Wall clock time and date at job start Tue Mar 31 2020 03:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48499 * 109.47381 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47001 * 300.00051 * 3 2 1 6 6 H 1.48497 * 109.47392 * 59.99750 * 3 2 1 7 7 C 1.37883 * 119.99532 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99815 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00023 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99870 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47066 * 180.02562 * 11 10 9 13 13 C 1.38272 * 119.98665 * 90.00022 * 12 11 10 14 14 C 1.38186 * 120.01466 * 179.97438 * 13 12 11 15 15 C 1.38374 * 119.98605 * 0.02562 * 14 13 12 16 16 Cl 1.73603 * 120.01541 * 179.97438 * 15 14 13 17 17 C 1.38331 * 119.97597 * 359.97438 * 15 14 13 18 18 S 1.76197 * 120.01058 * 180.02562 * 17 15 14 19 19 N 1.65611 * 107.21834 * 295.00410 * 18 17 15 20 20 O 1.42095 * 106.40199 * 48.53928 * 18 17 15 21 21 O 1.42095 * 106.40469 * 181.46353 * 18 17 15 22 22 C 1.38220 * 119.98994 * 269.72881 * 12 11 10 23 23 H 0.97001 * 119.99132 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46763 * 60.00533 * 9 7 2 25 25 H 1.08995 * 109.47483 * 300.00190 * 9 7 2 26 26 H 1.00901 * 111.00067 * 303.95401 * 10 9 7 27 27 H 1.09001 * 109.46798 * 300.00327 * 11 10 9 28 28 H 1.08998 * 109.46961 * 60.00043 * 11 10 9 29 29 H 1.07994 * 119.99063 * 0.02562 * 13 12 11 30 30 H 1.07993 * 120.00892 * 180.02562 * 14 13 12 31 31 H 0.96997 * 119.99603 * 359.97438 * 19 18 17 32 32 H 0.96998 * 119.99664 * 179.97438 * 19 18 17 33 33 H 1.08003 * 119.98920 * 359.97262 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8906 2.3964 1.2124 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5050 -4.9071 -0.0011 12 6 2.5145 -6.0261 -0.0005 13 6 2.9765 -6.5393 1.1974 14 6 3.9017 -7.5657 1.1987 15 6 4.3662 -8.0795 0.0008 16 17 5.5291 -9.3686 0.0015 17 6 3.9037 -7.5657 -1.1973 18 16 4.4940 -8.2198 -2.7232 19 7 6.1107 -7.8721 -2.8128 20 8 4.3929 -9.6334 -2.6197 21 8 3.8644 -7.4688 -3.7521 22 6 2.9739 -6.5428 -1.1973 23 1 -0.4849 0.8401 0.0004 24 1 0.6240 -2.5566 -0.8904 25 1 0.6246 -2.5571 0.8896 26 1 2.8403 -3.5488 -0.7819 27 1 0.8798 -4.9817 0.8886 28 1 0.8805 -4.9812 -0.8914 29 1 2.6135 -6.1384 2.1322 30 1 4.2622 -7.9668 2.1344 31 1 6.5435 -7.3888 -2.0917 32 1 6.6247 -8.1517 -3.5864 33 1 2.6090 -6.1447 -2.1327 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877482831.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:23 Heat of formation + Delta-G solvation = -56.998268 kcal Electronic energy + Delta-G solvation = -19871.512390 eV Core-core repulsion = 16470.886580 eV Total energy + Delta-G solvation = -3400.625810 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 304.043 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.75609 -37.41714 -36.91159 -35.97393 -35.43344 -33.41747 -32.80177 -31.67731 -31.01719 -27.17138 -24.57228 -23.76096 -21.95768 -21.38968 -19.66336 -18.42551 -17.58884 -17.02084 -16.57458 -16.43079 -15.76243 -15.36643 -14.83926 -14.51089 -14.45651 -14.06737 -13.74105 -13.33236 -12.79772 -12.41337 -12.33017 -12.20679 -12.15074 -11.86891 -11.76343 -11.71187 -11.41776 -11.24932 -10.83747 -10.78091 -10.69211 -10.65467 -10.05345 -9.69323 -9.29199 -8.93201 -8.55946 -7.49518 -6.10746 -4.13191 0.13826 0.46423 0.89300 1.59200 2.84752 3.12263 3.26806 3.34359 3.38968 3.44888 4.17651 4.37426 4.57389 4.77293 4.88413 5.06250 5.13922 5.25629 5.33202 5.46986 5.60108 5.74973 5.76306 5.84187 5.99225 6.34855 6.45318 6.78031 7.08656 7.28757 7.67365 8.00981 8.20800 8.45073 8.95502 9.52204 11.00347 Molecular weight = 304.04amu Principal moments of inertia in cm(-1) A = 0.022712 B = 0.003267 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.547090 B = 8569.715408 C = 9012.895619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.516 4.516 8 H 0.063 0.937 9 C 0.192 3.808 10 N -0.684 5.684 11 C 0.089 3.911 12 C -0.078 4.078 13 C -0.029 4.029 14 C -0.127 4.127 15 C 0.039 3.961 16 Cl -0.048 7.048 17 C -0.670 4.670 18 S 2.702 3.298 19 N -1.247 6.247 20 O -0.951 6.951 21 O -0.960 6.960 22 C -0.004 4.004 23 H 0.262 0.738 24 H -0.010 1.010 25 H 0.030 0.970 26 H 0.331 0.669 27 H 0.081 0.919 28 H 0.038 0.962 29 H 0.145 0.855 30 H 0.143 0.857 31 H 0.417 0.583 32 H 0.420 0.580 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.139 -18.433 -0.841 21.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.082 0.918 9 C 0.066 3.934 10 N -0.314 5.314 11 C -0.041 4.041 12 C -0.080 4.080 13 C -0.048 4.048 14 C -0.147 4.147 15 C 0.011 3.989 16 Cl -0.019 7.019 17 C -0.757 4.757 18 S 2.789 3.211 19 N -0.922 5.922 20 O -0.941 6.941 21 O -0.950 6.950 22 C -0.024 4.024 23 H 0.071 0.929 24 H 0.008 0.992 25 H 0.048 0.952 26 H 0.148 0.852 27 H 0.099 0.901 28 H 0.056 0.944 29 H 0.163 0.837 30 H 0.160 0.840 31 H 0.244 0.756 32 H 0.251 0.749 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 10.441 -18.903 -0.770 21.609 hybrid contribution 0.591 1.285 -0.127 1.420 sum 11.031 -17.618 -0.898 20.806 Atomic orbital electron populations 1.69968 1.06105 1.26835 1.50690 1.24991 0.94892 0.99446 0.95199 0.86408 0.80027 0.83202 0.77566 1.19645 1.21021 1.20960 1.21182 0.93569 0.90075 1.50650 0.91849 1.19619 0.90554 0.87120 0.96100 1.60818 1.21137 1.00362 1.49131 1.20975 0.93025 0.88403 1.01675 1.20354 0.98143 0.96951 0.92501 1.21457 0.92308 0.91969 0.99049 1.21188 0.98732 0.97940 0.96809 1.20453 0.93225 0.90975 0.94255 1.98438 1.56666 1.48099 1.98685 1.30360 1.14436 1.13071 1.17852 1.01626 0.72583 0.73989 0.72922 1.52959 1.30037 1.76278 1.32929 1.93640 1.85406 1.29129 1.85890 1.93616 1.74663 1.72566 1.54121 1.20969 0.91043 0.90426 0.99954 0.92861 0.99211 0.95179 0.85221 0.90091 0.94434 0.83714 0.83950 0.75607 0.74906 0.82966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.19 13.29 55.43 0.74 -25.45 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.17 9.32 -34.44 -0.32 -14.49 16 8 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.19 4.80 5.44 -4.98 -0.03 4.78 16 10 N -0.68 -13.58 6.48 -116.34 -0.75 -14.34 16 11 C 0.09 1.41 5.81 -4.97 -0.03 1.38 16 12 C -0.08 -1.04 5.39 -104.62 -0.56 -1.61 16 13 C -0.03 -0.33 9.70 -39.59 -0.38 -0.72 16 14 C -0.13 -1.32 9.83 -39.55 -0.39 -1.70 16 15 C 0.04 0.44 6.30 -39.50 -0.25 0.19 16 16 Cl -0.05 -0.49 26.48 -51.86 -1.37 -1.86 16 17 C -0.67 -7.92 5.88 -39.55 -0.23 -8.15 16 18 S 2.70 30.39 5.61 -107.50 -0.60 29.79 16 19 N -1.25 -9.12 9.34 60.35 0.56 -8.55 16 20 O -0.95 -12.85 16.50 -57.17 -0.94 -13.79 16 21 O -0.96 -13.67 16.97 -57.17 -0.97 -14.64 16 22 C 0.00 -0.05 9.20 -39.59 -0.36 -0.42 16 23 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 24 H -0.01 -0.26 8.14 -51.93 -0.42 -0.69 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.33 6.36 8.71 -39.29 -0.34 6.02 16 27 H 0.08 1.25 8.08 -51.93 -0.42 0.83 16 28 H 0.04 0.59 8.08 -51.93 -0.42 0.17 16 29 H 0.15 1.46 8.06 -52.49 -0.42 1.04 16 30 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 31 H 0.42 2.36 8.92 -34.47 -0.31 2.06 16 32 H 0.42 2.16 8.96 -34.48 -0.31 1.85 16 33 H 0.15 1.92 7.34 -52.48 -0.38 1.54 16 LS Contribution 316.48 15.07 4.77 4.77 Total: -1.00 -33.77 316.48 -9.67 -43.44 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -3.42 Total: 3.72 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: -2.66 Total: -19.27 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: 0.55 Total: -48.34 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -1.91 Total: -28.44 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 30.39 SS G_CDS: -0.60 Total: 29.79 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.37 Total: -1.86 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.77 -9.67 -43.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877482831.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.560 kcal (2) G-P(sol) polarization free energy of solvation -33.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds