Wall clock time and date at job start Tue Mar 31 2020 03:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46428 * 2 1 4 4 C 1.50696 * 109.47331 * 120.00256 * 2 1 3 5 5 H 1.08004 * 119.99479 * 120.00006 * 4 2 1 6 6 C 1.37869 * 120.00196 * 300.00350 * 4 2 1 7 7 N 1.31521 * 120.00242 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 119.99980 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.47364 * 90.00260 * 8 6 4 10 10 H 1.48509 * 109.47087 * 210.00340 * 8 6 4 11 11 H 1.48497 * 109.47079 * 329.99915 * 8 6 4 12 12 N 1.46502 * 109.46968 * 240.00464 * 2 1 3 13 13 C 1.34777 * 119.99683 * 84.99584 * 12 2 1 14 14 O 1.21700 * 120.00323 * 0.02562 * 13 12 2 15 15 C 1.46588 * 119.99633 * 179.97438 * 13 12 2 16 16 S 1.75825 * 125.45820 * 0.02562 * 15 13 12 17 17 C 1.70618 * 91.56421 * 179.97438 * 16 15 13 18 18 C 1.33815 * 110.95153 * 0.02562 * 17 16 15 19 19 C 1.36647 * 125.45354 * 179.97438 * 15 13 12 20 20 S 1.76194 * 123.35661 * 0.03912 * 19 15 13 21 21 N 1.65600 * 107.21668 * 294.99578 * 20 19 15 22 22 O 1.42105 * 106.40436 * 48.53718 * 20 19 15 23 23 O 1.42098 * 106.40652 * 181.45964 * 20 19 15 24 24 H 1.09005 * 109.46848 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46902 * 299.99222 * 1 2 3 26 26 H 1.08997 * 109.47547 * 59.99953 * 1 2 3 27 27 H 0.97001 * 120.00353 * 179.97438 * 7 6 4 28 28 H 0.96996 * 120.00369 * 264.99621 * 12 2 1 29 29 H 1.07997 * 124.52475 * 179.72993 * 17 16 15 30 30 H 1.08005 * 122.45134 * 179.97438 * 18 17 16 31 31 H 0.96996 * 120.00049 * 0.02562 * 21 20 19 32 32 H 0.97004 * 120.00094 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1311 6 6 1.6993 -0.2395 2.4826 7 7 2.1382 -0.8593 3.5565 8 14 0.6259 1.2796 2.6542 9 1 -0.8020 0.8742 2.6994 10 1 0.9773 1.9951 3.9072 11 1 0.8491 2.1772 1.4924 12 7 2.0183 -0.6905 -1.1963 13 6 2.1469 -0.0180 -2.3572 14 8 1.8579 1.1629 -2.4116 15 6 2.6361 -0.7088 -3.5540 16 16 3.0939 -2.4044 -3.6375 17 6 3.4877 -2.2649 -5.2917 18 6 3.2810 -1.0173 -5.7292 19 6 2.8083 -0.1384 -4.7837 20 16 2.4606 1.5552 -5.1233 21 7 0.8296 1.7687 -4.9318 22 8 3.0874 2.3079 -4.0937 23 8 2.7314 1.7514 -6.5043 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.9042 -0.5278 4.4375 28 1 2.2491 -1.6316 -1.1528 29 1 3.8590 -3.0742 -5.9029 30 1 3.4710 -0.7224 -6.7507 31 1 0.2692 1.0196 -4.6757 32 1 0.4348 2.6431 -5.0749 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596997174.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:14 Heat of formation + Delta-G solvation = -95.148187 kcal Electronic energy + Delta-G solvation = -20939.909923 eV Core-core repulsion = 17539.673515 eV Total energy + Delta-G solvation = -3400.236408 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 304.038 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.00610 -38.79980 -38.07005 -36.83426 -36.81109 -34.49163 -33.95835 -32.38482 -30.66664 -27.25686 -26.72380 -23.70388 -21.84852 -21.77119 -20.39682 -20.01419 -18.56672 -18.34732 -18.18672 -17.35691 -17.02699 -16.73917 -16.44622 -16.14644 -15.71925 -15.13059 -14.95901 -14.80641 -14.28065 -14.11421 -13.84164 -13.58027 -13.21968 -13.20560 -13.09168 -12.88755 -12.77479 -12.57319 -12.13448 -11.92239 -11.63081 -11.29253 -11.23906 -11.07983 -10.87175 -10.38994 -10.08925 -9.81689 -8.38189 -6.44767 -1.04392 -0.57783 0.29661 0.70204 0.95159 1.28266 1.38365 1.46963 1.86822 2.10338 2.26879 2.29163 2.65951 2.98505 3.45170 3.73844 4.11715 4.20256 4.46113 4.56680 4.65737 4.68667 4.81920 5.00421 5.02215 5.26628 5.30141 5.39783 5.51670 6.06972 6.36144 6.52127 6.63411 7.04901 7.24720 8.76730 Molecular weight = 304.04amu Principal moments of inertia in cm(-1) A = 0.020611 B = 0.005180 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.190868 B = 5403.722910 C = 6389.037360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.240 3.760 3 H 0.029 0.971 4 C -0.536 4.536 5 H 0.059 0.941 6 C 0.032 3.968 7 N -0.932 5.932 8 Si 0.936 3.064 9 H -0.255 1.255 10 H -0.295 1.295 11 H -0.261 1.261 12 N -0.687 5.687 13 C 0.549 3.451 14 O -0.532 6.532 15 C -0.188 4.188 16 S 0.329 5.671 17 C -0.231 4.231 18 C -0.092 4.092 19 C -0.625 4.625 20 S 2.733 3.267 21 N -1.227 6.227 22 O -0.984 6.984 23 O -0.992 6.992 24 H 0.069 0.931 25 H 0.042 0.958 26 H 0.055 0.945 27 H 0.271 0.729 28 H 0.404 0.596 29 H 0.219 0.781 30 H 0.177 0.823 31 H 0.422 0.578 32 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.474 -5.079 -19.962 20.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.136 3.864 3 H 0.047 0.953 4 C -0.574 4.574 5 H 0.077 0.923 6 C -0.168 4.168 7 N -0.570 5.570 8 Si 0.763 3.237 9 H -0.181 1.181 10 H -0.223 1.223 11 H -0.186 1.186 12 N -0.337 5.337 13 C 0.333 3.667 14 O -0.411 6.411 15 C -0.312 4.312 16 S 0.598 5.402 17 C -0.369 4.369 18 C -0.119 4.119 19 C -0.731 4.731 20 S 2.820 3.180 21 N -0.905 5.905 22 O -0.973 6.973 23 O -0.982 6.982 24 H 0.088 0.912 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.240 0.760 29 H 0.236 0.764 30 H 0.194 0.806 31 H 0.251 0.749 32 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -1.804 -4.883 -19.011 19.711 hybrid contribution -0.629 0.780 -0.069 1.004 sum -2.433 -4.103 -19.080 19.667 Atomic orbital electron populations 1.22359 0.96906 1.02173 1.00090 1.18922 0.91863 0.93374 0.82234 0.95267 1.21211 1.32631 1.13747 0.89809 0.92321 1.25517 0.96800 0.99223 0.95296 1.69967 1.46510 1.41878 0.98678 0.86054 0.79974 0.80395 0.77276 1.18081 1.22289 1.18553 1.45862 1.64920 1.13984 1.08897 1.17557 0.79409 0.86709 0.83014 1.90950 1.50744 1.14684 1.84717 1.24727 1.08458 1.01987 0.96009 1.83092 1.51953 1.00441 1.04763 1.26012 1.07434 1.02726 1.00762 1.19785 0.99650 0.91526 1.00939 1.30197 1.17441 1.26347 0.99107 1.00373 0.73059 0.72256 0.72361 1.52434 1.27151 1.21290 1.89614 1.93622 1.75676 1.69008 1.59017 1.93545 1.84678 1.84933 1.35031 0.91209 0.93910 0.92556 0.92016 0.76005 0.76389 0.80604 0.74944 0.74116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.34 8.96 71.98 0.65 -5.70 16 2 C 0.24 10.97 2.15 44.24 0.10 11.07 16 3 H 0.03 1.51 6.63 -2.39 -0.02 1.50 16 4 C -0.54 -28.34 9.31 25.60 0.24 -28.10 16 5 H 0.06 3.28 7.98 -2.91 -0.02 3.26 16 6 C 0.03 1.75 5.45 84.65 0.46 2.21 16 7 N -0.93 -54.76 13.96 21.45 0.30 -54.46 16 8 Si 0.94 43.64 24.37 68.60 1.67 45.31 16 9 H -0.26 -11.00 6.87 99.48 0.68 -10.32 16 10 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 11 H -0.26 -12.13 6.53 99.48 0.65 -11.48 16 12 N -0.69 -25.89 5.06 -450.16 -2.28 -28.17 16 13 C 0.55 19.92 7.72 86.42 0.67 20.59 16 14 O -0.53 -22.36 12.13 18.04 0.22 -22.15 16 15 C -0.19 -5.22 6.45 24.08 0.16 -5.06 16 16 S 0.33 5.92 22.16 -56.49 -1.25 4.67 16 17 C -0.23 -3.25 10.92 66.81 0.73 -2.52 16 18 C -0.09 -1.76 9.70 21.08 0.20 -1.56 16 19 C -0.63 -16.22 5.91 21.72 0.13 -16.09 16 20 S 2.73 80.04 5.53 -56.49 -0.31 79.73 16 21 N -1.23 -27.67 8.67 37.02 0.32 -27.35 16 22 O -0.98 -39.22 15.58 -118.85 -1.85 -41.08 16 23 O -0.99 -30.44 17.41 -128.00 -2.23 -32.67 16 24 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 25 H 0.04 1.79 3.27 -2.39 -0.01 1.78 16 26 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 28 H 0.40 13.13 7.65 -92.71 -0.71 12.42 16 29 H 0.22 1.22 8.06 -2.91 -0.02 1.20 16 30 H 0.18 2.78 7.78 -2.91 -0.02 2.76 16 31 H 0.42 7.97 8.92 -96.75 -0.86 7.10 16 32 H 0.43 7.92 8.96 -96.74 -0.87 7.05 16 Total: -1.00 -76.97 295.80 -3.39 -80.36 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: -1.30 Total: 20.96 kcal Atomic # 6 Polarization: -28.49 SS G_CDS: 3.33 Total: -25.16 kcal Atomic # 7 Polarization: -108.32 SS G_CDS: -1.66 Total: -109.97 kcal Atomic # 8 Polarization: -92.03 SS G_CDS: -3.86 Total: -95.89 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.67 Total: 45.31 kcal Atomic # 16 Polarization: 85.96 SS G_CDS: -1.56 Total: 84.40 kcal Total: -76.97 -3.39 -80.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596997174.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.792 kcal (2) G-P(sol) polarization free energy of solvation -76.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds