Wall clock time and date at job start Tue Mar 31 2020 04:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.47372 * 2 1 4 4 C 1.53000 * 109.47349 * 120.00169 * 2 1 3 5 5 N 1.46498 * 109.47342 * 174.99770 * 4 2 1 6 6 C 1.46503 * 120.00183 * 270.00517 * 5 4 2 7 7 C 1.36938 * 119.99999 * 90.00079 * 5 4 2 8 8 H 1.08007 * 119.99569 * 23.66499 * 7 5 4 9 9 C 1.38804 * 120.00433 * 203.66680 * 7 5 4 10 10 N 1.31622 * 119.99900 * 11.23961 * 9 7 5 11 11 Si 1.86794 * 120.00441 * 191.23794 * 9 7 5 12 12 H 1.48501 * 109.47128 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47376 * 119.99793 * 11 9 7 14 14 H 1.48498 * 109.47436 * 240.00356 * 11 9 7 15 15 N 1.46498 * 109.47183 * 240.00561 * 2 1 3 16 16 C 1.34775 * 120.00272 * 84.99875 * 15 2 1 17 17 O 1.21588 * 119.99937 * 0.02562 * 16 15 2 18 18 C 1.47581 * 120.00001 * 179.97438 * 16 15 2 19 19 C 1.41517 * 120.56884 * 359.94514 * 18 16 15 20 20 N 1.30909 * 120.16788 * 179.97438 * 19 18 16 21 21 C 1.34250 * 121.27469 * 0.03814 * 20 19 18 22 22 N 1.32429 * 131.63931 * 179.97438 * 21 20 19 23 23 C 1.33702 * 109.32604 * 179.97438 * 22 21 20 24 24 C 1.34905 * 108.65632 * 0.02562 * 23 22 21 25 25 N 1.37004 * 107.05681 * 359.97438 * 24 23 22 26 26 C 1.35968 * 132.54616 * 180.02562 * 25 24 23 27 27 H 1.09001 * 109.47430 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47057 * 299.99747 * 1 2 3 29 29 H 1.09001 * 109.47291 * 59.99599 * 1 2 3 30 30 H 1.08996 * 109.47308 * 295.00220 * 4 2 1 31 31 H 1.09004 * 109.46484 * 55.00035 * 4 2 1 32 32 H 1.08998 * 109.46816 * 94.61256 * 6 5 4 33 33 H 1.08999 * 109.46679 * 214.61557 * 6 5 4 34 34 H 1.08998 * 109.46898 * 334.61553 * 6 5 4 35 35 H 0.96997 * 120.00055 * 179.97438 * 10 9 7 36 36 H 0.97000 * 119.99642 * 265.00093 * 15 2 1 37 37 H 1.07995 * 119.91461 * 0.03466 * 19 18 16 38 38 H 1.07994 * 125.66978 * 179.97438 * 23 22 21 39 39 H 1.08004 * 126.47211 * 179.97438 * 24 23 22 40 40 H 1.07996 * 120.58256 * 359.95460 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1905 6 6 4.1258 -1.9920 0.5610 7 6 4.2799 0.1647 1.7240 8 1 3.8836 0.8064 2.4971 9 6 5.5796 0.3448 1.2711 10 7 5.9915 -0.2792 0.1879 11 14 6.7441 1.4729 2.1988 12 1 6.0431 2.0498 3.3740 13 1 7.9237 0.6967 2.6587 14 1 7.1915 2.5685 1.3018 15 7 2.0183 -0.6905 -1.1962 16 6 2.1470 -0.0181 -2.3571 17 8 1.8583 1.1618 -2.4116 18 6 2.6395 -0.7136 -3.5620 19 6 2.9812 -2.0860 -3.5117 20 7 3.4168 -2.6952 -4.5854 21 6 3.5509 -2.0428 -5.7510 22 7 3.9645 -2.4461 -6.9426 23 6 3.9205 -1.4189 -7.7973 24 6 3.4691 -0.3303 -7.1408 25 7 3.2316 -0.7114 -5.8464 26 6 2.7744 -0.0362 -4.7584 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.7517 -0.1584 2.1369 31 1 1.6053 -1.7199 1.2950 32 1 4.3545 -1.7636 -0.4800 33 1 5.0464 -2.2397 1.0894 34 1 3.4420 -2.8396 0.6053 35 1 6.8996 -0.1531 -0.1288 36 1 2.2490 -1.6316 -1.1527 37 1 2.8814 -2.6323 -2.5855 38 1 4.2007 -1.4546 -8.8397 39 1 3.3226 0.6555 -7.5569 40 1 2.5223 1.0116 -4.8279 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754318636.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:19:33 Heat of formation + Delta-G solvation = 101.941516 kcal Electronic energy + Delta-G solvation = -24884.888295 eV Core-core repulsion = 21316.679118 eV Total energy + Delta-G solvation = -3568.209178 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.144 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.10865 -39.78401 -37.88568 -36.47284 -34.73367 -34.12435 -32.00901 -30.93589 -29.94047 -29.34254 -26.26463 -25.70392 -25.02526 -24.15184 -22.15244 -21.88101 -20.76060 -20.20520 -18.65039 -17.81324 -17.07542 -16.76555 -16.44166 -15.87635 -15.33504 -14.94416 -14.58205 -14.27015 -14.11109 -13.81764 -13.73511 -13.51186 -13.25293 -12.98526 -12.47009 -12.24665 -12.11462 -11.84865 -11.52207 -11.20238 -10.92011 -10.84621 -10.71024 -10.62248 -10.29146 -10.15423 -10.00581 -9.92183 -9.60745 -9.27133 -8.71962 -8.52807 -8.31680 -6.82342 -5.79173 -3.25946 0.26216 0.73120 2.13765 2.43567 3.13396 3.34704 3.40570 3.42866 3.43890 3.44237 3.69276 4.18781 4.29955 4.45559 4.59305 4.73176 5.06081 5.12371 5.24581 5.30551 5.41849 5.49411 5.59764 5.74419 5.89600 5.94410 6.01687 6.13712 6.28789 6.33919 6.38766 6.43267 6.55231 6.76417 6.95486 7.24516 7.36166 7.57727 7.75569 7.78450 7.83415 8.32784 8.47757 9.16509 9.78707 10.26182 11.25830 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.014939 B = 0.004495 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.797469 B = 6227.502146 C = 7084.275174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.117 3.883 3 H 0.089 0.911 4 C 0.142 3.858 5 N -0.597 5.597 6 C 0.158 3.842 7 C -0.257 4.257 8 H 0.069 0.931 9 C 0.007 3.993 10 N -0.904 5.904 11 Si 0.903 3.097 12 H -0.278 1.278 13 H -0.290 1.290 14 H -0.291 1.291 15 N -0.685 5.685 16 C 0.579 3.421 17 O -0.544 6.544 18 C -0.208 4.208 19 C 0.208 3.792 20 N -0.438 5.438 21 C 0.387 3.613 22 N -0.475 5.475 23 C 0.048 3.952 24 C -0.097 4.097 25 N -0.400 5.400 26 C 0.178 3.822 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.044 0.956 32 H 0.031 0.969 33 H 0.044 0.956 34 H -0.003 1.003 35 H 0.251 0.749 36 H 0.395 0.605 37 H 0.184 0.816 38 H 0.189 0.811 39 H 0.189 0.811 40 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.659 -1.406 -9.622 13.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.010 3.990 3 H 0.108 0.892 4 C 0.013 3.987 5 N -0.320 5.320 6 C 0.014 3.986 7 C -0.387 4.387 8 H 0.087 0.913 9 C -0.192 4.192 10 N -0.549 5.549 11 Si 0.733 3.267 12 H -0.203 1.203 13 H -0.217 1.217 14 H -0.218 1.218 15 N -0.334 5.334 16 C 0.363 3.637 17 O -0.423 6.423 18 C -0.217 4.217 19 C 0.020 3.980 20 N -0.149 5.149 21 C 0.039 3.961 22 N -0.197 5.197 23 C -0.103 4.103 24 C -0.227 4.227 25 N -0.077 5.077 26 C 0.043 3.957 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.015 0.985 35 H 0.061 0.939 36 H 0.231 0.769 37 H 0.201 0.799 38 H 0.206 0.794 39 H 0.206 0.794 40 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -9.118 -2.271 -10.149 13.831 hybrid contribution 0.592 1.976 0.511 2.125 sum -8.526 -0.295 -9.638 12.871 Atomic orbital electron populations 1.22161 0.96518 1.01326 1.01890 1.21995 0.91849 0.99317 0.85852 0.89244 1.21224 0.85829 0.97372 0.94249 1.43901 0.99026 1.20876 1.68150 1.20887 0.94808 0.85082 0.97860 1.19207 0.94607 1.10571 1.14305 0.91343 1.25011 0.98871 0.98976 0.96314 1.70028 1.17222 1.45552 1.22068 0.86218 0.81088 0.80231 0.79183 1.20294 1.21653 1.21814 1.45654 1.65054 1.13688 1.08956 1.17252 0.77885 0.86130 0.82431 1.90763 1.51553 1.15005 1.85026 1.20827 1.09485 0.96254 0.95157 1.23430 0.88190 0.90403 0.96016 1.67814 1.15962 1.35012 0.96086 1.22192 1.01437 0.78153 0.94343 1.70720 1.22488 1.29245 0.97255 1.22641 0.99950 0.87686 1.00037 1.22727 1.14811 1.03017 0.82172 1.44018 1.41509 1.12959 1.09238 1.22557 0.90333 0.99092 0.83731 0.92993 0.91827 0.92909 0.92011 0.93801 0.95115 0.93693 0.98483 0.93869 0.76924 0.79895 0.79369 0.79413 0.79385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.48 37.16 0.35 -1.76 16 2 C 0.12 1.96 2.88 -67.93 -0.20 1.76 16 3 H 0.09 1.84 7.58 -51.93 -0.39 1.44 16 4 C 0.14 2.49 5.33 -4.04 -0.02 2.47 16 5 N -0.60 -13.42 2.78 -181.12 -0.50 -13.92 16 6 C 0.16 3.43 7.60 59.85 0.46 3.89 16 7 C -0.26 -6.66 9.66 -15.06 -0.15 -6.80 16 8 H 0.07 1.75 7.85 -52.48 -0.41 1.34 16 9 C 0.01 0.19 5.13 -17.43 -0.09 0.10 16 10 N -0.90 -25.22 10.66 55.49 0.59 -24.63 16 11 Si 0.90 21.52 29.57 -169.99 -5.03 16.50 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 15 N -0.68 -11.02 4.37 -54.83 -0.24 -11.26 16 16 C 0.58 9.81 7.74 -12.45 -0.10 9.72 16 17 O -0.54 -10.69 16.04 5.29 0.08 -10.61 16 18 C -0.21 -3.08 5.89 -104.87 -0.62 -3.70 16 19 C 0.21 2.97 10.78 -16.70 -0.18 2.79 16 20 N -0.44 -7.16 10.45 -13.37 -0.14 -7.30 16 21 C 0.39 6.34 8.91 -322.25 -2.87 3.47 16 22 N -0.47 -7.60 11.31 -14.42 -0.16 -7.76 16 23 C 0.05 0.55 11.82 -17.92 -0.21 0.34 16 24 C -0.10 -1.05 11.76 -16.42 -0.19 -1.24 16 25 N -0.40 -5.52 2.94 -63.77 -0.19 -5.70 16 26 C 0.18 2.40 10.65 -15.75 -0.17 2.23 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.06 1.07 8.03 -51.93 -0.42 0.65 16 31 H 0.04 0.67 7.86 -51.93 -0.41 0.26 16 32 H 0.03 0.70 6.90 -51.93 -0.36 0.35 16 33 H 0.04 1.10 7.30 -51.93 -0.38 0.72 16 34 H 0.00 -0.06 7.84 -51.93 -0.41 -0.47 16 35 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 36 H 0.40 5.70 5.25 -40.82 -0.21 5.48 16 37 H 0.18 2.13 6.48 -52.49 -0.34 1.79 16 38 H 0.19 1.38 8.06 -52.49 -0.42 0.96 16 39 H 0.19 1.25 8.06 -52.48 -0.42 0.83 16 40 H 0.19 2.14 7.68 -52.49 -0.40 1.74 16 LS Contribution 338.70 15.07 5.10 5.10 Total: -1.00 -33.66 338.70 -9.44 -43.11 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -4.98 Total: 3.21 kcal Atomic # 6 Polarization: 17.25 SS G_CDS: -3.98 Total: 13.26 kcal Atomic # 7 Polarization: -69.93 SS G_CDS: -0.64 Total: -70.57 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.08 Total: -10.61 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.66 -9.44 -43.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754318636.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.047 kcal (2) G-P(sol) polarization free energy of solvation -33.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds