Wall clock time and date at job start Tue Mar 31 2020 03:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48494 * 109.47196 * 239.99790 * 3 2 1 5 5 H 1.48494 * 109.47285 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46819 * 120.00287 * 3 2 1 7 7 C 1.37876 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99840 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00339 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47324 * 179.97438 * 9 7 2 11 11 C 1.34779 * 120.00169 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99922 * 359.97438 * 11 10 9 13 13 C 1.50699 * 120.00037 * 179.97438 * 11 10 9 14 14 N 1.46506 * 109.46928 * 179.97438 * 13 11 10 15 15 S 1.65596 * 119.99677 * 165.00101 * 14 13 11 16 16 O 1.42106 * 106.40283 * 178.54151 * 15 14 13 17 17 O 1.42105 * 106.40421 * 311.45913 * 15 14 13 18 18 C 1.76198 * 107.22309 * 65.00118 * 15 14 13 19 19 C 1.33386 * 125.20236 * 89.99215 * 18 15 14 20 20 C 1.38427 * 114.92036 * 179.97438 * 19 18 15 21 21 C 1.33386 * 114.92159 * 0.02562 * 20 19 18 22 22 S 1.75879 * 125.20398 * 269.69841 * 18 15 14 23 23 H 0.97005 * 120.00032 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47043 * 59.99933 * 9 7 2 25 25 H 1.09004 * 109.47476 * 300.00008 * 9 7 2 26 26 H 0.96996 * 119.99986 * 359.97438 * 10 9 7 27 27 H 1.09004 * 109.47103 * 59.99751 * 13 11 10 28 28 H 1.09000 * 109.47247 * 299.99628 * 13 11 10 29 29 H 0.96996 * 120.00063 * 345.00522 * 14 13 11 30 30 H 1.07999 * 122.54429 * 359.97036 * 19 18 15 31 31 H 1.08003 * 122.54021 * 180.02562 * 20 19 18 32 32 H 1.08001 * 125.20201 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 7 2.2030 -3.6127 -0.0027 11 6 1.7538 -4.8834 -0.0044 12 8 0.5613 -5.1050 -0.0046 13 6 2.7330 -6.0288 -0.0060 14 7 2.0005 -7.2976 -0.0070 15 16 2.7860 -8.7068 -0.3799 16 8 1.8242 -9.7461 -0.2607 17 8 3.5153 -8.4560 -1.5735 18 6 3.9814 -8.9880 0.8836 19 6 3.7656 -9.6731 2.0076 20 6 4.8570 -9.7633 2.8543 21 6 5.9589 -9.1511 2.4182 22 16 5.6437 -8.4144 0.8525 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5563 -0.8920 25 1 0.6240 -2.5576 0.8880 26 1 3.1566 -3.4355 -0.0029 27 1 3.3598 -5.9722 0.8841 28 1 3.3596 -5.9699 -0.8959 29 1 1.0554 -7.3121 0.2107 30 1 2.8117 -10.1232 2.2395 31 1 4.8192 -10.2896 3.7967 32 1 6.9018 -9.1174 2.9438 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358588597.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:13 Heat of formation + Delta-G solvation = -78.186195 kcal Electronic energy + Delta-G solvation = -19712.227387 eV Core-core repulsion = 16312.726506 eV Total energy + Delta-G solvation = -3399.500881 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 304.038 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.09948 -38.20001 -37.30482 -36.02544 -34.90392 -34.14893 -32.42097 -30.25610 -28.32726 -26.11697 -24.79475 -22.56597 -20.77975 -19.99739 -19.48277 -18.87288 -18.02990 -16.97051 -16.42585 -16.15206 -15.61035 -15.35350 -15.09528 -15.00531 -14.63730 -13.79012 -13.62954 -13.33444 -13.14666 -12.90668 -12.86743 -12.25273 -12.20065 -12.16626 -11.98267 -11.79114 -11.70651 -11.20459 -11.05176 -10.91296 -10.37885 -9.85167 -9.70183 -9.48208 -9.27917 -8.92921 -8.80268 -8.02138 -6.21467 -4.29083 0.00548 0.28726 1.07765 1.42304 2.09688 2.83676 3.13289 3.22558 3.27721 3.28951 3.54363 3.89860 4.30211 4.36931 4.49851 4.87040 4.94467 5.00730 5.14783 5.25623 5.30871 5.41781 5.59123 5.66251 5.87109 6.89479 7.21047 7.27672 7.43375 7.58092 7.90198 8.47096 8.67314 8.92529 9.37430 10.88611 Molecular weight = 304.04amu Principal moments of inertia in cm(-1) A = 0.022375 B = 0.003212 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.117474 B = 8713.905284 C = 9399.133896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.706 5.706 11 C 0.498 3.502 12 O -0.547 6.547 13 C 0.093 3.907 14 N -1.098 6.098 15 S 2.725 3.275 16 O -0.950 6.950 17 O -0.950 6.950 18 C -0.796 4.796 19 C 0.009 3.991 20 C -0.164 4.164 21 C -0.175 4.175 22 S 0.217 5.783 23 H 0.267 0.733 24 H 0.029 0.971 25 H 0.029 0.971 26 H 0.394 0.606 27 H 0.091 0.909 28 H 0.107 0.893 29 H 0.430 0.570 30 H 0.156 0.844 31 H 0.150 0.850 32 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.165 -18.507 5.431 23.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.585 4.585 8 H 0.082 0.918 9 C 0.129 3.871 10 N -0.355 5.355 11 C 0.281 3.719 12 O -0.426 6.426 13 C -0.037 4.037 14 N -0.863 5.863 15 S 2.810 3.190 16 O -0.940 6.940 17 O -0.940 6.940 18 C -0.996 4.996 19 C -0.026 4.026 20 C -0.195 4.195 21 C -0.313 4.313 22 S 0.482 5.518 23 H 0.077 0.923 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.227 0.773 27 H 0.109 0.891 28 H 0.125 0.875 29 H 0.270 0.730 30 H 0.174 0.826 31 H 0.167 0.833 32 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 13.066 -18.154 3.644 22.662 hybrid contribution 0.133 0.357 1.922 1.960 sum 13.199 -17.798 5.566 22.846 Atomic orbital electron populations 1.69960 1.06138 1.27537 1.48581 1.24951 0.94923 0.99499 0.94591 0.86452 0.79400 0.82208 0.78715 1.20002 1.21067 1.20062 1.21172 0.93288 0.90355 1.53648 0.91806 1.19171 0.88240 0.81746 0.97985 1.46428 1.11494 1.05825 1.71718 1.20154 0.89296 0.84397 0.78073 1.90662 1.16474 1.84420 1.51064 1.21175 0.94752 0.83705 1.04071 1.55180 1.22668 1.20044 1.88383 1.01093 0.72700 0.72194 0.73024 1.93606 1.59471 1.54263 1.86690 1.93611 1.73672 1.84954 1.41735 1.36022 1.17889 1.22142 1.23557 1.20087 1.00447 0.92173 0.89937 1.20453 0.92450 1.04162 1.02477 1.26289 1.03294 1.02063 0.99617 1.84316 1.01189 1.50945 1.15304 0.92312 0.95268 0.95302 0.77342 0.89092 0.87516 0.73047 0.82648 0.83261 0.80908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.51 13.29 55.43 0.74 -24.78 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.91 20.32 29.54 -169.99 -5.02 15.30 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.55 -14.29 9.28 -34.44 -0.32 -14.61 16 8 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 9 C 0.25 6.32 5.43 -5.20 -0.03 6.29 16 10 N -0.71 -13.75 5.55 -61.47 -0.34 -14.10 16 11 C 0.50 9.12 7.90 -10.99 -0.09 9.03 16 12 O -0.55 -12.16 15.73 5.56 0.09 -12.07 16 13 C 0.09 1.20 6.70 -5.19 -0.03 1.16 16 14 N -1.10 -14.00 5.93 -11.65 -0.07 -14.07 16 15 S 2.73 33.63 5.88 -107.50 -0.63 32.99 16 16 O -0.95 -13.74 17.80 -57.17 -1.02 -14.76 16 17 O -0.95 -13.87 17.38 -57.17 -0.99 -14.86 16 18 C -0.80 -8.13 6.55 29.04 0.19 -7.94 16 19 C 0.01 0.08 9.84 -41.21 -0.41 -0.33 16 20 C -0.16 -1.18 10.18 -41.21 -0.42 -1.60 16 21 C -0.17 -1.18 11.23 29.04 0.33 -0.86 16 22 S 0.22 1.89 23.21 -107.50 -2.50 -0.60 16 23 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 24 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.39 6.33 8.32 -40.82 -0.34 5.99 16 27 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.11 1.20 7.75 -51.93 -0.40 0.80 16 29 H 0.43 5.73 7.70 -34.47 -0.27 5.46 16 30 H 0.16 1.15 8.05 -52.49 -0.42 0.73 16 31 H 0.15 0.70 8.06 -52.48 -0.42 0.28 16 32 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 LS Contribution 316.47 15.07 4.77 4.77 Total: -1.00 -34.90 316.47 -8.93 -43.83 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -3.08 Total: 5.54 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -0.88 Total: -7.20 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: 0.33 Total: -52.94 kcal Atomic # 8 Polarization: -39.77 SS G_CDS: -1.92 Total: -41.69 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: 35.52 SS G_CDS: -3.13 Total: 32.39 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.90 -8.93 -43.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358588597.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.360 kcal (2) G-P(sol) polarization free energy of solvation -34.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds