18 C 1.37878 * 119.99817 * 59.99951 * 16 14 13 19 19 N 1.31514 * 120.00036 * 0.02562 * 18 16 14 20 20 Si 1.86798 * 120.00058 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47137 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47414 * 120.00165 * 20 18 16 23 23 H 1.48506 * 109.47166 * 239.99986 * 20 18 16 24 24 C 1.46921 * 120.63131 * 179.97438 * 10 8 7 25 25 H 1.08998 * 109.46908 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46594 * 299.99851 * 1 2 3 27 27 H 1.08995 * 109.46882 * 59.99502 * 1 2 3 28 28 H 1.09008 * 109.46873 * 240.00103 * 2 1 3 29 29 H 1.08994 * 109.47016 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47107 * 300.00123 * 3 2 1 31 31 H 1.08994 * 109.46924 * 60.00098 * 3 2 1 32 32 H 1.09001 * 109.47504 * 59.99850 * 7 4 2 33 33 H 1.09003 * 109.47015 * 299.99751 * 7 4 2 34 34 H 1.09000 * 109.58351 * 246.20638 * 11 10 8 35 35 H 1.09002 * 109.58642 * 6.48295 * 11 10 8 36 36 H 1.09001 * 109.49833 * 294.68424 * 12 11 10 37 37 H 1.08996 * 109.49835 * 174.58430 * 12 11 10 38 38 H 1.08993 * 109.46296 * 178.61734 * 13 12 11 39 39 H 1.09000 * 109.45696 * 58.65290 * 13 12 11 40 40 H 0.97001 * 119.99878 * 179.97438 * 19 18 16 41 41 H 1.08996 * 109.58905 * 113.79723 * 24 10 8 42 42 H 1.09008 * 109.58585 * 353.36923 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 16 2.1347 -0.8552 1.4811 5 8 1.5480 -0.2495 2.6248 6 8 3.5497 -0.9573 1.3990 7 6 1.4229 -2.5109 1.2746 8 6 1.8270 -3.3800 2.4376 9 8 2.5267 -2.9272 3.3187 10 7 1.4117 -4.6608 2.4980 11 6 0.5642 -5.2237 1.4380 12 6 1.2187 -6.5047 0.9115 13 6 1.4790 -7.4575 2.0806 14 6 2.4382 -6.7981 3.0743 15 1 3.3710 -6.5486 2.5686 16 6 2.7193 -7.7494 4.2088 17 1 2.4692 -7.4708 5.2218 18 6 3.2957 -8.9756 3.9536 19 7 3.6008 -9.3148 2.7201 20 14 3.6435 -10.1551 5.3597 21 1 3.2108 -9.5401 6.6402 22 1 2.8975 -11.4202 5.1406 23 1 5.0994 -10.4425 5.4162 24 6 1.7979 -5.5206 3.6250 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5139 -0.8901 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.7894 -2.9509 0.3472 33 1 0.3360 -2.4371 1.2372 34 1 -0.4208 -5.4563 1.8427 35 1 0.4650 -4.5017 0.6274 36 1 2.1630 -6.2579 0.4262 37 1 0.5541 -6.9840 0.1928 38 1 1.9223 -8.3799 1.7056 39 1 0.5375 -7.6844 2.5807 40 1 4.0066 -10.1774 2.5405 41 1 0.9137 -5.7775 4.2084 42 1 2.5148 -4.9955 4.2563 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597911033.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:39 Heat of formation + Delta-G solvation = -143.722848 kcal Electronic energy + Delta-G solvation = -23784.705286 eV Core-core repulsion = 20276.701751 eV Total energy + Delta-G solvation = -3508.003535 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.134 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.26381 -38.57946 -38.06326 -37.03124 -35.96926 -35.46027 -33.28640 -32.43488 -31.01987 -28.16380 -27.02164 -26.03572 -23.62270 -23.36969 -21.85273 -20.06731 -19.63967 -18.85153 -18.29206 -17.67122 -17.50694 -17.12829 -16.62327 -16.28244 -16.11067 -15.44369 -15.13876 -14.95186 -14.72673 -14.25205 -14.20409 -14.13266 -14.00961 -13.63461 -13.51520 -13.17355 -13.11178 -13.00519 -12.90929 -12.75900 -12.61870 -12.33993 -12.30294 -12.11881 -11.90173 -11.79123 -11.66472 -11.41742 -11.12441 -11.07292 -10.80788 -10.45619 -9.63156 -8.13619 -6.28477 -1.11809 1.35399 1.38017 1.40895 1.51947 1.76221 1.87545 2.41180 2.75554 3.01439 3.13205 3.31425 3.61994 3.66121 3.98451 4.03178 4.20837 4.23988 4.24564 4.30929 4.50704 4.57402 4.66485 4.68382 4.77779 4.81109 4.84226 4.92263 4.95082 5.09458 5.14497 5.22381 5.31298 5.41494 5.51943 5.59583 5.90842 6.11315 6.31728 6.33540 6.79495 6.92657 7.39706 8.90321 Molecular weight = 303.13amu Principal moments of inertia in cm(-1) A = 0.031665 B = 0.003468 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.047298 B = 8072.428265 C = 8450.290078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.537 4.537 3 C -0.158 4.158 4 S 2.417 3.583 5 O -0.972 6.972 6 O -0.984 6.984 7 C -0.645 4.645 8 C 0.518 3.482 9 O -0.599 6.599 10 N -0.594 5.594 11 C 0.099 3.901 12 C -0.130 4.130 13 C -0.108 4.108 14 C 0.039 3.961 15 H -0.014 1.014 16 C -0.540 4.540 17 H 0.051 0.949 18 C 0.017 3.983 19 N -0.911 5.911 20 Si 0.955 3.045 21 H -0.270 1.270 22 H -0.273 1.273 23 H -0.283 1.283 24 C 0.123 3.877 25 H 0.098 0.902 26 H 0.068 0.932 27 H 0.107 0.893 28 H 0.178 0.822 29 H 0.065 0.935 30 H 0.116 0.884 31 H 0.066 0.934 32 H 0.202 0.798 33 H 0.210 0.790 34 H 0.091 0.909 35 H 0.130 0.870 36 H 0.047 0.953 37 H 0.097 0.903 38 H 0.063 0.937 39 H 0.040 0.960 40 H 0.262 0.738 41 H 0.069 0.931 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.598 16.174 -14.339 25.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.651 4.651 3 C -0.216 4.216 4 S 2.602 3.398 5 O -0.969 6.969 6 O -0.981 6.981 7 C -0.773 4.773 8 C 0.306 3.694 9 O -0.482 6.482 10 N -0.324 5.324 11 C -0.022 4.022 12 C -0.168 4.168 13 C -0.146 4.146 14 C 0.020 3.980 15 H 0.004 0.996 16 C -0.578 4.578 17 H 0.069 0.931 18 C -0.182 4.182 19 N -0.551 5.551 20 Si 0.781 3.219 21 H -0.195 1.195 22 H -0.199 1.199 23 H -0.210 1.210 24 C 0.001 3.999 25 H 0.117 0.883 26 H 0.087 0.913 27 H 0.126 0.874 28 H 0.196 0.804 29 H 0.084 0.916 30 H 0.134 0.866 31 H 0.085 0.915 32 H 0.219 0.781 33 H 0.227 0.773 34 H 0.109 0.891 35 H 0.148 0.852 36 H 0.065 0.935 37 H 0.115 0.885 38 H 0.082 0.918 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.087 0.913 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.638 16.524 -13.264 24.174 hybrid contribution 0.514 -1.392 0.619 1.608 sum -11.124 15.132 -12.645 22.641 Atomic orbital electron populations 1.21998 0.87793 1.05956 1.05923 1.29870 1.08475 1.09079 1.17700 1.21846 1.02065 0.91832 1.05891 1.08272 0.75203 0.77472 0.78871 1.93485 1.79413 1.74773 1.49275 1.93505 1.30530 1.86200 1.87872 1.30814 1.18726 1.21103 1.06690 1.20102 0.79574 0.83159 0.86534 1.90808 1.40734 1.74014 1.42636 1.48265 1.49834 1.09787 1.24528 1.22259 0.93437 0.96414 0.90057 1.21950 1.00736 0.95936 0.98220 1.21445 0.97633 0.99814 0.95740 1.18904 0.93425 0.90927 0.94787 0.99567 1.21461 1.41052 1.01536 0.93768 0.93092 1.25676 0.95024 0.99527 0.97952 1.70003 1.42791 1.22268 1.19990 0.85546 0.77697 0.78912 0.79734 1.19477 1.19889 1.20951 1.21685 0.99140 0.91107 0.87983 0.88313 0.91254 0.87405 0.80447 0.91556 0.86596 0.91481 0.78051 0.77345 0.89120 0.85165 0.93458 0.88471 0.91846 0.94141 0.92874 0.91256 0.93111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.81 8.94 71.98 0.64 -0.17 16 2 C -0.54 -5.40 3.31 30.60 0.10 -5.30 16 3 C -0.16 -1.80 9.20 71.98 0.66 -1.14 16 4 S 2.42 59.78 3.49 -56.49 -0.20 59.58 16 5 O -0.97 -32.29 17.76 -125.74 -2.23 -34.52 16 6 O -0.98 -34.91 17.95 -125.76 -2.26 -37.16 16 7 C -0.65 -12.28 4.18 71.24 0.30 -11.99 16 8 C 0.52 18.43 7.72 87.66 0.68 19.11 16 9 O -0.60 -28.38 15.04 -0.18 0.00 -28.38 16 10 N -0.59 -20.88 2.97 -818.99 -2.43 -23.31 16 11 C 0.10 2.37 6.34 86.36 0.55 2.92 16 12 C -0.13 -3.98 6.08 30.67 0.19 -3.80 16 13 C -0.11 -4.70 4.96 30.63 0.15 -4.55 16 14 C 0.04 1.97 2.25 -11.47 -0.03 1.94 16 15 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 16 C -0.54 -30.27 8.56 25.60 0.22 -30.06 16 17 H 0.05 2.85 7.74 -2.91 -0.02 2.82 16 18 C 0.02 0.97 5.30 84.65 0.45 1.42 16 19 N -0.91 -52.08 11.31 21.45 0.24 -51.84 16 20 Si 0.96 44.04 29.54 68.60 2.03 46.07 16 21 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 22 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 23 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 24 C 0.12 5.51 5.65 86.35 0.49 6.00 16 25 H 0.10 -0.03 6.56 -2.39 -0.02 -0.05 16 26 H 0.07 0.56 8.06 -2.39 -0.02 0.54 16 27 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 28 H 0.18 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.20 2.00 7.69 -2.39 -0.02 1.98 16 33 H 0.21 1.63 6.67 -2.39 -0.02 1.62 16 34 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.13 1.64 5.93 -2.39 -0.01 1.63 16 36 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.06 3.20 6.04 -2.39 -0.01 3.18 16 39 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 41 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 42 H 0.05 2.56 7.01 -2.38 -0.02 2.54 16 Total: -1.00 -90.98 345.45 0.54 -90.44 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: 1.00 Total: 4.73 kcal Atomic # 6 Polarization: -30.00 SS G_CDS: 4.40 Total: -25.60 kcal Atomic # 7 Polarization: -72.96 SS G_CDS: -2.19 Total: -75.15 kcal Atomic # 8 Polarization: -95.57 SS G_CDS: -4.49 Total: -100.07 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: 59.78 SS G_CDS: -0.20 Total: 59.58 kcal Total: -90.98 0.54 -90.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911033.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.287 kcal (2) G-P(sol) polarization free energy of solvation -90.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds