Wall clock time and date at job start Tue Mar 31 2020 03:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46428 * 2 1 4 4 C 1.50696 * 109.47331 * 120.00256 * 2 1 3 5 5 H 1.08004 * 119.99479 * 120.00006 * 4 2 1 6 6 C 1.37869 * 120.00196 * 300.00350 * 4 2 1 7 7 N 1.31521 * 120.00242 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 119.99980 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.47364 * 90.00260 * 8 6 4 10 10 H 1.48509 * 109.47087 * 210.00340 * 8 6 4 11 11 H 1.48497 * 109.47079 * 329.99915 * 8 6 4 12 12 N 1.46502 * 109.46968 * 240.00464 * 2 1 3 13 13 C 1.34777 * 119.99683 * 84.99584 * 12 2 1 14 14 O 1.21700 * 120.00323 * 0.02562 * 13 12 2 15 15 C 1.46588 * 119.99633 * 179.97438 * 13 12 2 16 16 S 1.75825 * 125.45820 * 0.02562 * 15 13 12 17 17 C 1.70618 * 91.56421 * 179.97438 * 16 15 13 18 18 C 1.33815 * 110.95153 * 0.02562 * 17 16 15 19 19 C 1.36647 * 125.45354 * 179.97438 * 15 13 12 20 20 S 1.76194 * 123.35661 * 0.03912 * 19 15 13 21 21 N 1.65600 * 107.21668 * 294.99578 * 20 19 15 22 22 O 1.42105 * 106.40436 * 48.53718 * 20 19 15 23 23 O 1.42098 * 106.40652 * 181.45964 * 20 19 15 24 24 H 1.09005 * 109.46848 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46902 * 299.99222 * 1 2 3 26 26 H 1.08997 * 109.47547 * 59.99953 * 1 2 3 27 27 H 0.97001 * 120.00353 * 179.97438 * 7 6 4 28 28 H 0.96996 * 120.00369 * 264.99621 * 12 2 1 29 29 H 1.07997 * 124.52475 * 179.72993 * 17 16 15 30 30 H 1.08005 * 122.45134 * 179.97438 * 18 17 16 31 31 H 0.96996 * 120.00049 * 0.02562 * 21 20 19 32 32 H 0.97004 * 120.00094 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1311 6 6 1.6993 -0.2395 2.4826 7 7 2.1382 -0.8593 3.5565 8 14 0.6259 1.2796 2.6542 9 1 -0.8020 0.8742 2.6994 10 1 0.9773 1.9951 3.9072 11 1 0.8491 2.1772 1.4924 12 7 2.0183 -0.6905 -1.1963 13 6 2.1469 -0.0180 -2.3572 14 8 1.8579 1.1629 -2.4116 15 6 2.6361 -0.7088 -3.5540 16 16 3.0939 -2.4044 -3.6375 17 6 3.4877 -2.2649 -5.2917 18 6 3.2810 -1.0173 -5.7292 19 6 2.8083 -0.1384 -4.7837 20 16 2.4606 1.5552 -5.1233 21 7 0.8296 1.7687 -4.9318 22 8 3.0874 2.3079 -4.0937 23 8 2.7314 1.7514 -6.5043 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.9042 -0.5278 4.4375 28 1 2.2491 -1.6316 -1.1528 29 1 3.8590 -3.0742 -5.9029 30 1 3.4710 -0.7224 -6.7507 31 1 0.2692 1.0196 -4.6757 32 1 0.4348 2.6431 -5.0749 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596997174.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:14 Heat of formation + Delta-G solvation = -65.081430 kcal Electronic energy + Delta-G solvation = -20938.606130 eV Core-core repulsion = 17539.673515 eV Total energy + Delta-G solvation = -3398.932616 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 304.038 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.62958 -37.75792 -36.81111 -35.54014 -35.17212 -32.96484 -32.58029 -30.87428 -29.42159 -25.74200 -25.21879 -22.27376 -20.81902 -20.19030 -19.04401 -18.88315 -17.31041 -17.17162 -16.65597 -16.00257 -15.56742 -15.38945 -15.27154 -14.75843 -14.19670 -14.18859 -13.36125 -13.26131 -12.95225 -12.82186 -12.29386 -12.05357 -11.95898 -11.85396 -11.64677 -11.54325 -11.35356 -10.92894 -10.83625 -10.27226 -10.22471 -9.89145 -9.53316 -9.44897 -9.34280 -9.01834 -8.84651 -8.37606 -6.27612 -4.31622 -0.00496 0.51945 1.24136 1.57713 1.84288 3.18172 3.22695 3.32278 3.33533 3.36410 3.50386 3.76311 4.25896 4.49536 4.90890 4.95220 5.07062 5.21610 5.54735 5.68359 5.86612 6.15620 6.19454 6.24127 6.42082 6.72327 6.96222 7.08913 7.18147 7.37580 7.89215 8.32010 8.47838 8.70365 9.31502 10.84262 Molecular weight = 304.04amu Principal moments of inertia in cm(-1) A = 0.020611 B = 0.005180 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.190868 B = 5403.722910 C = 6389.037360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.236 3.764 3 H 0.058 0.942 4 C -0.539 4.539 5 H 0.081 0.919 6 C 0.081 3.919 7 N -0.889 5.889 8 Si 0.884 3.116 9 H -0.276 1.276 10 H -0.293 1.293 11 H -0.259 1.259 12 N -0.684 5.684 13 C 0.547 3.453 14 O -0.500 6.500 15 C -0.138 4.138 16 S 0.271 5.729 17 C -0.259 4.259 18 C -0.073 4.073 19 C -0.633 4.633 20 S 2.723 3.277 21 N -1.237 6.237 22 O -0.930 6.930 23 O -0.979 6.979 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.038 0.962 27 H 0.269 0.731 28 H 0.394 0.606 29 H 0.176 0.824 30 H 0.160 0.840 31 H 0.413 0.587 32 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.845 -3.571 -17.894 18.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.133 3.867 3 H 0.075 0.925 4 C -0.577 4.577 5 H 0.099 0.901 6 C -0.124 4.124 7 N -0.526 5.526 8 Si 0.713 3.287 9 H -0.202 1.202 10 H -0.220 1.220 11 H -0.184 1.184 12 N -0.332 5.332 13 C 0.329 3.671 14 O -0.377 6.377 15 C -0.263 4.263 16 S 0.538 5.462 17 C -0.397 4.397 18 C -0.102 4.102 19 C -0.735 4.735 20 S 2.806 3.194 21 N -0.911 5.911 22 O -0.919 6.919 23 O -0.968 6.968 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.079 0.921 28 H 0.227 0.773 29 H 0.194 0.806 30 H 0.177 0.823 31 H 0.239 0.761 32 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -1.158 -3.371 -16.912 17.284 hybrid contribution -0.923 0.482 -0.593 1.198 sum -2.081 -2.889 -17.505 17.864 Atomic orbital electron populations 1.22471 0.98834 1.01076 0.99721 1.19278 0.90411 0.95039 0.81975 0.92453 1.20970 1.33712 1.14646 0.88404 0.90107 1.24808 0.95432 0.96686 0.95430 1.69859 1.44576 1.40034 0.98105 0.86892 0.80408 0.83573 0.77778 1.20240 1.22004 1.18400 1.46116 1.64132 1.13534 1.09462 1.17201 0.80415 0.87002 0.82458 1.90977 1.49584 1.13219 1.83960 1.25188 1.04579 0.99199 0.97300 1.83226 1.54371 1.04316 1.04289 1.25451 1.10657 1.02426 1.01150 1.19578 0.98922 0.91193 1.00512 1.30412 1.17300 1.27090 0.98690 1.01118 0.72773 0.72109 0.73376 1.52727 1.28249 1.20292 1.89852 1.93675 1.74023 1.66743 1.57454 1.93567 1.84124 1.84312 1.34803 0.92660 0.93061 0.94255 0.92147 0.77258 0.80626 0.82276 0.76053 0.75233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 8.96 37.16 0.33 -3.06 16 2 C 0.24 5.38 2.15 -69.08 -0.15 5.23 16 3 H 0.06 1.45 6.63 -51.93 -0.34 1.11 16 4 C -0.54 -14.09 9.31 -34.45 -0.32 -14.41 16 5 H 0.08 2.21 7.98 -52.48 -0.42 1.79 16 6 C 0.08 2.20 5.45 -17.82 -0.10 2.11 16 7 N -0.89 -25.71 13.96 55.43 0.77 -24.93 16 8 Si 0.88 21.13 24.37 -169.99 -4.14 16.99 16 9 H -0.28 -6.32 6.87 56.52 0.39 -5.93 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.26 -6.16 6.53 56.52 0.37 -5.79 16 12 N -0.68 -13.00 5.06 -56.27 -0.29 -13.29 16 13 C 0.55 10.02 7.72 -12.89 -0.10 9.92 16 14 O -0.50 -10.41 12.13 -18.23 -0.22 -10.63 16 15 C -0.14 -2.02 6.45 -36.79 -0.24 -2.26 16 16 S 0.27 2.88 22.16 -107.50 -2.38 0.50 16 17 C -0.26 -2.43 10.92 29.18 0.32 -2.12 16 18 C -0.07 -0.82 9.70 -41.41 -0.40 -1.23 16 19 C -0.63 -8.72 5.91 -40.43 -0.24 -8.96 16 20 S 2.72 40.19 5.53 -107.50 -0.59 39.60 16 21 N -1.24 -14.30 8.67 60.35 0.52 -13.78 16 22 O -0.93 -18.05 15.58 -66.74 -1.04 -19.09 16 23 O -0.98 -15.35 17.41 -57.17 -1.00 -16.35 16 24 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 25 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.39 6.53 7.65 -40.82 -0.31 6.22 16 29 H 0.18 1.07 8.06 -52.49 -0.42 0.65 16 30 H 0.16 1.53 7.78 -52.48 -0.41 1.12 16 31 H 0.41 4.10 8.92 -34.47 -0.31 3.79 16 32 H 0.42 3.97 8.96 -34.47 -0.31 3.66 16 LS Contribution 295.80 15.07 4.46 4.46 Total: -1.00 -34.91 295.80 -7.52 -42.42 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -2.72 Total: 8.87 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -0.89 Total: -14.77 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: 1.01 Total: -52.00 kcal Atomic # 8 Polarization: -43.81 SS G_CDS: -2.26 Total: -46.06 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.14 Total: 16.99 kcal Atomic # 16 Polarization: 43.08 SS G_CDS: -2.98 Total: 40.10 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -34.91 -7.52 -42.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596997174.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.658 kcal (2) G-P(sol) polarization free energy of solvation -34.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds