Wall clock time and date at job start Tue Mar 31 2020 03:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50703 * 115.54856 * 2 1 4 4 O 1.21278 * 119.99985 * 214.33427 * 3 2 1 5 5 N 1.34779 * 119.99944 * 34.33138 * 3 2 1 6 6 C 1.46499 * 119.99872 * 180.02562 * 5 3 2 7 7 C 1.50701 * 109.46992 * 179.97438 * 6 5 3 8 8 O 1.21294 * 119.99849 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 5 10 10 C 1.37101 * 119.99707 * 180.02562 * 9 7 6 11 11 H 1.08002 * 119.99704 * 359.97438 * 10 9 7 12 12 C 1.38941 * 119.99927 * 180.02562 * 10 9 7 13 13 N 1.31417 * 120.00180 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00273 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.46986 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47457 * 119.99901 * 14 12 10 17 17 H 1.48501 * 109.47104 * 239.99973 * 14 12 10 18 18 C 1.53001 * 117.51867 * 145.70083 * 2 1 3 19 19 C 1.52997 * 117.49944 * 214.33267 * 2 1 3 20 20 H 1.08998 * 117.49940 * 359.97438 * 19 2 1 21 21 Br 1.96600 * 117.50112 * 144.99704 * 19 2 1 22 22 H 1.08996 * 109.47765 * 85.58731 * 1 2 3 23 23 H 1.09004 * 109.46991 * 205.58457 * 1 2 3 24 24 H 1.08999 * 109.47481 * 325.57896 * 1 2 3 25 25 H 0.97000 * 119.99708 * 359.97438 * 5 3 2 26 26 H 1.09002 * 109.47391 * 59.99686 * 6 5 3 27 27 H 1.09001 * 109.46813 * 299.99742 * 6 5 3 28 28 H 0.96995 * 120.00011 * 0.02562 * 9 7 6 29 29 H 0.97000 * 119.99884 * 180.02562 * 13 12 10 30 30 H 1.09000 * 117.49429 * 214.97322 * 18 2 1 31 31 H 1.08999 * 117.50024 * 359.97438 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1799 1.3597 0.0000 4 8 3.2239 1.5327 -0.5924 5 7 1.6009 2.3834 0.6583 6 6 2.2324 3.7052 0.6578 7 6 1.3902 4.6646 1.4587 8 8 0.3637 4.2816 1.9791 9 7 1.7782 5.9478 1.5975 10 6 1.0123 6.8205 2.3266 11 1 0.0978 6.4796 2.7893 12 6 1.4119 8.1435 2.4693 13 7 2.5244 8.5583 1.9059 14 14 0.3688 9.3323 3.4632 15 1 -0.8244 8.6226 3.9902 16 1 1.1683 9.8653 4.5954 17 1 -0.0672 10.4544 2.5937 18 6 2.2369 -1.1209 0.7646 19 6 2.2364 -1.1207 -0.7654 20 1 1.6112 -1.8582 -1.2686 21 35 3.9226 -0.6768 -1.6736 22 1 -0.3634 0.0791 -1.0245 23 1 -0.3633 -0.9269 0.4438 24 1 -0.3634 0.8477 0.5809 25 1 0.7657 2.2450 1.1317 26 1 2.3187 4.0664 -0.3670 27 1 3.2249 3.6338 1.1027 28 1 2.5993 6.2539 1.1817 29 1 2.8036 9.4819 2.0059 30 1 3.1720 -0.8749 1.2677 31 1 1.6120 -1.8585 1.2683 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908176487.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:40 Heat of formation + Delta-G solvation = -58.034665 kcal Electronic energy + Delta-G solvation = -16911.505270 eV Core-core repulsion = 13853.653961 eV Total energy + Delta-G solvation = -3057.851308 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 304.021 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.31171 -40.10241 -37.79656 -36.24556 -35.30482 -33.38278 -31.30674 -29.80171 -28.74213 -26.57734 -24.04101 -23.01176 -21.37667 -20.65369 -20.01090 -18.22368 -17.37637 -17.04360 -16.69340 -16.45913 -15.81723 -15.77227 -15.34138 -14.95525 -14.13612 -13.97552 -13.66300 -13.54956 -13.49572 -13.31005 -12.91670 -12.55850 -12.45107 -12.34928 -12.11070 -11.78634 -11.58393 -11.01515 -10.57860 -10.52591 -10.15158 -10.06397 -9.64989 -8.51655 -6.02050 0.81680 1.34820 1.42903 1.45444 1.57041 1.89950 2.00076 2.31185 2.55179 3.11955 3.15642 3.35615 3.57528 3.66698 3.94397 4.21490 4.40637 4.43283 4.49883 4.73088 4.79771 4.86901 4.90230 5.24446 5.31478 5.38539 5.91445 6.45660 6.55915 7.02927 7.21629 7.43875 7.93425 8.65527 Molecular weight = 304.02amu Principal moments of inertia in cm(-1) A = 0.037954 B = 0.003167 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.553388 B = 8837.772177 C = 9436.828928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.153 4.153 3 C 0.529 3.471 4 O -0.544 6.544 5 N -0.705 5.705 6 C 0.124 3.876 7 C 0.433 3.567 8 O -0.623 6.623 9 N -0.560 5.560 10 C -0.337 4.337 11 H 0.087 0.913 12 C -0.011 4.011 13 N -0.917 5.917 14 Si 0.997 3.003 15 H -0.269 1.269 16 H -0.271 1.271 17 H -0.271 1.271 18 C -0.112 4.112 19 C -0.097 4.097 20 H 0.174 0.826 21 Br -0.120 7.120 22 H 0.072 0.928 23 H 0.101 0.899 24 H 0.061 0.939 25 H 0.411 0.589 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.398 0.602 29 H 0.280 0.720 30 H 0.097 0.903 31 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.424 -20.746 -5.243 21.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.158 4.158 3 C 0.316 3.684 4 O -0.422 6.422 5 N -0.360 5.360 6 C -0.004 4.004 7 C 0.220 3.780 8 O -0.511 6.511 9 N -0.196 5.196 10 C -0.466 4.466 11 H 0.105 0.895 12 C -0.211 4.211 13 N -0.557 5.557 14 Si 0.820 3.180 15 H -0.193 1.193 16 H -0.196 1.196 17 H -0.197 1.197 18 C -0.150 4.150 19 C -0.194 4.194 20 H 0.191 0.809 21 Br -0.038 7.038 22 H 0.091 0.909 23 H 0.120 0.880 24 H 0.080 0.920 25 H 0.250 0.750 26 H 0.109 0.891 27 H 0.110 0.890 28 H 0.232 0.768 29 H 0.089 0.911 30 H 0.116 0.884 31 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.337 -20.503 -5.650 21.270 hybrid contribution -0.435 1.075 0.480 1.255 sum -0.097 -19.429 -5.170 20.105 Atomic orbital electron populations 1.21453 0.87553 1.04503 1.03574 1.21678 0.97762 0.88152 1.08174 1.20045 0.84527 0.85734 0.78119 1.90914 1.23513 1.83984 1.43768 1.45754 1.27997 1.08375 1.53906 1.20723 0.96089 0.82927 1.00657 1.20431 0.87921 0.83730 0.85905 1.90466 1.28366 1.77804 1.54484 1.41864 1.23734 1.07917 1.46036 1.19786 1.06431 0.90963 1.29419 0.89497 1.26135 0.97745 0.98902 0.98340 1.69691 1.23010 1.18808 1.44221 0.84805 0.77947 0.77406 0.77793 1.19319 1.19646 1.19669 1.23640 1.02489 0.97660 0.91173 1.25913 0.94069 1.02385 0.97004 0.80900 1.97394 1.31783 1.95320 1.79274 0.90859 0.88019 0.92003 0.74984 0.89098 0.89040 0.76774 0.91085 0.88408 0.82651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.73 9.79 71.98 0.70 -1.02 16 2 C -0.15 -3.10 2.61 -52.93 -0.14 -3.24 16 3 C 0.53 15.80 7.39 87.66 0.65 16.44 16 4 O -0.54 -19.25 13.18 -3.02 -0.04 -19.29 16 5 N -0.70 -22.75 5.43 -466.78 -2.53 -25.28 16 6 C 0.12 4.53 6.15 85.63 0.53 5.06 16 7 C 0.43 19.92 7.85 87.66 0.69 20.61 16 8 O -0.62 -31.87 15.24 -3.07 -0.05 -31.92 16 9 N -0.56 -28.15 5.29 -306.98 -1.62 -29.78 16 10 C -0.34 -18.51 9.68 84.04 0.81 -17.70 16 11 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 12 C -0.01 -0.56 5.50 84.92 0.47 -0.09 16 13 N -0.92 -48.81 13.05 21.66 0.28 -48.53 16 14 Si 1.00 41.58 29.55 68.60 2.03 43.61 16 15 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 16 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 17 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 18 C -0.11 -1.70 9.70 30.60 0.30 -1.41 16 19 C -0.10 -1.73 6.69 30.59 0.20 -1.52 16 20 H 0.17 1.96 8.14 -2.39 -0.02 1.94 16 21 Br -0.12 -3.07 30.65 -20.37 -0.62 -3.70 16 22 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.10 0.91 7.90 -2.38 -0.02 0.89 16 24 H 0.06 1.13 6.38 -2.39 -0.02 1.12 16 25 H 0.41 13.04 5.73 -92.71 -0.53 12.50 16 26 H 0.09 3.21 8.14 -2.39 -0.02 3.20 16 27 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 28 H 0.40 19.33 7.90 -92.71 -0.73 18.60 16 29 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 30 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.16 1.19 8.05 -2.39 -0.02 1.18 16 Total: -1.00 -66.57 291.22 1.57 -65.00 By element: Atomic # 1 Polarization: 32.83 SS G_CDS: -0.08 Total: 32.74 kcal Atomic # 6 Polarization: 12.92 SS G_CDS: 4.21 Total: 17.13 kcal Atomic # 7 Polarization: -99.71 SS G_CDS: -3.87 Total: -103.58 kcal Atomic # 8 Polarization: -51.12 SS G_CDS: -0.09 Total: -51.21 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Atomic # 35 Polarization: -3.07 SS G_CDS: -0.62 Total: -3.70 kcal Total: -66.57 1.57 -65.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908176487.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.969 kcal (2) G-P(sol) polarization free energy of solvation -66.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds