Wall clock time and date at job start Tue Mar 31 2020 03:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46497 * 120.00107 * 2 1 4 4 S 1.65607 * 119.99673 * 180.02562 * 2 1 3 5 5 O 1.42098 * 106.40012 * 341.34707 * 4 2 1 6 6 O 1.42093 * 106.39831 * 208.42465 * 4 2 1 7 7 C 1.76196 * 107.21807 * 94.88634 * 4 2 1 8 8 C 1.37447 * 123.35934 * 346.07514 * 7 4 2 9 9 C 1.33856 * 115.10795 * 180.02562 * 8 7 4 10 10 S 1.70613 * 110.96746 * 0.02562 * 9 8 7 11 11 C 1.36763 * 123.36187 * 166.11311 * 7 4 2 12 12 C 1.46462 * 125.46293 * 359.96838 * 11 7 4 13 13 O 1.21737 * 119.99679 * 5.90940 * 12 11 7 14 14 N 1.34773 * 119.99927 * 185.90944 * 12 11 7 15 15 C 1.36880 * 119.99894 * 179.97438 * 14 12 11 16 16 H 1.08001 * 120.00232 * 0.02562 * 15 14 12 17 17 C 1.39013 * 120.00175 * 179.97438 * 15 14 12 18 18 N 1.31397 * 119.99654 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 119.99862 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47138 * 89.99651 * 19 17 15 21 21 H 1.48499 * 109.47186 * 209.99525 * 19 17 15 22 22 H 1.48499 * 109.47115 * 329.99927 * 19 17 15 23 23 H 1.09008 * 109.46863 * 272.88404 * 1 2 3 24 24 H 1.08997 * 109.46841 * 32.87783 * 1 2 3 25 25 H 1.08994 * 109.47299 * 152.88196 * 1 2 3 26 26 H 1.09005 * 109.46653 * 270.00243 * 3 2 1 27 27 H 1.08991 * 109.47191 * 30.00016 * 3 2 1 28 28 H 1.08997 * 109.47219 * 150.00549 * 3 2 1 29 29 H 1.07999 * 122.44970 * 0.06320 * 8 7 4 30 30 H 1.08000 * 124.51426 * 180.02562 * 9 8 7 31 31 H 0.97001 * 120.00198 * 359.97438 * 14 12 11 32 32 H 0.97006 * 119.99317 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2930 -1.4342 -0.0006 5 8 1.3750 -2.4276 0.4349 6 8 3.5318 -1.1826 0.6483 7 6 2.6779 -1.8135 -1.6777 8 6 2.0968 -1.1779 -2.7489 9 6 2.5107 -1.5970 -3.9509 10 16 3.6735 -2.8361 -3.7983 11 6 3.5841 -2.7703 -2.0435 12 6 4.3560 -3.6063 -1.1214 13 8 4.1383 -3.5538 0.0752 14 7 5.3073 -4.4338 -1.5977 15 6 6.0291 -5.2147 -0.7359 16 1 5.8360 -5.1682 0.3257 17 6 7.0099 -6.0686 -1.2271 18 7 7.7031 -6.8179 -0.3997 19 14 7.3434 -6.1497 -3.0632 20 1 8.3830 -5.1518 -3.4221 21 1 7.8191 -7.5104 -3.4203 22 1 6.0932 -5.8512 -3.8070 23 1 -0.3633 0.0517 1.0264 24 1 -0.3633 0.8631 -0.5579 25 1 -0.3633 -0.9146 -0.4684 26 1 2.3791 1.5833 -1.0277 27 1 1.6085 2.0283 0.5138 28 1 3.1500 1.1383 0.5137 29 1 1.3606 -0.3968 -2.6296 30 1 2.1558 -1.2032 -4.8918 31 1 5.4805 -4.4759 -2.5512 32 1 8.3878 -7.4134 -0.7425 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264660176.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:53 Heat of formation + Delta-G solvation = -56.834151 kcal Electronic energy + Delta-G solvation = -21050.711476 eV Core-core repulsion = 17652.136489 eV Total energy + Delta-G solvation = -3398.574987 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 304.038 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.87929 -37.19963 -36.57479 -36.06397 -35.16315 -34.31745 -32.14033 -29.76852 -28.11132 -26.18620 -24.75925 -24.05307 -20.82159 -20.16824 -19.28497 -18.33915 -17.54868 -16.74579 -16.38524 -15.84975 -15.39071 -14.95083 -14.49224 -14.41639 -14.03406 -13.90060 -13.64190 -13.02676 -12.96556 -12.70800 -12.61005 -12.55111 -12.26446 -12.21460 -11.45987 -11.42149 -11.26680 -11.23146 -11.14518 -10.85120 -10.46120 -10.31883 -9.93628 -9.09167 -8.94965 -8.91401 -8.61821 -8.51950 -6.74590 -4.07541 0.49922 0.74721 1.68337 2.03964 2.26829 2.83929 2.88312 2.94763 3.31800 3.78134 3.79999 4.20354 4.27097 4.77881 4.92910 4.95692 5.10369 5.26958 5.30655 5.39901 5.50314 5.54116 5.68932 5.73770 5.79376 5.98578 6.08860 6.33375 6.60324 7.11645 7.75443 8.17073 8.53395 8.97260 9.43975 10.34364 Molecular weight = 304.04amu Principal moments of inertia in cm(-1) A = 0.022523 B = 0.005517 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.866247 B = 5074.004855 C = 5933.023963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -1.016 6.016 3 C 0.084 3.916 4 S 2.721 3.279 5 O -0.948 6.948 6 O -0.926 6.926 7 C -0.669 4.669 8 C -0.069 4.069 9 C -0.273 4.273 10 S 0.192 5.808 11 C -0.085 4.085 12 C 0.464 3.536 13 O -0.552 6.552 14 N -0.545 5.545 15 C -0.278 4.278 16 H 0.136 0.864 17 C 0.045 3.955 18 N -0.837 5.837 19 Si 0.875 3.125 20 H -0.260 1.260 21 H -0.265 1.265 22 H -0.263 1.263 23 H 0.058 0.942 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.144 0.856 30 H 0.167 0.833 31 H 0.372 0.628 32 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.693 13.628 -9.058 19.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.856 5.856 3 C -0.062 4.062 4 S 2.806 3.194 5 O -0.938 6.938 6 O -0.915 6.915 7 C -0.768 4.768 8 C -0.098 4.098 9 C -0.411 4.411 10 S 0.457 5.543 11 C -0.210 4.210 12 C 0.252 3.748 13 O -0.437 6.437 14 N -0.180 5.180 15 C -0.409 4.409 16 H 0.153 0.847 17 C -0.164 4.164 18 N -0.473 5.473 19 Si 0.699 3.301 20 H -0.185 1.185 21 H -0.190 1.190 22 H -0.188 1.188 23 H 0.077 0.923 24 H 0.087 0.913 25 H 0.094 0.906 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.103 0.897 29 H 0.161 0.839 30 H 0.185 0.815 31 H 0.206 0.794 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.625 12.155 -8.592 17.726 hybrid contribution -0.549 0.889 -1.470 1.803 sum -10.174 13.045 -10.062 19.362 Atomic orbital electron populations 1.21496 0.78641 1.03009 1.02355 1.57718 1.15155 1.22474 1.90275 1.21575 0.97598 0.85171 1.01848 1.01581 0.73246 0.71552 0.72989 1.93535 1.64751 1.56401 1.79108 1.93572 1.42840 1.83906 1.71232 1.30401 1.11038 1.09462 1.25899 1.19384 1.00269 1.00206 0.89969 1.25006 1.07234 1.06272 1.02543 1.82979 1.37408 1.33181 1.00717 1.24960 0.99522 0.99291 0.97264 1.16409 0.85203 0.85571 0.87566 1.90798 1.69672 1.69551 1.13725 1.42233 1.31589 1.35439 1.08729 1.19824 1.12171 1.14877 0.93985 0.84686 1.25231 0.95910 0.95850 0.99389 1.69611 1.20293 1.21988 1.35421 0.86687 0.79830 0.79954 0.83611 1.18490 1.18966 1.18768 0.92342 0.91314 0.90591 0.92900 0.90815 0.89704 0.83872 0.81546 0.79374 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.92 10.35 59.85 0.62 1.54 16 2 N -1.02 -13.56 3.05 -129.21 -0.39 -13.95 16 3 C 0.08 0.87 10.69 59.85 0.64 1.51 16 4 S 2.72 53.65 4.33 -107.50 -0.47 53.19 16 5 O -0.95 -21.33 16.86 -57.20 -0.96 -22.29 16 6 O -0.93 -21.62 14.91 -66.13 -0.99 -22.61 16 7 C -0.67 -12.59 5.87 -40.40 -0.24 -12.83 16 8 C -0.07 -0.98 9.74 -41.41 -0.40 -1.38 16 9 C -0.27 -3.58 10.92 29.19 0.32 -3.26 16 10 S 0.19 3.00 22.17 -107.50 -2.38 0.62 16 11 C -0.09 -1.79 6.45 -36.80 -0.24 -2.02 16 12 C 0.46 11.87 7.69 -12.95 -0.10 11.77 16 13 O -0.55 -16.21 13.21 -16.60 -0.22 -16.43 16 14 N -0.54 -13.53 5.08 -12.23 -0.06 -13.59 16 15 C -0.28 -7.70 10.16 -15.01 -0.15 -7.86 16 16 H 0.14 4.23 7.38 -52.49 -0.39 3.84 16 17 C 0.05 1.17 5.50 -17.45 -0.10 1.07 16 18 N -0.84 -22.74 13.96 55.50 0.77 -21.97 16 19 Si 0.88 18.09 27.74 -169.99 -4.71 13.37 16 20 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 21 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 22 H -0.26 -4.98 6.52 56.52 0.37 -4.61 16 23 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 24 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 25 H 0.08 0.79 7.55 -51.93 -0.39 0.40 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.56 8.07 -51.93 -0.42 0.14 16 28 H 0.08 1.01 7.07 -51.93 -0.37 0.65 16 29 H 0.14 1.52 7.80 -52.49 -0.41 1.12 16 30 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 31 H 0.37 8.05 4.89 -40.82 -0.20 7.85 16 32 H 0.28 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 302.91 15.07 4.56 4.56 Total: -1.00 -35.40 302.91 -7.53 -42.93 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -3.03 Total: 7.61 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: 0.35 Total: -11.46 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: 0.32 Total: -49.51 kcal Atomic # 8 Polarization: -59.16 SS G_CDS: -2.17 Total: -61.33 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -4.71 Total: 13.37 kcal Atomic # 16 Polarization: 56.66 SS G_CDS: -2.85 Total: 53.81 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -35.40 -7.53 -42.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264660176.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.905 kcal (2) G-P(sol) polarization free energy of solvation -35.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds