Wall clock time and date at job start Tue Mar 31 2020 03:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 S 1.75458 * 124.56834 * 2 1 4 4 C 1.70449 * 92.54685 * 179.97438 * 3 2 1 5 5 N 1.38197 * 124.66516 * 179.97438 * 4 3 2 6 6 S 1.65604 * 120.00005 * 0.02562 * 5 4 3 7 7 O 1.42106 * 106.39975 * 178.54051 * 6 5 4 8 8 O 1.42098 * 106.40120 * 311.45975 * 6 5 4 9 9 C 1.76201 * 107.21711 * 65.00269 * 6 5 4 10 10 H 1.08005 * 120.00040 * 359.97438 * 9 6 5 11 11 C 1.37871 * 119.99937 * 180.02562 * 9 6 5 12 12 N 1.31518 * 119.99958 * 180.02562 * 11 9 6 13 13 Si 1.86803 * 120.00168 * 359.97438 * 11 9 6 14 14 H 1.48503 * 109.46819 * 90.00282 * 13 11 9 15 15 H 1.48501 * 109.47229 * 210.00179 * 13 11 9 16 16 H 1.48498 * 109.47136 * 330.00343 * 13 11 9 17 17 C 1.37220 * 110.66538 * 359.97438 * 4 3 2 18 18 C 1.46446 * 123.62296 * 179.97438 * 17 4 3 19 19 N 1.34777 * 120.00372 * 270.02909 * 18 17 4 20 20 O 1.21739 * 120.00091 * 90.02289 * 18 17 4 21 21 C 1.32431 * 124.57176 * 180.28007 * 2 1 3 22 22 C 1.50703 * 123.41663 * 0.02562 * 21 2 1 23 23 H 1.08995 * 109.47211 * 0.02876 * 1 2 3 24 24 H 1.09003 * 109.47110 * 120.02697 * 1 2 3 25 25 H 1.09005 * 109.47293 * 240.02471 * 1 2 3 26 26 H 0.96999 * 120.00106 * 180.02562 * 5 4 3 27 27 H 0.97004 * 120.00083 * 180.02562 * 12 11 9 28 28 H 0.97001 * 120.00485 * 180.02562 * 19 18 17 29 29 H 0.97005 * 119.99790 * 359.71930 * 19 18 17 30 30 H 1.08997 * 109.47266 * 270.25262 * 22 21 2 31 31 H 1.09005 * 109.46914 * 30.25363 * 22 21 2 32 32 H 1.09004 * 109.46880 * 150.25211 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5025 1.4448 0.0000 4 6 3.9477 0.5410 0.0008 5 7 5.2168 1.0880 0.0006 6 16 5.4097 2.7327 0.0002 7 8 6.8099 2.9725 0.0348 8 8 4.5599 3.2361 -1.0214 9 6 4.7641 3.3339 1.5255 10 1 4.3456 2.6445 2.2439 11 6 4.7922 4.6844 1.8014 12 7 4.3107 5.1331 2.9401 13 14 5.5152 5.8769 0.5586 14 1 4.4466 6.3400 -0.3627 15 1 6.0945 7.0439 1.2712 16 1 6.5794 5.1947 -0.2208 17 6 3.6775 -0.8043 0.0016 18 6 4.7134 -1.8395 0.0018 19 7 5.1902 -2.3161 -1.1652 20 8 5.1440 -2.2695 1.0562 21 6 2.2585 -1.0904 -0.0053 22 6 1.6937 -2.4876 -0.0127 23 1 -0.3633 1.0276 -0.0005 24 1 -0.3633 -0.5143 -0.8898 25 1 -0.3634 -0.5135 0.8902 26 1 5.9947 0.5085 0.0007 27 1 4.3301 6.0833 3.1341 28 1 5.8761 -3.0020 -1.1651 29 1 4.8443 -1.9763 -2.0054 30 1 1.5529 -2.8280 1.0131 31 1 0.7346 -2.4890 -0.5309 32 1 2.3849 -3.1562 -0.5258 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192935509.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:26 Heat of formation + Delta-G solvation = -125.318396 kcal Electronic energy + Delta-G solvation = -21003.466148 eV Core-core repulsion = 17601.921461 eV Total energy + Delta-G solvation = -3401.544687 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 304.038 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.99795 -38.65452 -38.03350 -36.86533 -36.72248 -35.27293 -34.63530 -31.85577 -30.12352 -28.71963 -26.46134 -25.08391 -21.77773 -21.56246 -20.12040 -19.99427 -19.09632 -18.92074 -17.94831 -17.75366 -17.04682 -16.70714 -16.29489 -15.68795 -15.38846 -15.22921 -15.04667 -14.99163 -14.36825 -14.06209 -13.91490 -13.54066 -13.49870 -13.31255 -13.10078 -13.02840 -13.00876 -12.75295 -12.51444 -12.00087 -11.75961 -11.60710 -11.37834 -11.21521 -11.17584 -10.76184 -9.32392 -9.01945 -8.99054 -7.62962 -0.36693 0.02281 0.20549 0.92477 1.02755 1.12518 1.17166 1.32241 1.46397 1.84241 2.09548 2.37035 2.66984 2.95865 3.70392 3.94085 4.02286 4.05125 4.32163 4.49047 4.70885 4.80343 4.83463 4.94914 4.98667 5.18636 5.29649 5.35031 5.53670 5.66725 5.81767 5.93975 6.32155 6.43683 7.23780 8.15798 Molecular weight = 304.04amu Principal moments of inertia in cm(-1) A = 0.019556 B = 0.006406 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.459289 B = 4369.784495 C = 5154.057620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.218 4.218 3 S 0.194 5.806 4 C 0.063 3.937 5 N -1.014 6.014 6 S 2.669 3.331 7 O -1.008 7.008 8 O -0.990 6.990 9 C -1.028 5.028 10 H 0.109 0.891 11 C 0.119 3.881 12 N -0.839 5.839 13 Si 0.819 3.181 14 H -0.228 1.228 15 H -0.217 1.217 16 H -0.233 1.233 17 C -0.229 4.229 18 C 0.597 3.403 19 N -0.821 5.821 20 O -0.580 6.580 21 C -0.061 4.061 22 C -0.086 4.086 23 H 0.068 0.932 24 H 0.102 0.898 25 H 0.090 0.910 26 H 0.427 0.573 27 H 0.295 0.705 28 H 0.414 0.586 29 H 0.418 0.582 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.358 -12.571 -9.994 17.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.336 4.336 3 S 0.458 5.542 4 C -0.156 4.156 5 N -0.758 5.758 6 S 2.771 3.229 7 O -0.999 6.999 8 O -0.979 6.979 9 C -1.162 5.162 10 H 0.127 0.873 11 C -0.100 4.100 12 N -0.468 5.468 13 Si 0.636 3.364 14 H -0.151 1.151 15 H -0.139 1.139 16 H -0.156 1.156 17 C -0.252 4.252 18 C 0.379 3.621 19 N -0.386 5.386 20 O -0.459 6.459 21 C -0.073 4.073 22 C -0.145 4.145 23 H 0.087 0.913 24 H 0.121 0.879 25 H 0.108 0.892 26 H 0.264 0.736 27 H 0.106 0.894 28 H 0.247 0.753 29 H 0.249 0.751 30 H 0.092 0.908 31 H 0.120 0.880 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.195 -10.370 -9.841 16.005 hybrid contribution 1.389 -1.041 0.349 1.770 sum -5.806 -11.411 -9.493 15.938 Atomic orbital electron populations 1.20424 0.84610 1.03642 1.04592 1.24472 1.01908 0.93981 1.13196 1.84644 0.90979 1.06856 1.71718 1.21577 0.91048 0.97166 1.05799 1.52638 1.09800 1.27519 1.85869 1.01672 0.73794 0.70813 0.76636 1.93496 1.34241 1.82690 1.89427 1.93457 1.68241 1.76484 1.59734 1.30465 1.57449 1.03079 1.25201 0.87305 1.25025 0.90648 0.98246 0.96107 1.69988 1.36994 1.17641 1.22153 0.87569 0.82640 0.84166 0.82047 1.15087 1.13909 1.15600 1.19858 0.95564 0.90070 1.19685 1.17416 0.80209 0.80312 0.84117 1.43655 1.43392 1.43630 1.07884 1.90853 1.60935 1.61031 1.33131 1.19544 0.88081 0.97815 1.01851 1.20545 1.01991 0.88843 1.03132 0.91340 0.87933 0.89155 0.73610 0.89411 0.75290 0.75108 0.90809 0.88045 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.37 9.44 71.24 0.67 -0.70 16 2 C -0.22 -6.06 6.42 24.57 0.16 -5.90 16 3 S 0.19 7.33 20.02 -56.49 -1.13 6.20 16 4 C 0.06 2.45 6.88 83.45 0.57 3.03 16 5 N -1.01 -41.91 5.82 -55.98 -0.33 -42.24 16 6 S 2.67 132.55 3.82 -56.49 -0.22 132.34 16 7 O -1.01 -53.53 16.02 -128.00 -2.05 -55.58 16 8 O -0.99 -49.58 15.17 -128.00 -1.94 -51.52 16 9 C -1.03 -57.14 9.47 67.73 0.64 -56.50 16 10 H 0.11 6.35 8.06 -2.91 -0.02 6.32 16 11 C 0.12 6.63 5.47 84.65 0.46 7.09 16 12 N -0.84 -47.14 13.96 21.45 0.30 -46.84 16 13 Si 0.82 39.37 26.54 68.60 1.82 41.19 16 14 H -0.23 -10.40 7.11 99.48 0.71 -9.69 16 15 H -0.22 -9.20 7.11 99.48 0.71 -8.50 16 16 H -0.23 -11.60 5.61 99.48 0.56 -11.04 16 17 C -0.23 -7.59 5.75 -19.71 -0.11 -7.70 16 18 C 0.60 18.46 6.35 86.38 0.55 19.01 16 19 N -0.82 -16.06 8.87 -176.53 -1.57 -17.63 16 20 O -0.58 -22.73 17.95 -4.47 -0.08 -22.81 16 21 C -0.06 -1.68 6.00 -19.31 -0.12 -1.80 16 22 C -0.09 -1.61 9.67 71.24 0.69 -0.93 16 23 H 0.07 1.28 8.13 -2.39 -0.02 1.26 16 24 H 0.10 1.32 7.92 -2.39 -0.02 1.30 16 25 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 26 H 0.43 15.76 8.29 -96.74 -0.80 14.96 16 27 H 0.30 14.82 8.31 -92.71 -0.77 14.05 16 28 H 0.41 6.26 8.93 -92.71 -0.83 5.43 16 29 H 0.42 6.10 8.81 -92.70 -0.82 5.29 16 30 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.10 1.28 7.35 -2.38 -0.02 1.26 16 32 H 0.07 1.19 7.70 -2.39 -0.02 1.17 16 Total: -1.00 -73.64 303.21 -3.05 -76.70 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: -1.38 Total: 24.60 kcal Atomic # 6 Polarization: -47.91 SS G_CDS: 3.52 Total: -44.39 kcal Atomic # 7 Polarization: -105.12 SS G_CDS: -1.59 Total: -106.71 kcal Atomic # 8 Polarization: -125.84 SS G_CDS: -4.07 Total: -129.91 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 1.82 Total: 41.19 kcal Atomic # 16 Polarization: 139.88 SS G_CDS: -1.35 Total: 138.53 kcal Total: -73.64 -3.05 -76.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192935509.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.620 kcal (2) G-P(sol) polarization free energy of solvation -73.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds