Wall clock time and date at job start Tue Mar 31 2020 03:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00051 * 2 1 4 4 H 1.48494 * 109.47460 * 270.00318 * 3 2 1 5 5 H 1.48507 * 109.47042 * 30.00291 * 3 2 1 6 6 H 1.48498 * 109.47395 * 149.99859 * 3 2 1 7 7 C 1.37876 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99627 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00352 * 180.02562 * 7 2 1 10 10 N 1.46502 * 109.47043 * 179.97438 * 9 7 2 11 11 S 1.65598 * 119.99715 * 165.73546 * 10 9 7 12 12 O 1.42096 * 106.40431 * 309.61597 * 11 10 9 13 13 O 1.42099 * 106.40422 * 176.69767 * 11 10 9 14 14 C 1.76198 * 107.21746 * 63.15757 * 11 10 9 15 15 C 1.38483 * 120.01388 * 82.42155 * 14 11 10 16 16 F 1.35100 * 120.02497 * 359.97438 * 15 14 11 17 17 C 1.38436 * 119.94711 * 180.25447 * 15 14 11 18 18 C 1.38226 * 119.97738 * 359.40023 * 17 15 14 19 19 C 1.38227 * 120.01817 * 0.62253 * 18 17 15 20 20 C 1.38179 * 120.01164 * 262.39363 * 14 11 10 21 21 N 1.47998 * 119.98981 * 0.02915 * 20 14 11 22 22 O 1.21795 * 120.00026 * 233.39208 * 21 20 14 23 23 O 1.21797 * 120.00102 * 53.38319 * 21 20 14 24 24 H 0.96998 * 119.99991 * 359.97438 * 1 2 3 25 25 H 1.08991 * 109.47287 * 59.99543 * 9 7 2 26 26 H 1.09004 * 109.46705 * 299.99466 * 9 7 2 27 27 H 0.96999 * 120.00270 * 345.74287 * 10 9 7 28 28 H 1.08002 * 120.01351 * 179.69823 * 17 15 14 29 29 H 1.07994 * 119.99115 * 180.31636 * 18 17 15 30 30 H 1.08002 * 119.96905 * 179.70228 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9998 -2.5753 -0.0001 11 16 5.5864 -2.8925 -0.3529 12 8 5.8735 -2.2053 -1.5630 13 8 5.7602 -4.2939 -0.1950 14 6 6.5622 -2.1261 0.8981 15 6 6.7604 -2.7651 2.1106 16 9 6.2054 -3.9762 2.3352 17 6 7.5230 -2.1594 3.0945 18 6 8.0959 -0.9233 2.8612 19 6 7.8969 -0.2862 1.6507 20 6 7.1304 -0.8875 0.6695 21 7 6.9188 -0.2042 -0.6261 22 8 7.8748 0.1852 -1.2725 23 8 5.7886 -0.0315 -1.0461 24 1 -0.4850 0.8400 0.0004 25 1 3.8745 -0.6808 0.8904 26 1 3.8751 -0.6796 -0.8895 27 1 3.3938 -3.3040 0.2064 28 1 7.6742 -2.6546 4.0423 29 1 8.6950 -0.4528 3.6267 30 1 8.3409 0.6818 1.4711 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336786673.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:59 Heat of formation + Delta-G solvation = -66.023205 kcal Electronic energy + Delta-G solvation = -23824.515277 eV Core-core repulsion = 19859.328646 eV Total energy + Delta-G solvation = -3965.186630 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 304.041 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.63632 -42.13103 -39.49332 -37.17172 -36.29777 -35.77084 -34.87298 -32.61100 -32.23681 -31.57474 -27.44813 -26.89131 -24.16216 -22.97868 -22.04931 -20.13900 -19.26307 -18.65069 -18.16362 -17.96787 -17.46784 -16.88166 -16.48650 -16.40961 -16.03445 -15.69259 -15.56078 -14.58174 -14.11508 -13.57797 -13.34862 -13.23773 -13.03018 -12.94246 -12.53836 -12.19059 -12.02822 -11.91659 -11.47269 -11.37974 -10.97406 -10.86241 -10.69299 -10.66240 -10.34859 -9.94294 -9.72486 -9.46586 -8.99537 -8.54864 -6.18090 -4.19573 -0.42484 0.07236 0.38231 0.89180 1.18601 2.43971 3.13252 3.28921 3.35418 3.36871 3.40582 3.67292 3.73470 3.96906 4.27853 4.35200 4.36559 4.70143 4.82574 5.00084 5.12174 5.16463 5.28493 5.76719 6.06441 6.36049 6.80593 7.00544 7.35898 7.71282 7.76251 8.36185 8.82359 9.39995 10.93919 Molecular weight = 304.04amu Principal moments of inertia in cm(-1) A = 0.015164 B = 0.007241 C = 0.006530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.054969 B = 3866.165379 C = 4286.871926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.078 3.922 3 Si 0.872 3.128 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.531 4.531 8 H 0.083 0.917 9 C 0.213 3.787 10 N -1.077 6.077 11 S 2.674 3.326 12 O -0.937 6.937 13 O -0.951 6.951 14 C -0.682 4.682 15 C 0.215 3.785 16 F -0.097 7.097 17 C -0.138 4.138 18 C -0.032 4.032 19 C -0.097 4.097 20 C 0.089 3.911 21 N 0.006 4.994 22 O -0.147 6.147 23 O -0.077 6.077 24 H 0.267 0.733 25 H 0.012 0.988 26 H 0.058 0.942 27 H 0.419 0.581 28 H 0.164 0.836 29 H 0.164 0.836 30 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.421 -1.532 8.780 19.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.698 3.302 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.571 4.571 8 H 0.101 0.899 9 C 0.089 3.911 10 N -0.843 5.843 11 S 2.754 3.246 12 O -0.926 6.926 13 O -0.941 6.941 14 C -0.763 4.763 15 C 0.194 3.806 16 F -0.075 7.075 17 C -0.157 4.157 18 C -0.051 4.051 19 C -0.117 4.117 20 C 0.007 3.993 21 N 0.535 4.465 22 O -0.361 6.361 23 O -0.307 6.307 24 H 0.077 0.923 25 H 0.030 0.970 26 H 0.076 0.924 27 H 0.256 0.744 28 H 0.181 0.819 29 H 0.182 0.818 30 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 17.915 -2.097 8.756 20.051 hybrid contribution 0.052 0.938 0.596 1.113 sum 17.968 -1.159 9.353 20.289 Atomic orbital electron populations 1.69873 1.06177 1.27352 1.49530 1.24807 0.94783 0.99032 0.94011 0.86896 0.80064 0.83461 0.79749 1.18909 1.21132 1.18934 1.21014 0.87908 0.95256 1.52874 0.89926 1.19778 0.97663 0.76316 0.97326 1.55187 1.24005 1.17762 1.87301 1.02918 0.73977 0.73390 0.74311 1.93714 1.84464 1.75033 1.39418 1.93606 1.85833 1.28309 1.86329 1.31216 1.20251 1.06684 1.18165 1.16748 0.91706 0.80908 0.91280 1.91722 1.82088 1.39425 1.94250 1.21648 0.97547 0.96602 0.99934 1.21303 0.95220 0.92898 0.95664 1.21100 0.96621 1.01740 0.92239 1.20304 0.99899 0.92542 0.86579 1.43470 1.01519 1.00327 1.01213 1.94512 1.33972 1.52216 1.55399 1.94682 1.08130 1.56754 1.71142 0.92269 0.96992 0.92397 0.74380 0.81883 0.81814 0.82320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.96 55.43 0.77 -25.59 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 3 Si 0.87 21.01 27.47 -169.99 -4.67 16.34 16 4 H -0.26 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 7 C -0.53 -14.47 9.83 -34.44 -0.34 -14.80 16 8 H 0.08 2.36 7.89 -52.48 -0.41 1.95 16 9 C 0.21 4.99 4.12 -5.19 -0.02 4.97 16 10 N -1.08 -21.58 5.99 -11.66 -0.07 -21.65 16 11 S 2.67 50.29 5.30 -107.50 -0.57 49.72 16 12 O -0.94 -19.99 13.43 -67.17 -0.90 -20.89 16 13 O -0.95 -18.39 16.52 -57.18 -0.94 -19.33 16 14 C -0.68 -10.79 5.90 -39.51 -0.23 -11.02 16 15 C 0.22 2.78 7.20 -39.42 -0.28 2.50 16 16 F -0.10 -1.35 15.60 2.25 0.04 -1.31 16 17 C -0.14 -1.16 10.03 -39.51 -0.40 -1.56 16 18 C -0.03 -0.23 10.04 -39.59 -0.40 -0.63 16 19 C -0.10 -1.01 9.86 -39.58 -0.39 -1.40 16 20 C 0.09 1.35 6.23 -79.97 -0.50 0.85 16 21 N 0.01 0.12 3.15 33.95 0.11 0.23 16 22 O -0.15 -2.64 19.17 -29.46 -0.56 -3.20 16 23 O -0.08 -1.65 12.74 -37.23 -0.47 -2.12 16 24 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.01 0.28 7.20 -51.93 -0.37 -0.10 16 26 H 0.06 1.41 4.90 -51.93 -0.25 1.16 16 27 H 0.42 7.73 8.53 -34.47 -0.29 7.44 16 28 H 0.16 0.77 8.06 -52.49 -0.42 0.34 16 29 H 0.16 0.41 8.06 -52.49 -0.42 -0.01 16 30 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 283.77 15.07 4.28 4.28 Total: -1.00 -34.39 283.77 -7.43 -41.82 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -1.77 Total: 0.72 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: -2.66 Total: -19.01 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: 0.81 Total: -47.01 kcal Atomic # 8 Polarization: -42.66 SS G_CDS: -2.89 Total: -45.54 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.34 kcal Atomic # 16 Polarization: 50.29 SS G_CDS: -0.57 Total: 49.72 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -34.39 -7.43 -41.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336786673.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.203 kcal (2) G-P(sol) polarization free energy of solvation -34.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds