Wall clock time and date at job start Tue Mar 31 2020 03:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 119.99816 * 2 1 4 4 H 1.48495 * 109.47535 * 270.00382 * 3 2 1 5 5 H 1.48505 * 109.47206 * 30.00450 * 3 2 1 6 6 H 1.48501 * 109.47225 * 150.00125 * 3 2 1 7 7 C 1.37876 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00399 * 0.02562 * 7 2 1 9 9 C 1.50708 * 119.99987 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.47142 * 180.02562 * 9 7 2 11 11 N 1.46504 * 109.47049 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99961 * 179.97438 * 11 10 9 13 13 O 1.21634 * 119.99812 * 0.02562 * 12 11 10 14 14 C 1.47186 * 119.99972 * 179.97438 * 12 11 10 15 15 C 1.36008 * 123.46200 * 359.97438 * 14 12 11 16 16 S 1.70448 * 110.81733 * 179.74651 * 15 14 12 17 17 C 1.75504 * 92.44491 * 0.35384 * 16 15 14 18 18 S 1.76193 * 124.71113 * 179.90589 * 17 16 15 19 19 N 1.65606 * 107.21910 * 269.70122 * 18 17 16 20 20 O 1.42105 * 106.40403 * 23.24011 * 18 17 16 21 21 O 1.42098 * 106.40145 * 156.15940 * 18 17 16 22 22 C 1.32770 * 110.57559 * 359.64284 * 17 16 15 23 23 H 0.96999 * 120.00685 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46565 * 59.99946 * 9 7 2 25 25 H 1.09007 * 109.46989 * 300.00864 * 9 7 2 26 26 H 1.08996 * 109.47513 * 59.99915 * 10 9 7 27 27 H 1.09000 * 109.46777 * 299.99646 * 10 9 7 28 28 H 0.96998 * 120.00097 * 0.02562 * 11 10 9 29 29 H 1.08001 * 124.59231 * 0.05320 * 15 14 12 30 30 H 0.97000 * 120.00111 * 180.02562 * 19 18 17 31 31 H 0.96998 * 119.99947 * 359.97438 * 19 18 17 32 32 H 1.07994 * 123.46110 * 180.28790 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0023 11 7 5.4866 -2.6364 -0.0022 12 6 6.1606 -3.8035 -0.0026 13 8 5.5524 -4.8569 -0.0035 14 6 7.6324 -3.8035 -0.0032 15 6 8.3823 -2.6688 -0.0038 16 16 10.0454 -3.0419 0.0028 17 6 9.7348 -4.7692 -0.0043 18 16 10.9826 -6.0130 -0.0049 19 7 11.3289 -6.3593 -1.5870 20 8 12.1495 -5.4111 0.5387 21 8 10.3849 -7.1813 0.5400 22 6 8.4288 -5.0084 -0.0035 23 1 -0.4851 0.8400 0.0004 24 1 3.8752 -0.6803 0.8889 25 1 3.8746 -0.6798 -0.8911 26 1 3.6580 -3.1497 -0.8924 27 1 3.6586 -3.1508 0.8875 28 1 5.9716 -1.7963 -0.0012 29 1 7.9786 -1.6671 -0.0031 30 1 11.9985 -7.0274 -1.8019 31 1 10.8616 -5.8946 -2.2986 32 1 8.0054 -6.0019 -0.0027 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344672507.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:14 Heat of formation + Delta-G solvation = -119.601961 kcal Electronic energy + Delta-G solvation = -19373.931635 eV Core-core repulsion = 15972.634831 eV Total energy + Delta-G solvation = -3401.296804 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 304.038 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.03984 -38.43648 -38.03206 -37.02508 -36.69850 -34.85994 -34.09847 -32.54092 -31.02679 -27.29215 -25.94239 -23.51932 -22.59335 -20.85602 -20.48706 -19.89505 -19.01962 -18.42932 -18.20004 -17.76417 -16.73567 -16.61934 -16.58475 -16.33687 -16.13836 -15.19289 -15.13219 -14.61125 -14.41733 -14.17242 -14.03069 -13.36781 -13.30103 -13.28306 -13.18430 -13.05654 -12.71148 -12.40897 -12.21000 -12.18446 -11.76969 -11.53478 -11.39769 -11.07390 -10.79683 -10.75453 -10.18834 -9.60405 -8.30496 -6.38416 -0.85208 -0.66241 0.17178 0.42653 0.54926 1.38681 1.42066 1.52879 2.04437 2.15209 2.17808 2.36532 2.56089 3.04675 3.56447 3.69804 3.85367 4.02057 4.32383 4.37538 4.39842 4.51866 4.72084 4.84126 5.08425 5.25103 5.36409 5.38557 5.61161 6.20762 6.31339 6.49127 6.69987 7.13685 7.26311 8.86418 Molecular weight = 304.04amu Principal moments of inertia in cm(-1) A = 0.036297 B = 0.002785 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.234025 B =10052.669684 C =10629.448360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.002 3.998 3 Si 0.961 3.039 4 H -0.264 1.264 5 H -0.289 1.289 6 H -0.234 1.234 7 C -0.541 4.541 8 H 0.027 0.973 9 C -0.012 4.012 10 C 0.144 3.856 11 N -0.707 5.707 12 C 0.568 3.432 13 O -0.586 6.586 14 C -0.202 4.202 15 C -0.162 4.162 16 S 0.380 5.620 17 C -0.827 4.827 18 S 2.754 3.246 19 N -1.232 6.232 20 O -0.981 6.981 21 O -0.992 6.992 22 C 0.054 3.946 23 H 0.268 0.732 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.048 0.952 27 H 0.045 0.955 28 H 0.414 0.586 29 H 0.213 0.787 30 H 0.433 0.567 31 H 0.431 0.569 32 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.106 -4.159 -4.402 30.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.195 4.195 3 Si 0.783 3.217 4 H -0.189 1.189 5 H -0.215 1.215 6 H -0.156 1.156 7 C -0.579 4.579 8 H 0.046 0.954 9 C -0.050 4.050 10 C 0.020 3.980 11 N -0.358 5.358 12 C 0.355 3.645 13 O -0.467 6.467 14 C -0.220 4.220 15 C -0.303 4.303 16 S 0.648 5.352 17 C -1.028 5.028 18 S 2.839 3.161 19 N -0.914 5.914 20 O -0.970 6.970 21 O -0.981 6.981 22 C 0.020 3.980 23 H 0.077 0.923 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.251 0.749 29 H 0.230 0.770 30 H 0.266 0.734 31 H 0.261 0.739 32 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 31.194 -4.228 -3.449 31.667 hybrid contribution -2.464 0.253 -0.581 2.545 sum 28.729 -3.975 -4.030 29.282 Atomic orbital electron populations 1.70078 1.08703 1.28483 1.51906 1.26119 0.95695 1.04015 0.93635 0.85517 0.79725 0.77105 0.79375 1.18858 1.21503 1.15635 1.21258 0.91656 0.93358 1.51671 0.95413 1.19657 0.94380 0.92674 0.98285 1.21095 0.77824 0.98750 1.00288 1.45868 1.07615 1.08547 1.73807 1.17999 0.87031 0.83622 0.75875 1.90788 1.70896 1.32691 1.52370 1.20245 0.92964 0.93665 1.15120 1.26715 1.01612 1.04137 0.97837 1.82894 0.98518 0.90856 1.62941 1.35331 1.15985 1.19797 1.31701 0.99924 0.71630 0.71880 0.72696 1.52615 1.56570 1.56915 1.25253 1.93597 1.47427 1.78104 1.77855 1.93596 1.78416 1.48045 1.78034 1.20991 0.90152 0.99849 0.87006 0.92328 0.94297 0.94270 0.93390 0.93653 0.74915 0.76995 0.73364 0.73911 0.82237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.68 13.96 21.45 0.30 -58.38 16 2 C 0.00 0.13 5.47 84.66 0.46 0.60 16 3 Si 0.96 40.83 27.47 68.60 1.88 42.71 16 4 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 5 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.23 -8.61 6.54 99.48 0.65 -7.96 16 7 C -0.54 -30.22 9.66 25.60 0.25 -29.98 16 8 H 0.03 1.75 7.99 -2.91 -0.02 1.73 16 9 C -0.01 -0.52 4.16 29.85 0.12 -0.39 16 10 C 0.14 5.66 5.61 86.38 0.48 6.14 16 11 N -0.71 -20.86 5.52 -466.61 -2.58 -23.44 16 12 C 0.57 17.74 7.79 86.59 0.67 18.42 16 13 O -0.59 -23.82 16.80 -4.14 -0.07 -23.89 16 14 C -0.20 -4.47 5.98 -19.87 -0.12 -4.59 16 15 C -0.16 -2.20 10.38 67.30 0.70 -1.50 16 16 S 0.38 4.19 22.86 -56.49 -1.29 2.90 16 17 C -0.83 -13.18 6.48 66.64 0.43 -12.75 16 18 S 2.75 42.56 6.42 -56.49 -0.36 42.19 16 19 N -1.23 -8.17 9.55 37.02 0.35 -7.82 16 20 O -0.98 -19.49 17.88 -128.00 -2.29 -21.78 16 21 O -0.99 -23.55 17.77 -128.00 -2.27 -25.82 16 22 C 0.05 1.14 9.72 22.67 0.22 1.36 16 23 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 24 H 0.04 1.54 7.20 -2.39 -0.02 1.52 16 25 H 0.04 1.51 7.57 -2.38 -0.02 1.49 16 26 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.41 8.71 6.97 -92.71 -0.65 8.07 16 29 H 0.21 1.46 7.01 -2.91 -0.02 1.44 16 30 H 0.43 1.31 8.96 -96.74 -0.87 0.44 16 31 H 0.43 0.89 8.92 -96.74 -0.86 0.03 16 32 H 0.16 3.63 8.05 -2.91 -0.02 3.61 16 Total: -1.00 -84.41 311.49 -4.32 -88.74 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -1.22 Total: 7.28 kcal Atomic # 6 Polarization: -25.92 SS G_CDS: 3.23 Total: -22.70 kcal Atomic # 7 Polarization: -87.72 SS G_CDS: -1.93 Total: -89.64 kcal Atomic # 8 Polarization: -66.85 SS G_CDS: -4.63 Total: -71.49 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 1.88 Total: 42.71 kcal Atomic # 16 Polarization: 46.75 SS G_CDS: -1.65 Total: 45.10 kcal Total: -84.41 -4.32 -88.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344672507.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.862 kcal (2) G-P(sol) polarization free energy of solvation -84.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds