Wall clock time and date at job start Tue Mar 31 2020 03:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46497 * 120.00107 * 2 1 4 4 S 1.65607 * 119.99673 * 180.02562 * 2 1 3 5 5 O 1.42098 * 106.40012 * 341.34707 * 4 2 1 6 6 O 1.42093 * 106.39831 * 208.42465 * 4 2 1 7 7 C 1.76196 * 107.21807 * 94.88634 * 4 2 1 8 8 C 1.37447 * 123.35934 * 346.07514 * 7 4 2 9 9 C 1.33856 * 115.10795 * 180.02562 * 8 7 4 10 10 S 1.70613 * 110.96746 * 0.02562 * 9 8 7 11 11 C 1.36763 * 123.36187 * 166.11311 * 7 4 2 12 12 C 1.46462 * 125.46293 * 359.96838 * 11 7 4 13 13 O 1.21737 * 119.99679 * 5.90940 * 12 11 7 14 14 N 1.34773 * 119.99927 * 185.90944 * 12 11 7 15 15 C 1.36880 * 119.99894 * 179.97438 * 14 12 11 16 16 H 1.08001 * 120.00232 * 0.02562 * 15 14 12 17 17 C 1.39013 * 120.00175 * 179.97438 * 15 14 12 18 18 N 1.31397 * 119.99654 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 119.99862 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47138 * 89.99651 * 19 17 15 21 21 H 1.48499 * 109.47186 * 209.99525 * 19 17 15 22 22 H 1.48499 * 109.47115 * 329.99927 * 19 17 15 23 23 H 1.09008 * 109.46863 * 272.88404 * 1 2 3 24 24 H 1.08997 * 109.46841 * 32.87783 * 1 2 3 25 25 H 1.08994 * 109.47299 * 152.88196 * 1 2 3 26 26 H 1.09005 * 109.46653 * 270.00243 * 3 2 1 27 27 H 1.08991 * 109.47191 * 30.00016 * 3 2 1 28 28 H 1.08997 * 109.47219 * 150.00549 * 3 2 1 29 29 H 1.07999 * 122.44970 * 0.06320 * 8 7 4 30 30 H 1.08000 * 124.51426 * 180.02562 * 9 8 7 31 31 H 0.97001 * 120.00198 * 359.97438 * 14 12 11 32 32 H 0.97006 * 119.99317 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2930 -1.4342 -0.0006 5 8 1.3750 -2.4276 0.4349 6 8 3.5318 -1.1826 0.6483 7 6 2.6779 -1.8135 -1.6777 8 6 2.0968 -1.1779 -2.7489 9 6 2.5107 -1.5970 -3.9509 10 16 3.6735 -2.8361 -3.7983 11 6 3.5841 -2.7703 -2.0435 12 6 4.3560 -3.6063 -1.1214 13 8 4.1383 -3.5538 0.0752 14 7 5.3073 -4.4338 -1.5977 15 6 6.0291 -5.2147 -0.7359 16 1 5.8360 -5.1682 0.3257 17 6 7.0099 -6.0686 -1.2271 18 7 7.7031 -6.8179 -0.3997 19 14 7.3434 -6.1497 -3.0632 20 1 8.3830 -5.1518 -3.4221 21 1 7.8191 -7.5104 -3.4203 22 1 6.0932 -5.8512 -3.8070 23 1 -0.3633 0.0517 1.0264 24 1 -0.3633 0.8631 -0.5579 25 1 -0.3633 -0.9146 -0.4684 26 1 2.3791 1.5833 -1.0277 27 1 1.6085 2.0283 0.5138 28 1 3.1500 1.1383 0.5137 29 1 1.3606 -0.3968 -2.6296 30 1 2.1558 -1.2032 -4.8918 31 1 5.4805 -4.4759 -2.5512 32 1 8.3878 -7.4134 -0.7425 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264660176.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:52 Heat of formation + Delta-G solvation = -86.744267 kcal Electronic energy + Delta-G solvation = -21052.008476 eV Core-core repulsion = 17652.136489 eV Total energy + Delta-G solvation = -3399.871987 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 304.038 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.74557 -38.63909 -38.23271 -37.10970 -36.82990 -36.27784 -34.09309 -31.23493 -28.93319 -27.88206 -26.12752 -25.28329 -22.48297 -21.67848 -21.13879 -19.64913 -19.22618 -18.19818 -17.82383 -17.20772 -17.05637 -16.56127 -16.07331 -15.65641 -15.38964 -15.25819 -15.24638 -14.82445 -14.44271 -14.17872 -13.97763 -13.63285 -13.43122 -13.28719 -13.12840 -13.09908 -12.63329 -12.57770 -12.53795 -12.38829 -12.09697 -11.90972 -11.76508 -10.99729 -10.53434 -10.27882 -10.06817 -9.85278 -8.63675 -6.20841 -0.92726 -0.72908 0.30119 0.77123 1.03876 1.19493 1.28458 1.34710 1.92005 2.05407 2.07926 2.45878 2.79304 2.97809 3.55454 3.70069 3.87654 4.09772 4.17257 4.52185 4.55425 4.62116 4.79586 4.83028 4.97255 4.99337 5.06027 5.12113 5.27302 5.63060 5.68301 6.26216 6.54827 6.99886 7.52365 8.51865 Molecular weight = 304.04amu Principal moments of inertia in cm(-1) A = 0.022523 B = 0.005517 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.866247 B = 5074.004855 C = 5933.023963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -1.001 6.001 3 C 0.073 3.927 4 S 2.714 3.286 5 O -0.992 6.992 6 O -0.981 6.981 7 C -0.644 4.644 8 C -0.086 4.086 9 C -0.226 4.226 10 S 0.267 5.733 11 C -0.169 4.169 12 C 0.470 3.530 13 O -0.603 6.603 14 N -0.550 5.550 15 C -0.334 4.334 16 H 0.067 0.933 17 C 0.000 4.000 18 N -0.901 5.901 19 Si 0.948 3.052 20 H -0.244 1.244 21 H -0.254 1.254 22 H -0.232 1.232 23 H 0.061 0.939 24 H 0.118 0.882 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.111 0.889 28 H 0.058 0.942 29 H 0.191 0.809 30 H 0.227 0.773 31 H 0.389 0.611 32 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.534 17.308 -14.817 26.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.845 5.845 3 C -0.072 4.072 4 S 2.803 3.197 5 O -0.982 6.982 6 O -0.970 6.970 7 C -0.748 4.748 8 C -0.114 4.114 9 C -0.364 4.364 10 S 0.534 5.466 11 C -0.292 4.292 12 C 0.258 3.742 13 O -0.491 6.491 14 N -0.188 5.188 15 C -0.464 4.464 16 H 0.085 0.915 17 C -0.203 4.203 18 N -0.538 5.538 19 Si 0.765 3.235 20 H -0.167 1.167 21 H -0.178 1.178 22 H -0.155 1.155 23 H 0.080 0.920 24 H 0.137 0.863 25 H 0.089 0.911 26 H 0.102 0.898 27 H 0.129 0.871 28 H 0.077 0.923 29 H 0.208 0.792 30 H 0.243 0.757 31 H 0.225 0.775 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.459 15.824 -14.344 24.726 hybrid contribution -0.105 0.192 0.210 0.304 sum -12.564 16.017 -14.134 24.782 Atomic orbital electron populations 1.21890 0.76045 1.05019 1.03669 1.57246 1.16391 1.20889 1.89936 1.21920 0.96954 0.84162 1.04124 1.01201 0.72346 0.72547 0.73647 1.93469 1.65299 1.59109 1.80325 1.93506 1.45559 1.84923 1.73031 1.30582 1.09277 1.08141 1.26823 1.19794 1.01467 1.01483 0.88646 1.25869 1.03378 1.02685 1.04424 1.82764 1.36480 1.32597 0.94773 1.24601 1.02244 1.01548 1.00844 1.17285 0.84375 0.84688 0.87842 1.90752 1.70786 1.70662 1.16859 1.41829 1.31975 1.36015 1.08932 1.19192 1.16051 1.19256 0.91852 0.91512 1.26202 0.94303 0.94066 1.05762 1.69752 1.21882 1.23812 1.38372 0.85623 0.81223 0.80858 0.75816 1.16722 1.17804 1.15510 0.92006 0.86321 0.91059 0.89783 0.87100 0.92268 0.79192 0.75653 0.77457 0.89963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.28 10.35 127.77 1.32 2.60 16 2 N -1.00 -24.10 3.05 -562.70 -1.72 -25.82 16 3 C 0.07 1.27 10.69 127.77 1.37 2.64 16 4 S 2.71 108.57 4.33 -56.49 -0.24 108.32 16 5 O -0.99 -46.50 16.86 -127.97 -2.16 -48.66 16 6 O -0.98 -48.77 14.91 -119.43 -1.78 -50.55 16 7 C -0.64 -22.97 5.87 21.74 0.13 -22.85 16 8 C -0.09 -1.94 9.74 21.09 0.21 -1.73 16 9 C -0.23 -4.11 10.92 66.82 0.73 -3.38 16 10 S 0.27 7.02 22.17 -56.49 -1.25 5.77 16 11 C -0.17 -6.93 6.45 24.07 0.16 -6.77 16 12 C 0.47 25.47 7.69 86.39 0.66 26.13 16 13 O -0.60 -38.80 13.21 16.33 0.22 -38.59 16 14 N -0.55 -28.88 5.08 -310.82 -1.58 -30.46 16 15 C -0.33 -20.46 10.16 84.09 0.85 -19.61 16 16 H 0.07 4.83 7.38 -2.91 -0.02 4.81 16 17 C 0.00 -0.01 5.50 84.94 0.47 0.46 16 18 N -0.90 -53.26 13.96 21.68 0.30 -52.96 16 19 Si 0.95 37.59 27.74 68.60 1.90 39.49 16 20 H -0.24 -8.97 7.11 99.48 0.71 -8.26 16 21 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 22 H -0.23 -7.86 6.52 99.48 0.65 -7.21 16 23 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 24 H 0.12 0.82 8.09 -2.39 -0.02 0.81 16 25 H 0.07 1.27 7.55 -2.39 -0.02 1.25 16 26 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 27 H 0.11 1.17 8.07 -2.39 -0.02 1.15 16 28 H 0.06 1.37 7.07 -2.39 -0.02 1.35 16 29 H 0.19 2.51 7.80 -2.91 -0.02 2.49 16 30 H 0.23 1.69 8.06 -2.91 -0.02 1.67 16 31 H 0.39 16.91 4.89 -92.71 -0.45 16.46 16 32 H 0.29 15.33 8.31 -92.70 -0.77 14.56 16 Total: -1.00 -94.08 302.91 0.24 -93.84 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.66 Total: 22.14 kcal Atomic # 6 Polarization: -28.41 SS G_CDS: 5.89 Total: -22.52 kcal Atomic # 7 Polarization: -106.24 SS G_CDS: -2.99 Total: -109.24 kcal Atomic # 8 Polarization: -134.08 SS G_CDS: -3.72 Total: -137.80 kcal Atomic # 14 Polarization: 37.59 SS G_CDS: 1.90 Total: 39.49 kcal Atomic # 16 Polarization: 115.59 SS G_CDS: -1.50 Total: 114.09 kcal Total: -94.08 0.24 -93.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264660176.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.096 kcal (2) G-P(sol) polarization free energy of solvation -94.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds