Wall clock time and date at job start Tue Mar 31 2020 03:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 S 1.75458 * 124.56834 * 2 1 4 4 C 1.70449 * 92.54685 * 179.97438 * 3 2 1 5 5 N 1.38197 * 124.66516 * 179.97438 * 4 3 2 6 6 S 1.65604 * 120.00005 * 0.02562 * 5 4 3 7 7 O 1.42106 * 106.39975 * 178.54051 * 6 5 4 8 8 O 1.42098 * 106.40120 * 311.45975 * 6 5 4 9 9 C 1.76201 * 107.21711 * 65.00269 * 6 5 4 10 10 H 1.08005 * 120.00040 * 359.97438 * 9 6 5 11 11 C 1.37871 * 119.99937 * 180.02562 * 9 6 5 12 12 N 1.31518 * 119.99958 * 180.02562 * 11 9 6 13 13 Si 1.86803 * 120.00168 * 359.97438 * 11 9 6 14 14 H 1.48503 * 109.46819 * 90.00282 * 13 11 9 15 15 H 1.48501 * 109.47229 * 210.00179 * 13 11 9 16 16 H 1.48498 * 109.47136 * 330.00343 * 13 11 9 17 17 C 1.37220 * 110.66538 * 359.97438 * 4 3 2 18 18 C 1.46446 * 123.62296 * 179.97438 * 17 4 3 19 19 N 1.34777 * 120.00372 * 270.02909 * 18 17 4 20 20 O 1.21739 * 120.00091 * 90.02289 * 18 17 4 21 21 C 1.32431 * 124.57176 * 180.28007 * 2 1 3 22 22 C 1.50703 * 123.41663 * 0.02562 * 21 2 1 23 23 H 1.08995 * 109.47211 * 0.02876 * 1 2 3 24 24 H 1.09003 * 109.47110 * 120.02697 * 1 2 3 25 25 H 1.09005 * 109.47293 * 240.02471 * 1 2 3 26 26 H 0.96999 * 120.00106 * 180.02562 * 5 4 3 27 27 H 0.97004 * 120.00083 * 180.02562 * 12 11 9 28 28 H 0.97001 * 120.00485 * 180.02562 * 19 18 17 29 29 H 0.97005 * 119.99790 * 359.71930 * 19 18 17 30 30 H 1.08997 * 109.47266 * 270.25262 * 22 21 2 31 31 H 1.09005 * 109.46914 * 30.25363 * 22 21 2 32 32 H 1.09004 * 109.46880 * 150.25211 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5025 1.4448 0.0000 4 6 3.9477 0.5410 0.0008 5 7 5.2168 1.0880 0.0006 6 16 5.4097 2.7327 0.0002 7 8 6.8099 2.9725 0.0348 8 8 4.5599 3.2361 -1.0214 9 6 4.7641 3.3339 1.5255 10 1 4.3456 2.6445 2.2439 11 6 4.7922 4.6844 1.8014 12 7 4.3107 5.1331 2.9401 13 14 5.5152 5.8769 0.5586 14 1 4.4466 6.3400 -0.3627 15 1 6.0945 7.0439 1.2712 16 1 6.5794 5.1947 -0.2208 17 6 3.6775 -0.8043 0.0016 18 6 4.7134 -1.8395 0.0018 19 7 5.1902 -2.3161 -1.1652 20 8 5.1440 -2.2695 1.0562 21 6 2.2585 -1.0904 -0.0053 22 6 1.6937 -2.4876 -0.0127 23 1 -0.3633 1.0276 -0.0005 24 1 -0.3633 -0.5143 -0.8898 25 1 -0.3634 -0.5135 0.8902 26 1 5.9947 0.5085 0.0007 27 1 4.3301 6.0833 3.1341 28 1 5.8761 -3.0020 -1.1651 29 1 4.8443 -1.9763 -2.0054 30 1 1.5529 -2.8280 1.0131 31 1 0.7346 -2.4890 -0.5309 32 1 2.3849 -3.1562 -0.5258 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192935509.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:26 Heat of formation + Delta-G solvation = -96.453636 kcal Electronic energy + Delta-G solvation = -21002.214478 eV Core-core repulsion = 17601.921461 eV Total energy + Delta-G solvation = -3400.293017 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 304.038 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.69179 -37.34250 -36.09066 -35.32086 -34.81358 -33.46483 -33.20236 -30.65671 -29.12013 -26.64541 -25.32268 -23.74625 -20.34874 -19.99215 -18.69748 -18.19356 -17.65927 -17.20837 -16.74406 -16.13437 -15.46032 -15.14523 -14.44859 -14.23924 -13.95988 -13.78323 -13.65184 -13.21216 -13.10989 -12.68465 -12.62245 -12.41192 -12.09336 -11.94626 -11.58716 -11.40592 -11.09668 -11.00362 -10.77967 -10.38942 -10.32854 -10.06373 -9.82648 -9.63989 -9.35417 -9.23237 -7.92469 -7.64244 -6.94271 -5.53533 1.36143 1.51052 1.61593 2.22587 2.54345 2.75022 2.96380 3.06264 3.13622 3.77122 3.81317 3.91046 4.43886 4.86380 5.01976 5.14288 5.25526 5.41567 5.58868 5.61140 5.66871 5.73683 5.77157 5.91842 6.01440 6.16022 6.45659 6.69093 6.79640 7.11478 7.32096 7.38297 8.06455 8.35555 8.52258 10.17007 Molecular weight = 304.04amu Principal moments of inertia in cm(-1) A = 0.019556 B = 0.006406 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.459289 B = 4369.784495 C = 5154.057620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.246 4.246 3 S 0.268 5.732 4 C 0.101 3.899 5 N -1.018 6.018 6 S 2.641 3.359 7 O -0.986 6.986 8 O -0.984 6.984 9 C -1.008 5.008 10 H 0.131 0.869 11 C 0.159 3.841 12 N -0.808 5.808 13 Si 0.798 3.202 14 H -0.241 1.241 15 H -0.251 1.251 16 H -0.223 1.223 17 C -0.245 4.245 18 C 0.599 3.401 19 N -0.851 5.851 20 O -0.536 6.536 21 C -0.051 4.051 22 C -0.089 4.089 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.420 0.580 27 H 0.284 0.716 28 H 0.399 0.601 29 H 0.403 0.597 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.177 -11.052 -8.522 15.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.364 4.364 3 S 0.531 5.469 4 C -0.121 4.121 5 N -0.758 5.758 6 S 2.744 3.256 7 O -0.976 6.976 8 O -0.974 6.974 9 C -1.144 5.144 10 H 0.148 0.852 11 C -0.063 4.063 12 N -0.436 5.436 13 Si 0.617 3.383 14 H -0.165 1.165 15 H -0.174 1.174 16 H -0.145 1.145 17 C -0.267 4.267 18 C 0.382 3.618 19 N -0.415 5.415 20 O -0.412 6.412 21 C -0.063 4.063 22 C -0.148 4.148 23 H 0.085 0.915 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.254 0.746 27 H 0.095 0.905 28 H 0.230 0.770 29 H 0.232 0.768 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.008 -8.860 -8.339 13.570 hybrid contribution 1.129 -1.315 -0.093 1.736 sum -4.879 -10.175 -8.432 14.086 Atomic orbital electron populations 1.20187 0.87798 1.02684 1.02260 1.24070 1.00383 0.96600 1.15329 1.84509 0.89078 1.02977 1.70295 1.21491 0.91918 0.96357 1.02310 1.53246 1.08692 1.28863 1.85002 1.02684 0.74835 0.70147 0.77913 1.93534 1.33301 1.81385 1.89415 1.93478 1.68197 1.75374 1.60301 1.30094 1.57445 1.03005 1.23895 0.85158 1.24331 0.90313 0.96906 0.94709 1.69967 1.36070 1.16481 1.21073 0.87916 0.82859 0.84477 0.83044 1.16495 1.17444 1.14496 1.19395 0.93850 0.90724 1.22722 1.17456 0.80365 0.80493 0.83497 1.43940 1.44260 1.44493 1.08762 1.90860 1.59503 1.59466 1.31406 1.19096 0.89267 0.95860 1.02097 1.20431 1.00463 0.91541 1.02395 0.91482 0.91097 0.91026 0.74561 0.90512 0.77029 0.76834 0.91027 0.91188 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 9.44 36.01 0.34 -0.43 16 2 C -0.25 -3.66 6.42 -36.23 -0.23 -3.89 16 3 S 0.27 5.00 20.02 -107.50 -2.15 2.85 16 4 C 0.10 1.95 6.88 -15.05 -0.10 1.84 16 5 N -1.02 -20.72 5.82 30.95 0.18 -20.54 16 6 S 2.64 64.52 3.82 -107.50 -0.41 64.11 16 7 O -0.99 -25.90 16.02 -57.17 -0.92 -26.82 16 8 O -0.98 -24.40 15.17 -57.17 -0.87 -25.27 16 9 C -1.01 -27.17 9.47 30.60 0.29 -26.88 16 10 H 0.13 3.60 8.06 -52.48 -0.42 3.18 16 11 C 0.16 4.37 5.47 -17.82 -0.10 4.27 16 12 N -0.81 -22.32 13.96 55.43 0.77 -21.55 16 13 Si 0.80 19.57 26.54 -169.99 -4.51 15.06 16 14 H -0.24 -5.70 7.11 56.52 0.40 -5.30 16 15 H -0.25 -5.66 7.11 56.52 0.40 -5.26 16 16 H -0.22 -5.59 5.61 56.52 0.32 -5.28 16 17 C -0.25 -4.20 5.75 -104.39 -0.60 -4.80 16 18 C 0.60 9.68 6.35 -12.96 -0.08 9.60 16 19 N -0.85 -9.33 8.87 30.21 0.27 -9.07 16 20 O -0.54 -10.69 17.95 5.15 0.09 -10.60 16 21 C -0.05 -0.76 6.00 -103.97 -0.62 -1.38 16 22 C -0.09 -1.01 9.67 36.01 0.35 -0.66 16 23 H 0.07 0.71 8.13 -51.93 -0.42 0.28 16 24 H 0.07 0.63 7.92 -51.93 -0.41 0.22 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.42 7.65 8.29 -34.47 -0.29 7.36 16 27 H 0.28 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.40 3.54 8.93 -40.82 -0.36 3.18 16 29 H 0.40 3.52 8.81 -40.82 -0.36 3.16 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.62 7.35 -51.93 -0.38 0.24 16 32 H 0.06 0.64 7.70 -51.93 -0.40 0.24 16 LS Contribution 303.21 15.07 4.57 4.57 Total: -1.00 -33.30 303.21 -6.85 -40.15 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -3.11 Total: 9.43 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: -0.76 Total: -22.33 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: 1.22 Total: -51.15 kcal Atomic # 8 Polarization: -60.99 SS G_CDS: -1.69 Total: -62.68 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.51 Total: 15.06 kcal Atomic # 16 Polarization: 69.52 SS G_CDS: -2.56 Total: 66.95 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.30 -6.85 -40.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192935509.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.303 kcal (2) G-P(sol) polarization free energy of solvation -33.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds