Wall clock time and date at job start Tue Mar 31 2020 03:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00051 * 2 1 4 4 H 1.48494 * 109.47460 * 270.00318 * 3 2 1 5 5 H 1.48507 * 109.47042 * 30.00291 * 3 2 1 6 6 H 1.48498 * 109.47395 * 149.99859 * 3 2 1 7 7 C 1.37876 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99627 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00352 * 180.02562 * 7 2 1 10 10 N 1.46502 * 109.47043 * 179.97438 * 9 7 2 11 11 S 1.65598 * 119.99715 * 165.73546 * 10 9 7 12 12 O 1.42096 * 106.40431 * 309.61597 * 11 10 9 13 13 O 1.42099 * 106.40422 * 176.69767 * 11 10 9 14 14 C 1.76198 * 107.21746 * 63.15757 * 11 10 9 15 15 C 1.38483 * 120.01388 * 82.42155 * 14 11 10 16 16 F 1.35100 * 120.02497 * 359.97438 * 15 14 11 17 17 C 1.38436 * 119.94711 * 180.25447 * 15 14 11 18 18 C 1.38226 * 119.97738 * 359.40023 * 17 15 14 19 19 C 1.38227 * 120.01817 * 0.62253 * 18 17 15 20 20 C 1.38179 * 120.01164 * 262.39363 * 14 11 10 21 21 N 1.47998 * 119.98981 * 0.02915 * 20 14 11 22 22 O 1.21795 * 120.00026 * 233.39208 * 21 20 14 23 23 O 1.21797 * 120.00102 * 53.38319 * 21 20 14 24 24 H 0.96998 * 119.99991 * 359.97438 * 1 2 3 25 25 H 1.08991 * 109.47287 * 59.99543 * 9 7 2 26 26 H 1.09004 * 109.46705 * 299.99466 * 9 7 2 27 27 H 0.96999 * 120.00270 * 345.74287 * 10 9 7 28 28 H 1.08002 * 120.01351 * 179.69823 * 17 15 14 29 29 H 1.07994 * 119.99115 * 180.31636 * 18 17 15 30 30 H 1.08002 * 119.96905 * 179.70228 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9998 -2.5753 -0.0001 11 16 5.5864 -2.8925 -0.3529 12 8 5.8735 -2.2053 -1.5630 13 8 5.7602 -4.2939 -0.1950 14 6 6.5622 -2.1261 0.8981 15 6 6.7604 -2.7651 2.1106 16 9 6.2054 -3.9762 2.3352 17 6 7.5230 -2.1594 3.0945 18 6 8.0959 -0.9233 2.8612 19 6 7.8969 -0.2862 1.6507 20 6 7.1304 -0.8875 0.6695 21 7 6.9188 -0.2042 -0.6261 22 8 7.8748 0.1852 -1.2725 23 8 5.7886 -0.0315 -1.0461 24 1 -0.4850 0.8400 0.0004 25 1 3.8745 -0.6808 0.8904 26 1 3.8751 -0.6796 -0.8895 27 1 3.3938 -3.3040 0.2064 28 1 7.6742 -2.6546 4.0423 29 1 8.6950 -0.4528 3.6267 30 1 8.3409 0.6818 1.4711 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336786673.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:58 Heat of formation + Delta-G solvation = -92.656635 kcal Electronic energy + Delta-G solvation = -23825.670189 eV Core-core repulsion = 19859.328646 eV Total energy + Delta-G solvation = -3966.341543 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 304.041 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.62031 -43.39009 -40.38899 -38.68916 -37.65601 -37.30788 -36.65998 -34.30932 -33.51596 -32.47510 -29.42873 -28.01929 -25.06413 -24.26099 -23.79373 -21.43109 -20.56660 -19.91661 -19.69081 -19.19322 -18.79475 -18.12354 -17.87796 -17.61855 -17.29785 -17.08847 -16.51689 -16.28601 -15.39538 -14.97819 -14.84384 -14.55340 -14.25183 -14.09940 -13.93266 -13.72592 -13.55831 -13.47716 -12.83817 -12.79969 -12.72509 -12.50927 -12.20173 -12.11801 -11.83822 -11.55268 -11.18647 -10.93517 -10.62275 -10.44750 -8.35020 -6.41263 -1.46417 -1.07390 -0.76638 -0.32977 0.06804 1.34020 1.42558 1.48720 1.57842 1.78120 2.28620 2.33137 2.47740 2.65642 3.00282 3.25489 3.43821 3.48077 3.63724 4.03422 4.20008 4.35050 4.56682 4.62850 4.85778 4.93416 5.11960 5.22620 5.44650 6.02136 6.21061 6.31306 6.63932 7.22130 8.80343 Molecular weight = 304.04amu Principal moments of inertia in cm(-1) A = 0.015164 B = 0.007241 C = 0.006530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.054969 B = 3866.165379 C = 4286.871926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.024 3.976 3 Si 0.929 3.071 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.244 1.244 7 C -0.541 4.541 8 H 0.053 0.947 9 C 0.227 3.773 10 N -1.087 6.087 11 S 2.685 3.315 12 O -0.971 6.971 13 O -0.966 6.966 14 C -0.708 4.708 15 C 0.198 3.802 16 F -0.110 7.110 17 C -0.114 4.114 18 C 0.003 3.997 19 C -0.084 4.084 20 C 0.055 3.945 21 N 0.008 4.992 22 O -0.122 6.122 23 O -0.159 6.159 24 H 0.271 0.729 25 H 0.025 0.975 26 H 0.050 0.950 27 H 0.422 0.578 28 H 0.212 0.788 29 H 0.230 0.770 30 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.211 -0.094 12.210 24.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.176 4.176 3 Si 0.752 3.248 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.167 1.167 7 C -0.581 4.581 8 H 0.071 0.929 9 C 0.102 3.898 10 N -0.850 5.850 11 S 2.772 3.228 12 O -0.961 6.961 13 O -0.956 6.956 14 C -0.796 4.796 15 C 0.177 3.823 16 F -0.088 7.088 17 C -0.133 4.133 18 C -0.015 4.015 19 C -0.103 4.103 20 C -0.027 4.027 21 N 0.531 4.469 22 O -0.348 6.348 23 O -0.371 6.371 24 H 0.081 0.919 25 H 0.042 0.958 26 H 0.068 0.932 27 H 0.258 0.742 28 H 0.229 0.771 29 H 0.247 0.753 30 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 21.518 -0.712 12.146 24.719 hybrid contribution -0.857 0.414 -0.320 1.004 sum 20.661 -0.298 11.826 23.808 Atomic orbital electron populations 1.69996 1.07859 1.28529 1.51100 1.25652 0.95561 1.02753 0.93638 0.85977 0.79741 0.79137 0.79956 1.19131 1.19832 1.16729 1.21313 0.90162 0.94312 1.52273 0.92921 1.19428 0.94885 0.78059 0.97413 1.55070 1.25467 1.16582 1.87912 1.02008 0.73441 0.72975 0.74354 1.93669 1.84639 1.75407 1.42377 1.93579 1.85861 1.29317 1.86870 1.30479 1.22281 1.08119 1.18694 1.17233 0.92855 0.80780 0.91476 1.91694 1.82572 1.40290 1.94204 1.22321 0.94354 0.96596 0.99988 1.22158 0.92986 0.91400 0.94975 1.21772 0.94160 1.02639 0.91741 1.20489 1.03292 0.93021 0.85868 1.43931 1.00869 0.99781 1.02298 1.94443 1.33542 1.50861 1.55982 1.94684 1.08928 1.60255 1.73221 0.91948 0.95765 0.93214 0.74168 0.77133 0.75306 0.79347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.13 13.96 21.45 0.30 -56.83 16 2 C 0.02 1.37 5.47 84.66 0.46 1.84 16 3 Si 0.93 43.73 27.47 68.60 1.88 45.61 16 4 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 5 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.24 -10.55 6.54 99.48 0.65 -9.90 16 7 C -0.54 -30.79 9.83 25.60 0.25 -30.53 16 8 H 0.05 3.21 7.89 -2.91 -0.02 3.19 16 9 C 0.23 10.99 4.12 85.63 0.35 11.34 16 10 N -1.09 -45.76 5.99 -190.79 -1.14 -46.90 16 11 S 2.69 104.74 5.30 -56.49 -0.30 104.45 16 12 O -0.97 -43.66 13.43 -118.45 -1.59 -45.25 16 13 O -0.97 -38.68 16.52 -128.00 -2.11 -40.79 16 14 C -0.71 -21.58 5.90 22.31 0.13 -21.45 16 15 C 0.20 4.55 7.20 22.38 0.16 4.71 16 16 F -0.11 -2.88 15.60 44.97 0.70 -2.18 16 17 C -0.11 -1.17 10.03 22.31 0.22 -0.95 16 18 C 0.00 0.02 10.04 22.26 0.22 0.24 16 19 C -0.08 -1.26 9.86 22.27 0.22 -1.04 16 20 C 0.06 1.56 6.23 36.37 0.23 1.79 16 21 N 0.01 0.28 3.15 -46.49 -0.15 0.13 16 22 O -0.12 -4.25 19.17 18.89 0.36 -3.88 16 23 O -0.16 -6.94 12.74 26.31 0.34 -6.60 16 24 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 25 H 0.02 1.12 7.20 -2.39 -0.02 1.10 16 26 H 0.05 2.54 4.90 -2.39 -0.01 2.52 16 27 H 0.42 16.69 8.53 -96.75 -0.83 15.87 16 28 H 0.21 0.23 8.06 -2.91 -0.02 0.21 16 29 H 0.23 -1.36 8.06 -2.91 -0.02 -1.39 16 30 H 0.19 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -82.60 283.77 0.89 -81.71 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: 0.35 Total: 4.60 kcal Atomic # 6 Polarization: -36.32 SS G_CDS: 2.25 Total: -34.06 kcal Atomic # 7 Polarization: -102.61 SS G_CDS: -0.99 Total: -103.60 kcal Atomic # 8 Polarization: -93.52 SS G_CDS: -3.01 Total: -96.53 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.70 Total: -2.18 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.88 Total: 45.61 kcal Atomic # 16 Polarization: 104.74 SS G_CDS: -0.30 Total: 104.45 kcal Total: -82.60 0.89 -81.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336786673.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.944 kcal (2) G-P(sol) polarization free energy of solvation -82.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds