Wall clock time and date at job start Tue Mar 31 2020 03:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48499 * 109.47381 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47001 * 300.00051 * 3 2 1 6 6 H 1.48497 * 109.47392 * 59.99750 * 3 2 1 7 7 C 1.37883 * 119.99532 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99815 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00023 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99870 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47066 * 180.02562 * 11 10 9 13 13 C 1.38272 * 119.98665 * 90.00022 * 12 11 10 14 14 C 1.38186 * 120.01466 * 179.97438 * 13 12 11 15 15 C 1.38374 * 119.98605 * 0.02562 * 14 13 12 16 16 Cl 1.73603 * 120.01541 * 179.97438 * 15 14 13 17 17 C 1.38331 * 119.97597 * 359.97438 * 15 14 13 18 18 S 1.76197 * 120.01058 * 180.02562 * 17 15 14 19 19 N 1.65611 * 107.21834 * 295.00410 * 18 17 15 20 20 O 1.42095 * 106.40199 * 48.53928 * 18 17 15 21 21 O 1.42095 * 106.40469 * 181.46353 * 18 17 15 22 22 C 1.38220 * 119.98994 * 269.72881 * 12 11 10 23 23 H 0.97001 * 119.99132 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46763 * 60.00533 * 9 7 2 25 25 H 1.08995 * 109.47483 * 300.00190 * 9 7 2 26 26 H 1.00901 * 111.00067 * 303.95401 * 10 9 7 27 27 H 1.09001 * 109.46798 * 300.00327 * 11 10 9 28 28 H 1.08998 * 109.46961 * 60.00043 * 11 10 9 29 29 H 1.07994 * 119.99063 * 0.02562 * 13 12 11 30 30 H 1.07993 * 120.00892 * 180.02562 * 14 13 12 31 31 H 0.96997 * 119.99603 * 359.97438 * 19 18 17 32 32 H 0.96998 * 119.99664 * 179.97438 * 19 18 17 33 33 H 1.08003 * 119.98920 * 359.97262 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8906 2.3964 1.2124 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5050 -4.9071 -0.0011 12 6 2.5145 -6.0261 -0.0005 13 6 2.9765 -6.5393 1.1974 14 6 3.9017 -7.5657 1.1987 15 6 4.3662 -8.0795 0.0008 16 17 5.5291 -9.3686 0.0015 17 6 3.9037 -7.5657 -1.1973 18 16 4.4940 -8.2198 -2.7232 19 7 6.1107 -7.8721 -2.8128 20 8 4.3929 -9.6334 -2.6197 21 8 3.8644 -7.4688 -3.7521 22 6 2.9739 -6.5428 -1.1973 23 1 -0.4849 0.8401 0.0004 24 1 0.6240 -2.5566 -0.8904 25 1 0.6246 -2.5571 0.8896 26 1 2.8403 -3.5488 -0.7819 27 1 0.8798 -4.9817 0.8886 28 1 0.8805 -4.9812 -0.8914 29 1 2.6135 -6.1384 2.1322 30 1 4.2622 -7.9668 2.1344 31 1 6.5435 -7.3888 -2.0917 32 1 6.6247 -8.1517 -3.5864 33 1 2.6090 -6.1447 -2.1327 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877482831.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:22 Heat of formation + Delta-G solvation = -84.162206 kcal Electronic energy + Delta-G solvation = -19872.690307 eV Core-core repulsion = 16470.886580 eV Total energy + Delta-G solvation = -3401.803727 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 304.043 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.72133 -38.39770 -37.87169 -36.99528 -36.94469 -34.70586 -34.11597 -32.62852 -32.33726 -28.91279 -26.09250 -24.68783 -23.59303 -22.71596 -20.56147 -19.39386 -18.52398 -18.40561 -17.85990 -17.46116 -16.86058 -16.56837 -16.40402 -15.88740 -15.56614 -15.30127 -14.92258 -14.64563 -14.30613 -13.63803 -13.41397 -13.28707 -13.22603 -13.19245 -13.12399 -12.94831 -12.71697 -12.55951 -12.47465 -12.34496 -11.99951 -11.71505 -11.37324 -11.30344 -10.67215 -10.60113 -9.93309 -9.18584 -8.22863 -6.33565 -0.75723 -0.47710 -0.04655 0.71622 1.42461 1.43047 1.56518 1.99597 2.18664 2.40949 2.56455 3.11401 3.23269 3.58270 3.72488 3.82378 3.99294 4.12242 4.20564 4.44461 4.63623 4.66949 4.73870 4.91020 5.06675 5.22205 5.25914 5.33141 5.50611 5.60530 5.99866 6.29070 6.37091 6.64760 6.86493 7.37409 8.88785 Molecular weight = 304.04amu Principal moments of inertia in cm(-1) A = 0.022712 B = 0.003267 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.547090 B = 8569.715408 C = 9012.895619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.972 3.028 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.535 4.535 8 H 0.065 0.935 9 C 0.205 3.795 10 N -0.680 5.680 11 C 0.091 3.909 12 C -0.092 4.092 13 C -0.027 4.027 14 C -0.119 4.119 15 C 0.039 3.961 16 Cl -0.036 7.036 17 C -0.672 4.672 18 S 2.720 3.280 19 N -1.231 6.231 20 O -0.974 6.974 21 O -0.994 6.994 22 C -0.014 4.014 23 H 0.265 0.735 24 H -0.036 1.036 25 H 0.007 0.993 26 H 0.335 0.665 27 H 0.084 0.916 28 H 0.034 0.966 29 H 0.160 0.840 30 H 0.174 0.826 31 H 0.427 0.573 32 H 0.432 0.568 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.108 -18.869 -0.027 22.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.796 3.204 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.573 4.573 8 H 0.083 0.917 9 C 0.078 3.922 10 N -0.310 5.310 11 C -0.038 4.038 12 C -0.093 4.093 13 C -0.045 4.045 14 C -0.138 4.138 15 C 0.010 3.990 16 Cl -0.006 7.006 17 C -0.759 4.759 18 S 2.807 3.193 19 N -0.912 5.912 20 O -0.963 6.963 21 O -0.983 6.983 22 C -0.034 4.034 23 H 0.074 0.926 24 H -0.018 1.018 25 H 0.026 0.974 26 H 0.152 0.848 27 H 0.103 0.897 28 H 0.052 0.948 29 H 0.178 0.822 30 H 0.191 0.809 31 H 0.257 0.743 32 H 0.266 0.734 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 12.437 -19.366 0.036 23.016 hybrid contribution 0.024 1.306 -0.361 1.355 sum 12.461 -18.061 -0.325 21.944 Atomic orbital electron populations 1.70089 1.07768 1.27951 1.51554 1.25921 0.95753 1.03315 0.94616 0.85299 0.78982 0.78415 0.77680 1.18614 1.20523 1.20395 1.21559 0.93858 0.91343 1.50527 0.91666 1.19267 0.90640 0.88585 0.93728 1.60663 1.20272 1.00748 1.49318 1.20953 0.93728 0.87402 1.01712 1.20092 0.98658 0.96936 0.93645 1.21654 0.92092 0.91960 0.98827 1.21498 0.97614 0.96939 0.97756 1.20625 0.93125 0.90959 0.94283 1.98447 1.56081 1.47451 1.98662 1.30299 1.14424 1.12848 1.18341 1.00858 0.73124 0.73139 0.72173 1.52586 1.28540 1.76176 1.33897 1.93613 1.86141 1.30476 1.86100 1.93580 1.76046 1.73086 1.55576 1.20944 0.91625 0.91093 0.99713 0.92621 1.01824 0.97448 0.84793 0.89722 0.94761 0.82200 0.80885 0.74319 0.73392 0.83492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.29 13.29 21.45 0.28 -55.01 16 2 C 0.00 0.13 5.46 84.66 0.46 0.59 16 3 Si 0.97 43.34 29.54 68.60 2.03 45.37 16 4 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 5 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.53 -29.60 9.32 25.60 0.24 -29.36 16 8 H 0.07 3.51 7.81 -2.91 -0.02 3.48 16 9 C 0.21 10.55 5.44 85.56 0.47 11.01 16 10 N -0.68 -27.25 6.48 -521.98 -3.38 -30.64 16 11 C 0.09 2.92 5.81 85.55 0.50 3.42 16 12 C -0.09 -2.39 5.39 -19.86 -0.11 -2.50 16 13 C -0.03 -0.56 9.70 22.27 0.22 -0.34 16 14 C -0.12 -2.12 9.83 22.29 0.22 -1.90 16 15 C 0.04 0.77 6.30 22.32 0.14 0.91 16 16 Cl -0.04 -0.64 26.48 -2.72 -0.07 -0.71 16 17 C -0.67 -15.09 5.88 22.29 0.13 -14.96 16 18 S 2.72 58.87 5.61 -56.49 -0.32 58.55 16 19 N -1.23 -15.92 9.34 37.02 0.35 -15.58 16 20 O -0.97 -25.32 16.50 -128.00 -2.11 -27.43 16 21 O -0.99 -28.23 16.97 -128.00 -2.17 -30.41 16 22 C -0.01 -0.35 9.20 22.26 0.20 -0.15 16 23 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 24 H -0.04 -1.99 8.14 -2.39 -0.02 -2.01 16 25 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.34 12.97 8.71 -89.69 -0.78 12.19 16 27 H 0.08 2.62 8.08 -2.39 -0.02 2.60 16 28 H 0.03 1.12 8.08 -2.39 -0.02 1.10 16 29 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 30 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 31 H 0.43 3.93 8.92 -96.75 -0.86 3.07 16 32 H 0.43 3.66 8.96 -96.74 -0.87 2.79 16 33 H 0.15 3.81 7.34 -2.91 -0.02 3.79 16 Total: -1.00 -72.08 316.48 -4.26 -76.34 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -1.33 Total: 12.80 kcal Atomic # 6 Polarization: -35.75 SS G_CDS: 2.47 Total: -33.28 kcal Atomic # 7 Polarization: -98.47 SS G_CDS: -2.75 Total: -101.22 kcal Atomic # 8 Polarization: -53.56 SS G_CDS: -4.28 Total: -57.84 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: 58.87 SS G_CDS: -0.32 Total: 58.55 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -0.07 Total: -0.71 kcal Total: -72.08 -4.26 -76.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877482831.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.825 kcal (2) G-P(sol) polarization free energy of solvation -72.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds