Wall clock time and date at job start Tue Mar 31 2020 03:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99673 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00422 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99911 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00518 * 3 2 1 7 7 C 1.38686 * 120.00275 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99919 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00004 * 359.97438 * 7 2 1 10 10 C 1.76199 * 99.99985 * 180.02562 * 9 7 2 11 11 N 1.31236 * 126.37879 * 0.02562 * 10 9 7 12 12 N 1.28656 * 109.28202 * 180.02562 * 11 10 9 13 13 C 1.30262 * 109.53950 * 359.97438 * 12 11 10 14 14 C 1.50705 * 126.19885 * 180.02562 * 13 12 11 15 15 C 1.52994 * 109.47010 * 89.97702 * 14 13 12 16 16 H 1.09003 * 109.64394 * 305.42435 * 15 14 13 17 17 C 1.53877 * 109.64433 * 185.00268 * 15 14 13 18 18 C 1.55050 * 106.62342 * 192.96527 * 17 15 14 19 19 S 1.83288 * 102.56689 * 42.43247 * 18 17 15 20 20 O 1.42098 * 109.35273 * 90.18552 * 19 18 17 21 21 O 1.42097 * 109.35404 * 223.25550 * 19 18 17 22 22 C 1.54156 * 109.65113 * 65.72468 * 15 14 13 23 23 O 1.34628 * 107.60430 * 359.74115 * 13 12 11 24 24 H 0.97000 * 119.99954 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47009 * 209.97739 * 14 13 12 26 26 H 1.08997 * 109.46928 * 329.97490 * 14 13 12 27 27 H 1.08996 * 110.02693 * 312.25554 * 17 15 14 28 28 H 1.09000 * 110.02849 * 73.67676 * 17 15 14 29 29 H 1.09000 * 110.78988 * 160.69844 * 18 17 15 30 30 H 1.08996 * 110.78933 * 284.16322 * 18 17 15 31 31 H 1.09000 * 110.32462 * 266.66741 * 22 15 14 32 32 H 1.09004 * 110.31673 * 28.85737 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 1.4001 5 1 3.5477 1.4404 -0.7000 6 1 1.4475 2.6527 -0.6999 7 6 2.0097 -1.2010 -0.0005 8 1 3.0897 -1.2010 -0.0001 9 16 1.1288 -2.7270 -0.0005 10 6 2.4786 -3.8595 -0.0005 11 7 3.7540 -3.5504 -0.0001 12 7 4.4530 -4.6305 -0.0008 13 6 3.6590 -5.6632 -0.0012 14 6 4.0806 -7.1101 -0.0015 15 6 4.2236 -7.5999 1.4409 16 1 4.9041 -6.9446 1.9846 17 6 4.7740 -9.0368 1.4470 18 6 4.5804 -9.5798 2.8864 19 16 2.8982 -8.9896 3.3123 20 8 1.9440 -9.9703 2.9289 21 8 2.8988 -8.4838 4.6402 22 6 2.8441 -7.5959 2.1289 23 8 2.3935 -5.2039 0.0051 24 1 -0.4850 -0.8401 -0.0004 25 1 3.3277 -7.7078 -0.5152 26 1 5.0366 -7.2098 -0.5156 27 1 4.2196 -9.6519 0.7383 28 1 5.8331 -9.0321 1.1893 29 1 4.6227 -10.6689 2.8980 30 1 5.3221 -9.1555 3.5630 31 1 2.6877 -6.6559 2.6580 32 1 2.0544 -7.7535 1.3943 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008250498.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:32 Heat of formation + Delta-G solvation = -47.931327 kcal Electronic energy + Delta-G solvation = -19996.941380 eV Core-core repulsion = 16598.752448 eV Total energy + Delta-G solvation = -3398.188932 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 304.038 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.36435 -37.89355 -37.27359 -36.25364 -35.46406 -33.04163 -32.54421 -30.07294 -28.01190 -25.43851 -24.79743 -23.31538 -22.07997 -20.94443 -19.12637 -18.88730 -17.47094 -17.25980 -17.09413 -16.47720 -15.95166 -15.78280 -14.96152 -14.78674 -14.48002 -14.07031 -13.86330 -13.18565 -12.97161 -12.72595 -12.52794 -12.49120 -12.40142 -12.26606 -11.93449 -11.79729 -11.39950 -11.26199 -11.14723 -11.01340 -10.74423 -10.59653 -10.32645 -10.23748 -10.02724 -9.14103 -8.91214 -7.27358 -7.05452 -4.54035 -0.26388 1.61606 1.73586 2.22154 2.93984 3.20648 3.23598 3.27888 3.30615 3.46507 3.67050 3.85903 3.92433 4.10416 4.18608 4.44528 4.46925 4.63254 4.71882 4.83633 4.84775 5.04025 5.07524 5.23596 5.28684 5.37179 5.54584 5.59923 5.78999 5.92209 6.13520 7.80599 8.11189 8.74084 8.91205 10.35345 Molecular weight = 304.04amu Principal moments of inertia in cm(-1) A = 0.027245 B = 0.003309 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.468970 B = 8459.614889 C = 8849.361285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.047 3.953 3 Si 1.095 2.905 4 H -0.278 1.278 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.621 4.621 8 H 0.103 0.897 9 S 0.155 5.845 10 C 0.149 3.851 11 N -0.308 5.308 12 N -0.273 5.273 13 C 0.106 3.894 14 C 0.000 4.000 15 C -0.082 4.082 16 H 0.103 0.897 17 C -0.114 4.114 18 C -0.588 4.588 19 S 2.389 3.611 20 O -0.937 6.937 21 O -0.938 6.938 22 C -0.593 4.593 23 O -0.223 6.223 24 H 0.272 0.728 25 H 0.097 0.903 26 H 0.113 0.887 27 H 0.092 0.908 28 H 0.104 0.896 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.140 0.860 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.092 -18.588 2.048 20.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.164 4.164 3 Si 0.918 3.082 4 H -0.204 1.204 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.769 4.769 8 H 0.122 0.878 9 S 0.389 5.611 10 C -0.164 4.164 11 N -0.161 5.161 12 N -0.121 5.121 13 C -0.111 4.111 14 C -0.040 4.040 15 C -0.102 4.102 16 H 0.122 0.878 17 C -0.153 4.153 18 C -0.718 4.718 19 S 2.573 3.427 20 O -0.934 6.934 21 O -0.936 6.936 22 C -0.722 4.722 23 O -0.107 6.107 24 H 0.084 0.916 25 H 0.116 0.884 26 H 0.131 0.869 27 H 0.111 0.889 28 H 0.122 0.878 29 H 0.157 0.843 30 H 0.157 0.843 31 H 0.158 0.842 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.037 -16.694 2.720 18.320 hybrid contribution 1.042 -1.746 -0.551 2.107 sum 8.080 -18.440 2.169 20.249 Atomic orbital electron populations 1.70930 1.06748 1.30288 1.42611 1.26344 0.95972 1.02630 0.91483 0.83177 0.74695 0.72622 0.77687 1.20438 1.20450 1.20174 1.24246 0.99118 0.89702 1.63858 0.87846 1.83308 0.97916 0.95508 1.84389 1.30865 1.01870 0.82754 1.00910 1.74970 0.99624 1.18740 1.22807 1.74042 1.28667 0.94692 1.14719 1.27298 0.78212 0.98978 1.06607 1.19933 1.03628 0.84029 0.96391 1.21659 0.94042 0.97653 0.96869 0.87843 1.22263 1.05186 0.94018 0.93823 1.30622 1.23394 1.11626 1.06137 1.09096 0.78743 0.78084 0.76812 1.93621 1.57741 1.57744 1.84327 1.93624 1.86571 1.79962 1.33394 1.30695 1.05134 1.19730 1.16671 1.84882 1.32023 1.21534 1.72268 0.91591 0.88423 0.86912 0.88893 0.87789 0.84320 0.84312 0.84195 0.83896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 62. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.31 13.66 55.48 0.76 -23.55 16 2 C 0.05 1.25 5.49 -17.48 -0.10 1.15 16 3 Si 1.09 23.64 29.92 -169.99 -5.09 18.56 16 4 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.62 -16.88 9.37 30.90 0.29 -16.59 16 8 H 0.10 2.90 6.92 -52.48 -0.36 2.54 16 9 S 0.15 3.74 20.92 -107.50 -2.25 1.50 16 10 C 0.15 3.42 8.52 52.51 0.45 3.87 16 11 N -0.31 -7.37 11.06 30.32 0.34 -7.04 16 12 N -0.27 -5.54 12.21 32.60 0.40 -5.14 16 13 C 0.11 1.75 7.21 -12.94 -0.09 1.66 16 14 C 0.00 0.00 5.22 -27.88 -0.15 -0.15 16 15 C -0.08 -0.62 2.59 -89.56 -0.23 -0.85 16 16 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 17 C -0.11 -0.50 5.80 -25.19 -0.15 -0.65 16 18 C -0.59 -2.77 7.31 38.24 0.28 -2.49 16 19 S 2.39 20.59 6.10 -107.50 -0.66 19.94 16 20 O -0.94 -11.10 18.15 -57.73 -1.05 -12.15 16 21 O -0.94 -12.06 18.15 -57.73 -1.05 -13.10 16 22 C -0.59 -5.24 6.23 37.76 0.24 -5.00 16 23 O -0.22 -4.30 10.90 3.70 0.04 -4.26 16 24 H 0.27 7.46 7.12 -40.82 -0.29 7.17 16 25 H 0.10 0.70 8.03 -51.93 -0.42 0.29 16 26 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.09 0.28 8.11 -51.93 -0.42 -0.14 16 28 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.14 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.14 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.14 1.44 8.14 -51.93 -0.42 1.01 16 32 H 0.14 1.18 7.81 -51.93 -0.41 0.78 16 LS Contribution 306.96 15.07 4.63 4.63 Total: -1.00 -36.87 306.96 -6.62 -43.49 By element: Atomic # 1 Polarization: -0.58 SS G_CDS: -3.23 Total: -3.81 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: 0.54 Total: -19.05 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 1.49 Total: -35.73 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -2.05 Total: -29.51 kcal Atomic # 14 Polarization: 23.64 SS G_CDS: -5.09 Total: 18.56 kcal Atomic # 16 Polarization: 24.34 SS G_CDS: -2.90 Total: 21.43 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -36.87 -6.62 -43.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008250498.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.442 kcal (2) G-P(sol) polarization free energy of solvation -36.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds