Wall clock time and date at job start Tue Mar 31 2020 04:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46898 * 110.99781 * 2 1 4 4 C 1.52788 * 109.42264 * 187.11492 * 3 2 1 5 5 N 1.47073 * 108.76711 * 306.43330 * 4 3 2 6 6 C 1.34780 * 120.87788 * 231.11671 * 5 4 3 7 7 O 1.21549 * 119.99688 * 184.81961 * 6 5 4 8 8 C 1.47883 * 120.00305 * 4.82680 * 6 5 4 9 9 C 1.39917 * 120.02345 * 35.58176 * 8 6 5 10 10 C 1.38332 * 120.36204 * 179.97438 * 9 8 6 11 11 C 1.37760 * 120.40432 * 359.71680 * 10 9 8 12 12 C 1.40741 * 120.04000 * 0.56156 * 11 10 9 13 13 C 1.41445 * 120.17692 * 179.71312 * 12 11 10 14 14 H 1.08000 * 119.99870 * 180.24588 * 13 12 11 15 15 C 1.39934 * 119.99893 * 0.25234 * 13 12 11 16 16 N 1.30831 * 119.99959 * 218.49221 * 15 13 12 17 17 Si 1.86798 * 120.00214 * 38.76604 * 15 13 12 18 18 H 1.48497 * 109.47178 * 263.66852 * 17 15 13 19 19 H 1.48503 * 109.46978 * 23.66383 * 17 15 13 20 20 H 1.48499 * 109.47244 * 143.66445 * 17 15 13 21 21 C 1.38991 * 120.02597 * 215.56302 * 8 6 5 22 22 C 1.47075 * 118.23989 * 50.84658 * 5 4 3 23 23 H 1.09007 * 109.62991 * 68.99758 * 22 5 4 24 24 C 1.53002 * 109.63178 * 189.37894 * 22 5 4 25 25 N 1.46894 * 109.47521 * 173.60407 * 24 22 5 26 26 C 1.46896 * 111.00488 * 124.30989 * 2 1 3 27 27 H 1.09007 * 109.46789 * 295.69264 * 1 2 3 28 28 H 1.09000 * 109.47491 * 55.68954 * 1 2 3 29 29 H 1.08999 * 109.47091 * 175.69711 * 1 2 3 30 30 H 1.09002 * 109.49948 * 307.22105 * 3 2 1 31 31 H 1.08999 * 109.49002 * 67.30512 * 3 2 1 32 32 H 1.08998 * 109.55595 * 186.61047 * 4 3 2 33 33 H 1.09008 * 109.45530 * 66.18735 * 4 3 2 34 34 H 1.07998 * 119.82517 * 0.02562 * 9 8 6 35 35 H 1.07996 * 119.79743 * 179.97438 * 10 9 8 36 36 H 1.07999 * 119.97640 * 180.29906 * 11 10 9 37 37 H 0.96995 * 119.99669 * 5.28584 * 16 15 13 38 38 H 1.07995 * 120.20604 * 0.04172 * 21 8 6 39 39 H 1.09007 * 109.47123 * 293.60505 * 24 22 5 40 40 H 1.09005 * 109.46899 * 53.60337 * 24 22 5 41 41 H 1.00908 * 111.00189 * 61.12269 * 25 24 22 42 42 H 1.00902 * 111.00442 * 185.07743 * 25 24 22 43 43 H 1.08999 * 109.49008 * 52.78473 * 26 2 1 44 44 H 1.09001 * 109.50978 * 292.71452 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5123 1.3334 -0.1785 5 7 4.0869 0.4460 0.8439 6 6 5.1057 0.8582 1.6242 7 8 5.6263 0.0839 2.4032 8 6 5.5900 2.2525 1.5326 9 6 4.6859 3.2933 1.2941 10 6 5.1312 4.6002 1.2076 11 6 6.4686 4.8927 1.3612 12 6 7.3936 3.8582 1.5959 13 6 8.7682 4.1546 1.7480 14 1 9.4761 3.3581 1.9240 15 6 9.2110 5.4798 1.6704 16 7 10.3435 5.7574 1.0772 17 14 8.1888 6.8515 2.4206 18 1 7.3466 7.4739 1.3678 19 1 7.3174 6.2937 3.4859 20 1 9.0896 7.8775 3.0047 21 6 6.9435 2.5300 1.6839 22 6 3.5164 -0.9010 0.9965 23 1 3.7591 -1.5028 0.1206 24 6 4.0908 -1.5636 2.2503 25 7 3.4080 -2.8429 2.4847 26 6 1.9955 -0.7730 1.1327 27 1 -0.3633 0.4456 0.9261 28 1 -0.3634 0.5793 -0.8488 29 1 -0.3633 -1.0248 -0.0771 30 1 1.5455 1.9338 -0.8182 31 1 1.7556 1.8530 0.9480 32 1 3.9187 2.3380 -0.0617 33 1 3.7516 0.9517 -1.1711 34 1 3.6345 3.0755 1.1775 35 1 4.4254 5.3965 1.0228 36 1 6.8079 5.9159 1.2972 37 1 10.8384 5.0567 0.6246 38 1 7.6449 1.7297 1.8679 39 1 5.1573 -1.7411 2.1114 40 1 3.9402 -0.9087 3.1086 41 1 3.5479 -3.4747 1.7105 42 1 3.7107 -3.2609 3.3517 43 1 1.5457 -1.7658 1.1359 44 1 1.7556 -0.2619 2.0651 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580655310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:43:49 Heat of formation + Delta-G solvation = 25.370834 kcal Electronic energy + Delta-G solvation = -25403.458130 eV Core-core repulsion = 21935.468942 eV Total energy + Delta-G solvation = -3467.989188 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.169 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.47091 -38.07835 -37.30292 -35.04648 -34.51570 -33.78110 -31.05199 -30.11768 -30.01009 -28.37870 -25.63720 -25.13062 -24.18146 -22.92487 -21.72788 -20.93511 -20.49797 -19.24673 -18.03041 -16.51576 -16.35776 -16.10901 -15.50503 -15.17643 -15.01964 -14.83501 -14.66833 -14.37680 -13.99906 -13.77302 -13.47673 -13.10815 -12.78368 -12.64575 -12.32706 -12.20861 -12.05204 -11.97828 -11.77933 -11.64041 -11.43462 -11.17238 -11.02512 -10.73827 -10.60227 -10.47313 -9.91175 -9.53202 -9.18803 -8.99627 -8.62815 -8.38386 -8.21197 -7.92818 -7.80914 -7.64296 -4.65476 2.04565 2.59974 3.05410 3.17995 3.22712 3.40471 3.51419 3.84952 3.85654 4.24872 4.61881 4.87242 4.91479 4.99716 5.11727 5.25644 5.26276 5.37038 5.41254 5.45492 5.53849 5.70132 5.74323 5.79829 5.83932 5.91868 6.07489 6.10663 6.16746 6.23208 6.33384 6.65987 6.73580 6.83242 6.92644 6.97035 7.08608 7.10464 7.27205 7.41008 7.44260 7.52307 7.60502 7.69695 7.87407 8.21713 8.38467 8.57383 8.64904 9.63711 Molecular weight = 303.17amu Principal moments of inertia in cm(-1) A = 0.022859 B = 0.003931 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.582227 B = 7120.814337 C = 7969.123956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.547 5.547 3 C 0.040 3.960 4 C 0.077 3.923 5 N -0.609 5.609 6 C 0.567 3.433 7 O -0.546 6.546 8 C -0.088 4.088 9 C -0.259 4.259 10 C -0.065 4.065 11 C -0.254 4.254 12 C 0.093 3.907 13 C -0.506 4.506 14 H 0.082 0.918 15 C 0.053 3.947 16 N -0.773 5.773 17 Si 1.074 2.926 18 H -0.273 1.273 19 H -0.262 1.262 20 H -0.290 1.290 21 C -0.165 4.165 22 C 0.155 3.845 23 H 0.070 0.930 24 C 0.067 3.933 25 N -0.859 5.859 26 C 0.059 3.941 27 H 0.023 0.977 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.038 0.962 32 H 0.138 0.862 33 H 0.067 0.933 34 H 0.107 0.893 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.294 0.706 38 H 0.103 0.897 39 H 0.062 0.938 40 H 0.079 0.921 41 H 0.334 0.666 42 H 0.343 0.657 43 H 0.093 0.907 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.463 -7.920 -2.520 16.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.272 5.272 3 C -0.089 4.089 4 C -0.045 4.045 5 N -0.343 5.343 6 C 0.359 3.641 7 O -0.425 6.425 8 C -0.091 4.091 9 C -0.278 4.278 10 C -0.083 4.083 11 C -0.273 4.273 12 C 0.090 3.910 13 C -0.532 4.532 14 H 0.100 0.900 15 C -0.173 4.173 16 N -0.392 5.392 17 Si 0.900 3.100 18 H -0.201 1.201 19 H -0.186 1.186 20 H -0.218 1.218 21 C -0.185 4.185 22 C 0.051 3.949 23 H 0.088 0.912 24 C -0.063 4.063 25 N -0.390 5.390 26 C -0.069 4.069 27 H 0.042 0.958 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.056 0.944 32 H 0.155 0.845 33 H 0.085 0.915 34 H 0.125 0.875 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.121 0.879 39 H 0.080 0.920 40 H 0.098 0.902 41 H 0.145 0.855 42 H 0.155 0.845 43 H 0.111 0.889 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -14.555 -6.528 -2.268 16.112 hybrid contribution 0.703 -1.739 0.167 1.883 sum -13.852 -8.267 -2.100 16.267 Atomic orbital electron populations 1.22332 0.87310 1.02126 1.00339 1.61975 1.07645 1.13739 1.43810 1.22435 0.95858 0.89438 1.01119 1.22665 0.92032 0.98657 0.91136 1.48065 1.34882 1.14423 1.36900 1.18959 0.77944 0.88257 0.78915 1.90689 1.57615 1.55070 1.39090 1.19327 0.94999 0.90535 1.04288 1.20386 0.97195 0.92639 1.17616 1.20442 0.95033 0.95079 0.97760 1.21008 0.93600 0.97657 1.15027 1.17539 0.92888 0.91034 0.89536 1.20721 0.93470 0.95585 1.43435 0.89987 1.27448 0.96216 1.01466 0.92161 1.70579 1.12497 1.38864 1.17228 0.83663 0.74701 0.73933 0.77689 1.20112 1.18645 1.21768 1.20887 0.92908 0.96193 1.08537 1.21217 0.92036 0.83367 0.98286 0.91183 1.22340 0.96459 0.90265 0.97211 1.58791 1.65397 1.07143 1.07643 1.22392 0.94586 0.98885 0.91055 0.95794 0.91428 0.91390 0.89661 0.94351 0.84488 0.91492 0.87537 0.88429 0.88458 0.89404 0.87898 0.91980 0.90219 0.85487 0.84497 0.88892 0.94637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.58 60.06 0.58 0.83 16 2 N -0.55 -6.56 4.88 -242.91 -1.19 -7.75 16 3 C 0.04 0.49 5.37 -3.93 -0.02 0.47 16 4 C 0.08 1.11 5.69 -3.84 -0.02 1.09 16 5 N -0.61 -10.07 3.02 -166.29 -0.50 -10.57 16 6 C 0.57 11.46 7.19 -12.31 -0.09 11.38 16 7 O -0.55 -11.99 12.52 5.32 0.07 -11.92 16 8 C -0.09 -1.93 5.43 -105.04 -0.57 -2.50 16 9 C -0.26 -5.13 7.42 -38.92 -0.29 -5.42 16 10 C -0.06 -1.33 10.01 -39.72 -0.40 -1.73 16 11 C -0.25 -5.96 8.02 -38.81 -0.31 -6.27 16 12 C 0.09 2.35 5.59 -106.87 -0.60 1.76 16 13 C -0.51 -13.23 9.30 -37.73 -0.35 -13.58 16 14 H 0.08 2.21 8.06 -52.49 -0.42 1.78 16 15 C 0.05 1.33 5.31 -17.34 -0.09 1.24 16 16 N -0.77 -19.49 13.65 55.55 0.76 -18.73 16 17 Si 1.07 22.98 25.08 -169.99 -4.26 18.72 16 18 H -0.27 -5.54 6.54 56.52 0.37 -5.18 16 19 H -0.26 -5.60 7.08 56.52 0.40 -5.20 16 20 H -0.29 -5.97 7.11 56.52 0.40 -5.57 16 21 C -0.17 -4.02 9.35 -38.44 -0.36 -4.38 16 22 C 0.16 2.24 3.39 -67.49 -0.23 2.01 16 23 H 0.07 1.00 8.14 -51.92 -0.42 0.57 16 24 C 0.07 1.00 4.71 -3.83 -0.02 0.98 16 25 N -0.86 -9.58 8.75 -10.37 -0.09 -9.67 16 26 C 0.06 0.76 4.57 -3.70 -0.02 0.75 16 27 H 0.02 0.23 8.14 -51.92 -0.42 -0.19 16 28 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.87 8.06 -51.93 -0.42 0.45 16 31 H 0.04 0.50 7.82 -51.93 -0.41 0.10 16 32 H 0.14 2.12 3.44 -51.93 -0.18 1.94 16 33 H 0.07 0.93 8.14 -51.92 -0.42 0.50 16 34 H 0.11 1.82 5.38 -52.49 -0.28 1.53 16 35 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 36 H 0.10 2.23 2.69 -52.49 -0.14 2.09 16 37 H 0.29 7.20 8.73 -40.82 -0.36 6.84 16 38 H 0.10 2.55 8.00 -52.49 -0.42 2.13 16 39 H 0.06 1.06 6.47 -51.93 -0.34 0.72 16 40 H 0.08 1.39 7.09 -51.93 -0.37 1.02 16 41 H 0.33 3.19 9.05 -39.29 -0.36 2.83 16 42 H 0.34 3.42 9.08 -39.29 -0.36 3.06 16 43 H 0.09 1.11 7.68 -51.93 -0.40 0.71 16 44 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 337.95 15.07 5.09 5.09 Total: -1.00 -27.28 337.95 -9.14 -36.41 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -6.23 Total: 11.80 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -2.79 Total: -13.38 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: -1.02 Total: -46.73 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.07 Total: -11.92 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -4.26 Total: 18.72 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.28 -9.14 -36.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580655310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.783 kcal (2) G-P(sol) polarization free energy of solvation -27.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds