Wall clock time and date at job start Tue Mar 31 2020 03:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99673 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00422 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99911 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00518 * 3 2 1 7 7 C 1.38686 * 120.00275 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99919 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00004 * 359.97438 * 7 2 1 10 10 C 1.76199 * 99.99985 * 180.02562 * 9 7 2 11 11 N 1.31236 * 126.37879 * 0.02562 * 10 9 7 12 12 N 1.28656 * 109.28202 * 180.02562 * 11 10 9 13 13 C 1.30262 * 109.53950 * 359.97438 * 12 11 10 14 14 C 1.50705 * 126.19885 * 180.02562 * 13 12 11 15 15 C 1.52994 * 109.47010 * 89.97702 * 14 13 12 16 16 H 1.09003 * 109.64394 * 305.42435 * 15 14 13 17 17 C 1.53877 * 109.64433 * 185.00268 * 15 14 13 18 18 C 1.55050 * 106.62342 * 192.96527 * 17 15 14 19 19 S 1.83288 * 102.56689 * 42.43247 * 18 17 15 20 20 O 1.42098 * 109.35273 * 90.18552 * 19 18 17 21 21 O 1.42097 * 109.35404 * 223.25550 * 19 18 17 22 22 C 1.54156 * 109.65113 * 65.72468 * 15 14 13 23 23 O 1.34628 * 107.60430 * 359.74115 * 13 12 11 24 24 H 0.97000 * 119.99954 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47009 * 209.97739 * 14 13 12 26 26 H 1.08997 * 109.46928 * 329.97490 * 14 13 12 27 27 H 1.08996 * 110.02693 * 312.25554 * 17 15 14 28 28 H 1.09000 * 110.02849 * 73.67676 * 17 15 14 29 29 H 1.09000 * 110.78988 * 160.69844 * 18 17 15 30 30 H 1.08996 * 110.78933 * 284.16322 * 18 17 15 31 31 H 1.09000 * 110.32462 * 266.66741 * 22 15 14 32 32 H 1.09004 * 110.31673 * 28.85737 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 1.4001 5 1 3.5477 1.4404 -0.7000 6 1 1.4475 2.6527 -0.6999 7 6 2.0097 -1.2010 -0.0005 8 1 3.0897 -1.2010 -0.0001 9 16 1.1288 -2.7270 -0.0005 10 6 2.4786 -3.8595 -0.0005 11 7 3.7540 -3.5504 -0.0001 12 7 4.4530 -4.6305 -0.0008 13 6 3.6590 -5.6632 -0.0012 14 6 4.0806 -7.1101 -0.0015 15 6 4.2236 -7.5999 1.4409 16 1 4.9041 -6.9446 1.9846 17 6 4.7740 -9.0368 1.4470 18 6 4.5804 -9.5798 2.8864 19 16 2.8982 -8.9896 3.3123 20 8 1.9440 -9.9703 2.9289 21 8 2.8988 -8.4838 4.6402 22 6 2.8441 -7.5959 2.1289 23 8 2.3935 -5.2039 0.0051 24 1 -0.4850 -0.8401 -0.0004 25 1 3.3277 -7.7078 -0.5152 26 1 5.0366 -7.2098 -0.5156 27 1 4.2196 -9.6519 0.7383 28 1 5.8331 -9.0321 1.1893 29 1 4.6227 -10.6689 2.8980 30 1 5.3221 -9.1555 3.5630 31 1 2.6877 -6.6559 2.6580 32 1 2.0544 -7.7535 1.3943 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008250498.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:32 Heat of formation + Delta-G solvation = -80.555960 kcal Electronic energy + Delta-G solvation = -19998.356090 eV Core-core repulsion = 16598.752448 eV Total energy + Delta-G solvation = -3399.603642 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 304.038 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.99911 -38.53687 -38.08245 -37.12022 -37.06568 -35.08049 -33.55082 -31.06140 -29.02849 -27.34126 -25.67505 -24.99788 -23.26902 -21.65863 -20.83289 -19.84975 -19.16578 -18.43227 -17.99041 -17.49417 -17.18612 -16.65123 -16.17620 -15.92940 -15.54199 -15.02488 -14.92599 -14.77402 -14.54999 -13.70393 -13.46296 -13.26813 -13.16653 -13.15889 -12.99501 -12.94960 -12.90719 -12.61788 -12.47060 -12.05120 -11.97842 -11.92219 -11.72003 -11.57772 -11.19543 -10.94717 -10.87717 -9.17270 -9.16408 -6.62327 -0.92187 -0.02303 0.05364 1.31510 1.46117 1.57106 1.60563 1.77996 1.80506 2.10199 2.64684 2.75790 2.81857 2.99776 3.20607 3.37538 3.55275 3.72066 3.85829 4.00509 4.04332 4.09014 4.25196 4.39472 4.58515 4.67517 4.76827 4.84715 4.89601 5.11230 5.16031 5.66065 5.98111 6.70184 7.26625 8.26433 Molecular weight = 304.04amu Principal moments of inertia in cm(-1) A = 0.027245 B = 0.003309 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.468970 B = 8459.614889 C = 8849.361285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.008 3.992 3 Si 1.135 2.865 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.267 1.267 7 C -0.640 4.640 8 H 0.087 0.913 9 S 0.137 5.863 10 C 0.135 3.865 11 N -0.335 5.335 12 N -0.309 5.309 13 C 0.147 3.853 14 C -0.008 4.008 15 C -0.081 4.081 16 H 0.100 0.900 17 C -0.109 4.109 18 C -0.551 4.551 19 S 2.386 3.614 20 O -0.975 6.975 21 O -0.993 6.993 22 C -0.601 4.601 23 O -0.221 6.221 24 H 0.264 0.736 25 H 0.130 0.870 26 H 0.148 0.852 27 H 0.117 0.883 28 H 0.137 0.863 29 H 0.168 0.832 30 H 0.157 0.843 31 H 0.116 0.884 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.582 -20.946 1.283 23.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.197 4.197 3 Si 0.952 3.048 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.191 1.191 7 C -0.787 4.787 8 H 0.106 0.894 9 S 0.369 5.631 10 C -0.182 4.182 11 N -0.187 5.187 12 N -0.155 5.155 13 C -0.070 4.070 14 C -0.046 4.046 15 C -0.101 4.101 16 H 0.118 0.882 17 C -0.147 4.147 18 C -0.685 4.685 19 S 2.575 3.425 20 O -0.972 6.972 21 O -0.990 6.990 22 C -0.730 4.730 23 O -0.104 6.104 24 H 0.076 0.924 25 H 0.148 0.852 26 H 0.166 0.834 27 H 0.135 0.865 28 H 0.155 0.845 29 H 0.186 0.814 30 H 0.175 0.825 31 H 0.134 0.866 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 9.514 -19.085 1.976 21.417 hybrid contribution 0.432 -1.308 -0.333 1.417 sum 9.946 -20.394 1.643 22.749 Atomic orbital electron populations 1.71003 1.07447 1.29968 1.44324 1.27721 0.96069 1.05633 0.90322 0.82714 0.73964 0.69433 0.78646 1.18904 1.19666 1.19137 1.24375 0.98648 0.91418 1.64304 0.89437 1.83064 0.98516 0.94979 1.86494 1.30515 1.01274 0.83861 1.02519 1.74902 1.00240 1.20987 1.22581 1.74001 1.28851 0.94764 1.17881 1.28936 0.76571 1.01142 1.00336 1.20626 1.06216 0.79384 0.98423 1.21743 0.93004 1.00286 0.95115 0.88204 1.22392 1.07284 0.91298 0.93718 1.30434 1.18010 1.13337 1.06739 1.08983 0.80712 0.77278 0.75524 1.93564 1.60941 1.58314 1.84424 1.93550 1.88091 1.80851 1.36481 1.30701 1.06645 1.18754 1.16950 1.84918 1.33635 1.20050 1.71841 0.92404 0.85222 0.83400 0.86465 0.84514 0.81417 0.82517 0.86578 0.83519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.80 13.66 21.63 0.30 -50.50 16 2 C 0.01 0.45 5.49 84.83 0.47 0.92 16 3 Si 1.14 47.71 29.92 68.60 2.05 49.76 16 4 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 5 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 6 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 7 C -0.64 -35.81 9.37 67.93 0.64 -35.17 16 8 H 0.09 5.08 6.92 -2.91 -0.02 5.06 16 9 S 0.14 6.86 20.92 -56.49 -1.18 5.68 16 10 C 0.13 6.27 8.52 130.33 1.11 7.38 16 11 N -0.33 -16.20 11.06 -171.90 -1.90 -18.11 16 12 N -0.31 -12.26 12.21 -165.20 -2.02 -14.28 16 13 C 0.15 4.54 7.21 88.34 0.64 5.18 16 14 C -0.01 -0.11 5.22 29.85 0.16 0.05 16 15 C -0.08 -0.92 2.59 -10.11 -0.03 -0.95 16 16 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 17 C -0.11 -0.29 5.80 31.59 0.18 -0.11 16 18 C -0.55 -2.55 7.31 72.68 0.53 -2.02 16 19 S 2.39 38.68 6.10 -56.49 -0.34 38.34 16 20 O -0.98 -22.45 18.15 -127.47 -2.31 -24.76 16 21 O -0.99 -26.14 18.15 -127.47 -2.31 -28.46 16 22 C -0.60 -9.91 6.23 72.37 0.45 -9.46 16 23 O -0.22 -8.40 10.90 -9.67 -0.11 -8.51 16 24 H 0.26 15.00 7.12 -92.71 -0.66 14.34 16 25 H 0.13 1.16 8.03 -2.39 -0.02 1.14 16 26 H 0.15 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.12 -0.11 8.11 -2.39 -0.02 -0.13 16 28 H 0.14 -0.27 8.14 -2.39 -0.02 -0.29 16 29 H 0.17 0.05 8.14 -2.39 -0.02 0.03 16 30 H 0.16 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.15 2.25 7.81 -2.38 -0.02 2.23 16 Total: -1.00 -84.90 306.96 -2.42 -87.32 By element: Atomic # 1 Polarization: -3.57 SS G_CDS: 1.27 Total: -2.30 kcal Atomic # 6 Polarization: -38.32 SS G_CDS: 4.14 Total: -34.17 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -3.62 Total: -82.89 kcal Atomic # 8 Polarization: -57.00 SS G_CDS: -4.73 Total: -61.73 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 2.05 Total: 49.76 kcal Atomic # 16 Polarization: 45.54 SS G_CDS: -1.53 Total: 44.01 kcal Total: -84.90 -2.42 -87.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008250498.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.761 kcal (2) G-P(sol) polarization free energy of solvation -84.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds