Wall clock time and date at job start Tue Mar 31 2020 03:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47024 * 2 1 4 4 S 1.81404 * 109.47025 * 119.99821 * 2 1 3 5 5 O 1.42101 * 108.57756 * 70.51811 * 4 2 1 6 6 O 1.42095 * 108.57856 * 299.48968 * 4 2 1 7 7 C 1.81403 * 101.92026 * 185.00311 * 4 2 1 8 8 C 1.50699 * 109.46871 * 179.97438 * 7 4 2 9 9 O 1.21281 * 120.00097 * 0.02562 * 8 7 4 10 10 N 1.34781 * 119.99906 * 179.97438 * 8 7 4 11 11 C 1.46931 * 120.62766 * 0.02562 * 10 8 7 12 12 C 1.53187 * 108.77274 * 233.60345 * 11 10 8 13 13 C 1.53049 * 109.31497 * 305.36469 * 12 11 10 14 14 C 1.53039 * 109.53353 * 61.36666 * 13 12 11 15 15 H 1.09002 * 109.49751 * 58.58726 * 14 13 12 16 16 C 1.50704 * 109.49530 * 178.65349 * 14 13 12 17 17 H 1.08000 * 120.00137 * 119.93517 * 16 14 13 18 18 C 1.37880 * 119.99774 * 299.93494 * 16 14 13 19 19 N 1.31509 * 119.99752 * 180.02562 * 18 16 14 20 20 Si 1.86805 * 119.99939 * 0.02562 * 18 16 14 21 21 H 1.48491 * 109.47121 * 90.00157 * 20 18 16 22 22 H 1.48501 * 109.46699 * 210.00014 * 20 18 16 23 23 H 1.48496 * 109.47223 * 329.99930 * 20 18 16 24 24 C 1.46925 * 120.63215 * 180.02562 * 10 8 7 25 25 H 1.08994 * 109.47320 * 300.00096 * 1 2 3 26 26 H 1.08996 * 109.46949 * 60.00517 * 1 2 3 27 27 H 1.09004 * 109.46815 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47320 * 239.99904 * 2 1 3 29 29 H 1.09001 * 109.46788 * 59.99849 * 3 2 1 30 30 H 1.09001 * 109.47337 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.46871 * 299.99920 * 3 2 1 32 32 H 1.08997 * 109.47028 * 59.99872 * 7 4 2 33 33 H 1.09000 * 109.46943 * 300.00007 * 7 4 2 34 34 H 1.09002 * 109.58421 * 113.81629 * 11 10 8 35 35 H 1.08996 * 109.58549 * 353.39409 * 11 10 8 36 36 H 1.09006 * 109.49516 * 185.41853 * 12 11 10 37 37 H 1.08993 * 109.49868 * 65.31880 * 12 11 10 38 38 H 1.08998 * 109.45961 * 301.34644 * 13 12 11 39 39 H 1.08993 * 109.45850 * 181.38486 * 13 12 11 40 40 H 0.97001 * 119.99695 * 179.97438 * 19 18 16 41 41 H 1.09005 * 109.58300 * 6.60702 * 24 10 8 42 42 H 1.08998 * 109.58651 * 246.18643 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1346 -0.8551 1.4812 5 8 1.8620 -2.2431 1.3456 6 8 1.6604 -0.1637 2.6284 7 6 3.9266 -0.6030 1.3541 8 6 4.6104 -1.2589 2.5260 9 8 3.9537 -1.8396 3.3641 10 7 5.9519 -1.2010 2.6421 11 6 6.7610 -0.5016 1.6346 12 6 7.8430 -1.4569 1.1215 13 6 8.6454 -1.9970 2.3076 14 6 7.7165 -2.7762 3.2414 15 1 7.2492 -3.5930 2.6913 16 6 8.5135 -3.3355 4.3917 17 1 8.2717 -3.0509 5.4051 18 6 9.5513 -4.2106 4.1503 19 7 10.2464 -4.6990 5.1542 20 14 9.9698 -4.7023 2.3975 21 1 10.9690 -3.7543 1.8426 22 1 10.5335 -6.0761 2.3900 23 1 8.7397 -4.6675 1.5664 24 6 6.6331 -1.8360 3.7786 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 4.1444 0.4650 1.3579 33 1 4.2907 -1.0448 0.4266 34 1 7.2298 0.3732 2.0854 35 1 6.1245 -0.1914 0.8060 36 1 8.5095 -0.9219 0.4448 37 1 7.3746 -2.2861 0.5914 38 1 9.0933 -1.1655 2.8517 39 1 9.4317 -2.6579 1.9432 40 1 10.9763 -5.3150 4.9844 41 1 5.9120 -2.4061 4.3645 42 1 7.0913 -1.0701 4.4043 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597911034.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:44 Heat of formation + Delta-G solvation = -106.919272 kcal Electronic energy + Delta-G solvation = -23897.590452 eV Core-core repulsion = 20391.182840 eV Total energy + Delta-G solvation = -3506.407612 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.134 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.00501 -37.29168 -37.09077 -36.07038 -35.46903 -33.72366 -31.94954 -31.24634 -30.06305 -27.72774 -25.17551 -24.99878 -23.00337 -21.81476 -20.44292 -18.92313 -18.67351 -17.78531 -16.84029 -16.65393 -16.54651 -16.16134 -15.43939 -15.10524 -14.78974 -14.58272 -13.96995 -13.76627 -13.64544 -13.55616 -13.22015 -13.10830 -12.80872 -12.63908 -12.56020 -12.31030 -12.10967 -12.03896 -11.89611 -11.85747 -11.59146 -11.23219 -11.15833 -10.75329 -10.47198 -10.43534 -10.22744 -10.00531 -9.89369 -9.45445 -9.09502 -8.61325 -8.29054 -6.13411 -4.13991 -0.30040 2.55034 2.55701 3.00636 3.19426 3.32393 3.34580 3.60497 3.74130 4.10937 4.16490 4.27573 4.34428 4.60028 4.70301 4.81013 4.97485 4.99839 5.08275 5.15805 5.16016 5.18942 5.29316 5.40894 5.54154 5.57974 5.70726 5.86182 5.94241 6.07054 6.25119 6.43287 6.51642 6.62165 6.71487 7.03494 7.37136 7.56040 7.66212 8.13841 8.42950 8.89779 9.47547 10.99552 Molecular weight = 303.13amu Principal moments of inertia in cm(-1) A = 0.029758 B = 0.003740 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.694898 B = 7484.059276 C = 7739.206381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.585 4.585 3 C -0.148 4.148 4 S 2.451 3.549 5 O -0.919 6.919 6 O -0.917 6.917 7 C -0.660 4.660 8 C 0.537 3.463 9 O -0.535 6.535 10 N -0.595 5.595 11 C 0.106 3.894 12 C -0.141 4.141 13 C -0.124 4.124 14 C 0.004 3.996 15 H 0.032 0.968 16 C -0.516 4.516 17 H 0.077 0.923 18 C 0.072 3.928 19 N -0.897 5.897 20 Si 0.888 3.112 21 H -0.279 1.279 22 H -0.296 1.296 23 H -0.266 1.266 24 C 0.124 3.876 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.137 0.863 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.158 0.842 33 H 0.157 0.843 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.265 0.735 41 H 0.091 0.909 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.535 14.621 -16.092 25.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.694 4.694 3 C -0.206 4.206 4 S 2.627 3.373 5 O -0.916 6.916 6 O -0.914 6.914 7 C -0.787 4.787 8 C 0.322 3.678 9 O -0.413 6.413 10 N -0.326 5.326 11 C -0.017 4.017 12 C -0.179 4.179 13 C -0.161 4.161 14 C -0.016 4.016 15 H 0.050 0.950 16 C -0.554 4.554 17 H 0.095 0.905 18 C -0.130 4.130 19 N -0.535 5.535 20 Si 0.718 3.282 21 H -0.206 1.206 22 H -0.224 1.224 23 H -0.191 1.191 24 C 0.004 3.996 25 H 0.095 0.905 26 H 0.100 0.900 27 H 0.092 0.908 28 H 0.155 0.845 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.176 0.824 33 H 0.175 0.825 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.109 0.891 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.166 13.752 -14.932 24.754 hybrid contribution 1.162 0.139 -1.861 2.199 sum -13.004 13.891 -16.793 25.379 Atomic orbital electron populations 1.21623 0.89663 1.04033 1.04715 1.30216 1.07419 1.09876 1.21863 1.21777 1.01494 0.92208 1.05121 1.07660 0.76639 0.76046 0.76938 1.93585 1.82178 1.29560 1.86304 1.93561 1.77310 1.75682 1.44880 1.30906 1.28173 1.11789 1.07878 1.19012 0.83253 0.80454 0.85087 1.90846 1.63765 1.44111 1.42576 1.48213 1.04742 1.53491 1.26175 1.21804 0.93524 0.95354 0.91002 1.22031 0.97559 0.99023 0.99313 1.22011 0.98538 1.00252 0.95327 1.19495 0.92646 0.93574 0.95864 0.94970 1.20882 1.14624 1.26653 0.93248 0.90457 1.24980 0.95782 0.95365 0.96853 1.69887 1.20949 1.31735 1.30880 0.86831 0.78811 0.76849 0.85669 1.20581 1.22397 1.19121 1.21935 0.95263 0.96228 0.86182 0.90516 0.90028 0.90830 0.84481 0.90249 0.91129 0.90149 0.82423 0.82475 0.90864 0.90519 0.91456 0.91952 0.91748 0.92995 0.92521 0.89077 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.19 37.16 0.34 -0.60 16 2 C -0.59 -3.85 3.35 -26.73 -0.09 -3.94 16 3 C -0.15 -0.70 8.90 37.16 0.33 -0.37 16 4 S 2.45 29.62 3.50 -107.50 -0.38 29.25 16 5 O -0.92 -15.00 17.95 -59.52 -1.07 -16.07 16 6 O -0.92 -14.20 17.91 -59.54 -1.07 -15.26 16 7 C -0.66 -6.85 4.03 36.01 0.15 -6.70 16 8 C 0.54 9.09 7.72 -10.98 -0.08 9.01 16 9 O -0.53 -11.47 15.04 2.55 0.04 -11.43 16 10 N -0.59 -9.98 2.97 -172.77 -0.51 -10.49 16 11 C 0.11 1.33 6.34 -3.71 -0.02 1.31 16 12 C -0.14 -2.07 6.08 -26.61 -0.16 -2.23 16 13 C -0.12 -2.43 4.66 -26.69 -0.12 -2.55 16 14 C 0.00 0.09 1.84 -91.66 -0.17 -0.08 16 15 H 0.03 0.79 7.20 -51.93 -0.37 0.41 16 16 C -0.52 -14.16 9.15 -34.44 -0.31 -14.47 16 17 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 18 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 19 N -0.90 -27.11 13.96 55.43 0.77 -26.33 16 20 Si 0.89 21.48 24.39 -169.99 -4.15 17.33 16 21 H -0.28 -6.44 6.86 56.52 0.39 -6.05 16 22 H -0.30 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.27 -6.21 6.53 56.52 0.37 -5.84 16 24 C 0.12 2.53 5.66 -3.72 -0.02 2.51 16 25 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.14 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.20 6.39 -51.93 -0.33 -0.14 16 31 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.16 0.98 6.57 -51.93 -0.34 0.63 16 33 H 0.16 1.06 7.69 -51.92 -0.40 0.67 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 0.65 5.93 -51.93 -0.31 0.34 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.05 1.10 3.26 -51.93 -0.17 0.93 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.09 2.03 7.01 -51.93 -0.36 1.67 16 42 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 338.47 15.07 5.10 5.10 Total: -1.00 -38.09 338.47 -8.06 -46.16 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -6.54 Total: -2.08 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -0.27 Total: -16.16 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.26 Total: -36.83 kcal Atomic # 8 Polarization: -40.67 SS G_CDS: -2.10 Total: -42.76 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.15 Total: 17.33 kcal Atomic # 16 Polarization: 29.62 SS G_CDS: -0.38 Total: 29.25 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -38.09 -8.06 -46.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911034.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.761 kcal (2) G-P(sol) polarization free energy of solvation -38.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds