Wall clock time and date at job start Tue Mar 31 2020 03:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46492 * 109.46943 * 2 1 4 4 C 1.36890 * 120.00147 * 94.33416 * 3 2 1 5 5 H 1.08002 * 119.99748 * 172.45129 * 4 3 2 6 6 C 1.38998 * 120.00020 * 352.45095 * 4 3 2 7 7 N 1.31405 * 120.00006 * 334.09828 * 6 4 3 8 8 Si 1.86803 * 120.00270 * 154.09056 * 6 4 3 9 9 H 1.48496 * 109.46816 * 94.98979 * 8 6 4 10 10 H 1.48496 * 109.47295 * 214.99522 * 8 6 4 11 11 H 1.48501 * 109.46689 * 334.99228 * 8 6 4 12 12 C 1.34780 * 120.00164 * 274.33366 * 3 2 1 13 13 O 1.21746 * 120.00079 * 185.34852 * 12 3 2 14 14 C 1.46456 * 119.99553 * 5.34289 * 12 3 2 15 15 S 1.75832 * 125.46463 * 7.52811 * 14 12 3 16 16 C 1.70613 * 91.56763 * 180.02562 * 15 14 12 17 17 C 1.33854 * 110.97125 * 359.74725 * 16 15 14 18 18 C 1.36771 * 125.45957 * 187.54547 * 14 12 3 19 19 S 1.76198 * 123.36040 * 359.96226 * 18 14 12 20 20 N 1.65600 * 107.21792 * 294.99553 * 19 18 14 21 21 O 1.42107 * 106.40190 * 181.45773 * 19 18 14 22 22 O 1.42090 * 106.40449 * 48.54067 * 19 18 14 23 23 H 1.08996 * 109.47416 * 300.00134 * 1 2 3 24 24 H 1.09001 * 109.47078 * 60.00033 * 1 2 3 25 25 H 1.09002 * 109.47361 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47081 * 239.99562 * 2 1 3 27 27 H 1.08997 * 109.46648 * 119.99739 * 2 1 3 28 28 H 0.96996 * 120.00043 * 180.02562 * 7 6 4 29 29 H 1.07997 * 124.51571 * 180.02562 * 16 15 14 30 30 H 1.07993 * 122.44443 * 180.23626 * 17 16 15 31 31 H 0.97005 * 119.99434 * 150.00227 * 20 19 18 32 32 H 0.96996 * 120.00301 * 329.72737 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3309 1.9966 1.1821 5 1 2.8044 2.9673 1.1768 6 6 2.0390 1.3723 2.3892 7 7 1.0602 0.4982 2.4570 8 14 3.0383 1.7757 3.9151 9 1 2.3430 2.8286 4.6979 10 1 3.1848 0.5550 4.7479 11 1 4.3816 2.2641 3.5122 12 6 2.1598 2.0459 -1.1639 13 8 2.6565 3.1574 -1.1736 14 6 1.7161 1.4311 -2.4169 15 16 0.8167 -0.0737 -2.5524 16 6 0.7805 0.0467 -4.2539 17 6 1.4045 1.1557 -4.6691 18 6 1.9352 1.9353 -3.6693 19 16 2.8049 3.4378 -3.9704 20 7 1.9037 4.6648 -3.3188 21 8 2.7917 3.6339 -5.3778 22 8 4.0011 3.3691 -3.2066 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.8563 0.0628 3.2994 29 1 0.3124 -0.6735 -4.9085 30 1 1.4878 1.4171 -5.7136 31 1 2.3417 5.4621 -2.9820 32 1 0.9377 4.5880 -3.2776 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596916627.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:25 Heat of formation + Delta-G solvation = -71.259974 kcal Electronic energy + Delta-G solvation = -21646.861505 eV Core-core repulsion = 18247.660968 eV Total energy + Delta-G solvation = -3399.200538 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 304.038 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.71944 -38.63339 -38.03659 -36.90337 -36.72641 -34.09010 -33.86037 -31.74868 -30.70169 -27.61157 -25.81191 -24.23326 -22.33276 -21.46549 -19.90779 -19.32397 -18.87713 -18.16036 -18.03264 -17.33469 -16.84747 -16.35611 -16.05913 -15.89579 -15.73082 -15.17870 -14.92395 -14.34742 -14.29266 -13.80826 -13.48929 -13.28230 -13.11038 -13.02223 -12.88842 -12.82526 -12.74895 -12.32751 -12.18919 -12.10589 -11.92765 -11.39258 -11.12220 -10.98695 -10.48464 -10.09434 -9.85134 -9.36884 -8.50670 -5.87901 -0.77137 -0.37215 0.57494 1.06989 1.14532 1.38398 1.45626 1.56945 2.16949 2.21826 2.44855 2.77705 2.84584 3.02517 3.63186 3.86000 4.13508 4.32366 4.37518 4.62344 4.66653 4.82957 5.02837 5.08234 5.24850 5.26962 5.35994 5.37132 5.85091 5.91971 6.37484 6.45673 7.03510 7.24018 7.86468 8.45828 Molecular weight = 304.04amu Principal moments of inertia in cm(-1) A = 0.019666 B = 0.006531 C = 0.005151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.434239 B = 4286.112286 C = 5434.334067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.094 3.906 3 N -0.419 5.419 4 C -0.336 4.336 5 H 0.085 0.915 6 C 0.015 3.985 7 N -0.843 5.843 8 Si 0.982 3.018 9 H -0.271 1.271 10 H -0.262 1.262 11 H -0.281 1.281 12 C 0.448 3.552 13 O -0.589 6.589 14 C -0.154 4.154 15 S 0.340 5.660 16 C -0.301 4.301 17 C -0.088 4.088 18 C -0.666 4.666 19 S 2.741 3.259 20 N -1.221 6.221 21 O -0.999 6.999 22 O -0.991 6.991 23 H 0.080 0.920 24 H 0.046 0.954 25 H 0.085 0.915 26 H 0.065 0.935 27 H 0.101 0.899 28 H 0.284 0.716 29 H 0.203 0.797 30 H 0.162 0.838 31 H 0.423 0.577 32 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.105 -4.723 -6.707 10.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.030 4.030 3 N -0.135 5.135 4 C -0.464 4.464 5 H 0.103 0.897 6 C -0.191 4.191 7 N -0.479 5.479 8 Si 0.805 3.195 9 H -0.197 1.197 10 H -0.186 1.186 11 H -0.206 1.206 12 C 0.238 3.762 13 O -0.478 6.478 14 C -0.279 4.279 15 S 0.609 5.391 16 C -0.438 4.438 17 C -0.116 4.116 18 C -0.771 4.771 19 S 2.827 3.173 20 N -0.897 5.897 21 O -0.988 6.988 22 O -0.981 6.981 23 H 0.099 0.901 24 H 0.064 0.936 25 H 0.104 0.896 26 H 0.082 0.918 27 H 0.119 0.881 28 H 0.095 0.905 29 H 0.220 0.780 30 H 0.179 0.821 31 H 0.254 0.746 32 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -5.644 -5.517 -6.100 9.975 hybrid contribution 0.304 1.176 0.096 1.219 sum -5.340 -4.341 -6.004 9.133 Atomic orbital electron populations 1.22244 0.93897 1.03196 1.01861 1.22049 0.96924 0.82308 1.01738 1.43942 1.52681 1.11896 1.04955 1.19772 1.38669 1.05119 0.82889 0.89673 1.25919 0.95854 0.96335 1.01035 1.70100 1.22581 1.26521 1.28742 0.85110 0.78597 0.78589 0.77209 1.19686 1.18628 1.20573 1.17228 0.88502 0.87343 0.83077 1.90707 1.50456 1.20923 1.85688 1.24911 1.04657 1.02347 0.95945 1.83867 1.43538 1.15141 0.96584 1.26478 1.08175 1.03813 1.05367 1.19609 0.98127 0.94103 0.99775 1.30059 1.23429 1.25597 0.97972 0.99990 0.72487 0.72763 0.72017 1.52442 1.20247 1.34542 1.82420 1.93525 1.86937 1.85938 1.32430 1.93554 1.46630 1.86402 1.71467 0.90086 0.93562 0.89581 0.91802 0.88088 0.90537 0.78038 0.82096 0.74557 0.75153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.27 8.34 71.98 0.60 -4.67 16 2 C 0.09 3.73 4.84 86.38 0.42 4.15 16 3 N -0.42 -20.42 2.63 -640.29 -1.68 -22.10 16 4 C -0.34 -17.64 9.43 84.09 0.79 -16.85 16 5 H 0.09 4.89 7.30 -2.91 -0.02 4.87 16 6 C 0.02 0.71 4.89 84.94 0.42 1.13 16 7 N -0.84 -37.29 8.50 21.67 0.18 -37.11 16 8 Si 0.98 38.28 29.63 68.60 2.03 40.31 16 9 H -0.27 -10.40 7.11 99.48 0.71 -9.70 16 10 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 11 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 12 C 0.45 21.99 7.47 86.38 0.65 22.64 16 13 O -0.59 -31.92 12.14 17.17 0.21 -31.71 16 14 C -0.15 -6.13 6.13 24.07 0.15 -5.99 16 15 S 0.34 9.70 14.94 -56.49 -0.84 8.86 16 16 C -0.30 -7.47 10.92 66.82 0.73 -6.74 16 17 C -0.09 -2.65 9.70 21.08 0.20 -2.44 16 18 C -0.67 -24.58 5.94 21.74 0.13 -24.45 16 19 S 2.74 105.69 5.51 -56.49 -0.31 105.37 16 20 N -1.22 -39.17 8.40 37.02 0.31 -38.86 16 21 O -1.00 -38.83 17.41 -128.00 -2.23 -41.06 16 22 O -0.99 -48.02 15.85 -119.11 -1.89 -49.91 16 23 H 0.08 3.29 6.19 -2.39 -0.01 3.27 16 24 H 0.05 1.50 5.46 -15.78 -0.09 1.41 16 25 H 0.09 2.34 8.14 -2.39 -0.02 2.33 16 26 H 0.06 2.26 4.93 -18.95 -0.09 2.17 16 27 H 0.10 4.26 5.94 -2.39 -0.01 4.25 16 28 H 0.28 11.54 8.31 -92.71 -0.77 10.77 16 29 H 0.20 3.29 8.06 -2.91 -0.02 3.27 16 30 H 0.16 4.21 7.78 -2.91 -0.02 4.19 16 31 H 0.42 12.53 8.96 -96.74 -0.87 11.66 16 32 H 0.42 11.32 8.96 -96.75 -0.87 10.45 16 Total: -1.00 -69.35 283.99 -0.82 -70.16 By element: Atomic # 1 Polarization: 29.93 SS G_CDS: -0.68 Total: 29.25 kcal Atomic # 6 Polarization: -37.31 SS G_CDS: 4.08 Total: -33.23 kcal Atomic # 7 Polarization: -96.88 SS G_CDS: -1.19 Total: -98.07 kcal Atomic # 8 Polarization: -118.77 SS G_CDS: -3.91 Total: -122.67 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 2.03 Total: 40.31 kcal Atomic # 16 Polarization: 115.39 SS G_CDS: -1.16 Total: 114.24 kcal Total: -69.35 -0.82 -70.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596916627.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.096 kcal (2) G-P(sol) polarization free energy of solvation -69.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds