Wall clock time and date at job start Tue Mar 31 2020 03:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47024 * 2 1 4 4 S 1.81404 * 109.47025 * 119.99821 * 2 1 3 5 5 O 1.42101 * 108.57756 * 70.51811 * 4 2 1 6 6 O 1.42095 * 108.57856 * 299.48968 * 4 2 1 7 7 C 1.81403 * 101.92026 * 185.00311 * 4 2 1 8 8 C 1.50699 * 109.46871 * 179.97438 * 7 4 2 9 9 O 1.21281 * 120.00097 * 0.02562 * 8 7 4 10 10 N 1.34781 * 119.99906 * 179.97438 * 8 7 4 11 11 C 1.46931 * 120.62766 * 0.02562 * 10 8 7 12 12 C 1.53187 * 108.77274 * 233.60345 * 11 10 8 13 13 C 1.53049 * 109.31497 * 305.36469 * 12 11 10 14 14 C 1.53039 * 109.53353 * 61.36666 * 13 12 11 15 15 H 1.09002 * 109.49751 * 58.58726 * 14 13 12 16 16 C 1.50704 * 109.49530 * 178.65349 * 14 13 12 17 17 H 1.08000 * 120.00137 * 119.93517 * 16 14 13 18 18 C 1.37880 * 119.99774 * 299.93494 * 16 14 13 19 19 N 1.31509 * 119.99752 * 180.02562 * 18 16 14 20 20 Si 1.86805 * 119.99939 * 0.02562 * 18 16 14 21 21 H 1.48491 * 109.47121 * 90.00157 * 20 18 16 22 22 H 1.48501 * 109.46699 * 210.00014 * 20 18 16 23 23 H 1.48496 * 109.47223 * 329.99930 * 20 18 16 24 24 C 1.46925 * 120.63215 * 180.02562 * 10 8 7 25 25 H 1.08994 * 109.47320 * 300.00096 * 1 2 3 26 26 H 1.08996 * 109.46949 * 60.00517 * 1 2 3 27 27 H 1.09004 * 109.46815 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47320 * 239.99904 * 2 1 3 29 29 H 1.09001 * 109.46788 * 59.99849 * 3 2 1 30 30 H 1.09001 * 109.47337 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.46871 * 299.99920 * 3 2 1 32 32 H 1.08997 * 109.47028 * 59.99872 * 7 4 2 33 33 H 1.09000 * 109.46943 * 300.00007 * 7 4 2 34 34 H 1.09002 * 109.58421 * 113.81629 * 11 10 8 35 35 H 1.08996 * 109.58549 * 353.39409 * 11 10 8 36 36 H 1.09006 * 109.49516 * 185.41853 * 12 11 10 37 37 H 1.08993 * 109.49868 * 65.31880 * 12 11 10 38 38 H 1.08998 * 109.45961 * 301.34644 * 13 12 11 39 39 H 1.08993 * 109.45850 * 181.38486 * 13 12 11 40 40 H 0.97001 * 119.99695 * 179.97438 * 19 18 16 41 41 H 1.09005 * 109.58300 * 6.60702 * 24 10 8 42 42 H 1.08998 * 109.58651 * 246.18643 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1346 -0.8551 1.4812 5 8 1.8620 -2.2431 1.3456 6 8 1.6604 -0.1637 2.6284 7 6 3.9266 -0.6030 1.3541 8 6 4.6104 -1.2589 2.5260 9 8 3.9537 -1.8396 3.3641 10 7 5.9519 -1.2010 2.6421 11 6 6.7610 -0.5016 1.6346 12 6 7.8430 -1.4569 1.1215 13 6 8.6454 -1.9970 2.3076 14 6 7.7165 -2.7762 3.2414 15 1 7.2492 -3.5930 2.6913 16 6 8.5135 -3.3355 4.3917 17 1 8.2717 -3.0509 5.4051 18 6 9.5513 -4.2106 4.1503 19 7 10.2464 -4.6990 5.1542 20 14 9.9698 -4.7023 2.3975 21 1 10.9690 -3.7543 1.8426 22 1 10.5335 -6.0761 2.3900 23 1 8.7397 -4.6675 1.5664 24 6 6.6331 -1.8360 3.7786 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 4.1444 0.4650 1.3579 33 1 4.2907 -1.0448 0.4266 34 1 7.2298 0.3732 2.0854 35 1 6.1245 -0.1914 0.8060 36 1 8.5095 -0.9219 0.4448 37 1 7.3746 -2.2861 0.5914 38 1 9.0933 -1.1655 2.8517 39 1 9.4317 -2.6579 1.9432 40 1 10.9763 -5.3150 4.9844 41 1 5.9120 -2.4061 4.3645 42 1 7.0913 -1.0701 4.4043 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597911034.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:43 Heat of formation + Delta-G solvation = -138.576229 kcal Electronic energy + Delta-G solvation = -23898.963200 eV Core-core repulsion = 20391.182840 eV Total energy + Delta-G solvation = -3507.780361 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.134 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.33496 -38.74424 -38.06857 -37.03396 -35.98631 -35.45378 -33.70811 -32.53367 -31.29765 -28.19106 -26.99622 -26.33252 -23.60447 -23.25106 -21.95782 -20.18616 -19.63895 -18.99465 -18.62198 -17.69691 -17.56988 -17.22004 -16.66001 -16.37169 -16.11358 -15.46156 -15.43827 -15.03852 -14.89513 -14.33357 -14.25719 -14.19145 -14.07195 -13.95539 -13.55421 -13.15390 -13.12387 -13.04964 -13.01950 -12.92009 -12.55972 -12.32491 -12.29027 -12.13590 -11.99495 -11.85930 -11.53118 -11.45603 -11.20881 -11.09437 -10.91581 -10.71270 -9.69666 -8.34012 -6.39951 -1.12302 1.25732 1.33713 1.35032 1.44915 1.75378 1.83090 2.29409 2.74449 3.00807 3.01452 3.29838 3.61562 3.65882 3.94381 3.97729 4.05844 4.15473 4.20245 4.24376 4.27428 4.48728 4.61604 4.66475 4.67141 4.73033 4.81260 4.86130 4.92201 4.94267 5.04614 5.13393 5.14405 5.31489 5.35652 5.35695 5.61040 5.70288 6.22019 6.28363 6.66062 6.89073 7.25622 8.82908 Molecular weight = 303.13amu Principal moments of inertia in cm(-1) A = 0.029758 B = 0.003740 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.694898 B = 7484.059276 C = 7739.206381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.537 4.537 3 C -0.160 4.160 4 S 2.414 3.586 5 O -0.984 6.984 6 O -0.974 6.974 7 C -0.645 4.645 8 C 0.520 3.480 9 O -0.598 6.598 10 N -0.596 5.596 11 C 0.097 3.903 12 C -0.137 4.137 13 C -0.124 4.124 14 C 0.006 3.994 15 H 0.014 0.986 16 C -0.526 4.526 17 H 0.031 0.969 18 C 0.011 3.989 19 N -0.949 5.949 20 Si 0.958 3.042 21 H -0.252 1.252 22 H -0.303 1.303 23 H -0.252 1.252 24 C 0.132 3.868 25 H 0.067 0.933 26 H 0.115 0.885 27 H 0.064 0.936 28 H 0.178 0.822 29 H 0.069 0.931 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.211 0.789 33 H 0.207 0.793 34 H 0.094 0.906 35 H 0.136 0.864 36 H 0.111 0.889 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.038 0.962 40 H 0.267 0.733 41 H 0.052 0.948 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.328 17.941 -21.989 31.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.651 4.651 3 C -0.218 4.218 4 S 2.600 3.400 5 O -0.981 6.981 6 O -0.971 6.971 7 C -0.773 4.773 8 C 0.308 3.692 9 O -0.480 6.480 10 N -0.327 5.327 11 C -0.024 4.024 12 C -0.174 4.174 13 C -0.162 4.162 14 C -0.013 4.013 15 H 0.032 0.968 16 C -0.565 4.565 17 H 0.049 0.951 18 C -0.186 4.186 19 N -0.589 5.589 20 Si 0.784 3.216 21 H -0.178 1.178 22 H -0.231 1.231 23 H -0.176 1.176 24 C 0.009 3.991 25 H 0.086 0.914 26 H 0.133 0.867 27 H 0.083 0.917 28 H 0.195 0.805 29 H 0.088 0.912 30 H 0.120 0.880 31 H 0.125 0.875 32 H 0.228 0.772 33 H 0.224 0.776 34 H 0.112 0.888 35 H 0.154 0.846 36 H 0.129 0.871 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.056 0.944 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.960 17.086 -20.809 30.329 hybrid contribution 1.029 -0.825 0.042 1.320 sum -12.931 16.261 -20.768 29.376 Atomic orbital electron populations 1.21848 0.89950 1.04007 1.05902 1.29869 1.06921 1.10632 1.17647 1.22035 1.03700 0.90126 1.05966 1.08317 0.77644 0.75317 0.78752 1.93506 1.83335 1.33603 1.87663 1.93490 1.78495 1.75851 1.49294 1.30826 1.25422 1.14640 1.06414 1.20118 0.83071 0.79776 0.86235 1.90830 1.65104 1.46703 1.45367 1.48266 1.05273 1.53267 1.25877 1.22310 0.93647 0.94809 0.91645 1.22041 0.98156 0.99849 0.97389 1.21886 0.97916 0.99619 0.96765 1.19370 0.93287 0.93957 0.94712 0.96836 1.21230 1.15141 1.26913 0.93177 0.95067 1.25929 0.95596 0.95280 1.01803 1.70056 1.22064 1.33067 1.33711 0.85713 0.79521 0.76414 0.79956 1.17763 1.23064 1.17580 1.21440 0.94020 0.95854 0.87748 0.91427 0.86661 0.91698 0.80464 0.91237 0.87978 0.87482 0.77208 0.77551 0.88786 0.84588 0.87055 0.92100 0.91514 0.94356 0.92412 0.92897 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.19 71.98 0.66 -0.98 16 2 C -0.54 -4.55 3.35 30.59 0.10 -4.45 16 3 C -0.16 -0.51 8.90 71.98 0.64 0.13 16 4 S 2.41 55.51 3.50 -56.49 -0.20 55.31 16 5 O -0.98 -33.13 17.95 -125.76 -2.26 -35.38 16 6 O -0.97 -31.23 17.91 -125.74 -2.25 -33.48 16 7 C -0.64 -10.44 4.03 71.24 0.29 -10.16 16 8 C 0.52 16.99 7.72 87.66 0.68 17.67 16 9 O -0.60 -27.08 15.04 -0.16 0.00 -27.08 16 10 N -0.60 -18.83 2.97 -818.92 -2.43 -21.27 16 11 C 0.10 1.85 6.34 86.36 0.55 2.40 16 12 C -0.14 -3.24 6.08 30.67 0.19 -3.05 16 13 C -0.12 -4.57 4.66 30.62 0.14 -4.43 16 14 C 0.01 0.29 1.84 -11.47 -0.02 0.27 16 15 H 0.01 0.67 7.20 -2.39 -0.02 0.65 16 16 C -0.53 -30.55 9.15 25.60 0.23 -30.31 16 17 H 0.03 2.02 7.99 -2.91 -0.02 1.99 16 18 C 0.01 0.65 5.45 84.66 0.46 1.11 16 19 N -0.95 -60.12 13.96 21.45 0.30 -59.82 16 20 Si 0.96 44.62 24.39 68.60 1.67 46.29 16 21 H -0.25 -10.63 6.86 99.48 0.68 -9.95 16 22 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 23 H -0.25 -11.00 6.53 99.48 0.65 -10.35 16 24 C 0.13 5.59 5.66 86.36 0.49 6.08 16 25 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 28 H 0.18 0.22 8.14 -2.39 -0.02 0.21 16 29 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.10 -0.29 6.39 -2.39 -0.02 -0.30 16 31 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 32 H 0.21 1.07 6.57 -2.39 -0.02 1.06 16 33 H 0.21 1.26 7.69 -2.39 -0.02 1.24 16 34 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.14 1.05 5.93 -2.39 -0.01 1.04 16 36 H 0.11 1.79 8.14 -2.38 -0.02 1.77 16 37 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.04 1.51 3.26 -2.39 -0.01 1.50 16 40 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 41 H 0.05 2.59 7.01 -2.38 -0.02 2.57 16 42 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 Total: -1.00 -97.92 338.47 0.16 -97.75 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: 0.93 Total: 3.41 kcal Atomic # 6 Polarization: -30.13 SS G_CDS: 4.41 Total: -25.73 kcal Atomic # 7 Polarization: -78.96 SS G_CDS: -2.13 Total: -81.09 kcal Atomic # 8 Polarization: -91.44 SS G_CDS: -4.51 Total: -95.95 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.67 Total: 46.29 kcal Atomic # 16 Polarization: 55.51 SS G_CDS: -0.20 Total: 55.31 kcal Total: -97.92 0.16 -97.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911034.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.823 kcal (2) G-P(sol) polarization free energy of solvation -97.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds