Wall clock time and date at job start Tue Mar 31 2020 03:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00008 * 2 1 4 4 H 1.48509 * 109.46986 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46910 * 299.99536 * 3 2 1 6 6 H 1.48497 * 109.47573 * 59.99555 * 3 2 1 7 7 C 1.37878 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99958 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00013 * 0.02562 * 7 2 1 10 10 O 1.42098 * 106.40496 * 293.53880 * 9 7 2 11 11 O 1.42099 * 106.40200 * 66.45964 * 9 7 2 12 12 N 1.65605 * 107.22024 * 179.97438 * 9 7 2 13 13 C 1.38872 * 119.99829 * 68.08465 * 12 9 7 14 14 C 1.38891 * 120.16893 * 324.41188 * 13 12 9 15 15 C 1.38113 * 120.05270 * 179.79439 * 14 13 12 16 16 Cl 1.73600 * 119.80191 * 180.23264 * 15 14 13 17 17 C 1.38764 * 120.39224 * 0.46329 * 15 14 13 18 18 C 1.37690 * 120.33861 * 359.79328 * 17 15 14 19 19 C 1.39770 * 119.93859 * 359.97438 * 18 17 15 20 20 C 1.47375 * 120.19334 * 179.97438 * 19 18 17 21 21 N 1.34774 * 120.00047 * 0.02562 * 20 19 18 22 22 O 1.21606 * 120.00191 * 180.02562 * 20 19 18 23 23 H 0.97002 * 119.99920 * 0.02562 * 1 2 3 24 24 H 0.96998 * 120.00033 * 248.08734 * 12 9 7 25 25 H 1.08000 * 119.97276 * 0.02562 * 14 13 12 26 26 H 1.07993 * 119.82733 * 179.77081 * 17 15 14 27 27 H 1.08004 * 120.03172 * 179.97438 * 18 17 15 28 28 H 0.97007 * 120.00099 * 359.97438 * 21 20 19 29 29 H 0.97002 * 120.00441 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 16 1.1235 -2.7200 0.0005 10 8 0.4509 -2.7950 1.2500 11 8 0.4519 -2.7955 -1.2494 12 7 2.2482 -3.9355 0.0005 13 6 3.0493 -4.1402 1.1163 14 6 3.4871 -3.0583 1.8693 15 6 4.2802 -3.2650 2.9809 16 17 4.8188 -1.9085 3.9208 17 6 4.6529 -4.5502 3.3482 18 6 4.2324 -5.6340 2.6104 19 6 3.4255 -5.4413 1.4856 20 6 2.9726 -6.5973 0.6914 21 7 3.3361 -7.8447 1.0494 22 8 2.2710 -6.4256 -0.2868 23 1 -0.4850 0.8401 -0.0004 24 1 2.3475 -4.5044 -0.7788 25 1 3.2041 -2.0549 1.5874 26 1 5.2764 -4.7010 4.2171 27 1 4.5259 -6.6321 2.9005 28 1 3.8961 -7.9817 1.8296 29 1 3.0378 -8.6056 0.5270 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192978957.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:06 Heat of formation + Delta-G solvation = -138.983442 kcal Electronic energy + Delta-G solvation = -20718.677163 eV Core-core repulsion = 17178.663114 eV Total energy + Delta-G solvation = -3540.014049 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 304.012 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.47554 -39.45030 -37.69104 -37.47715 -36.34843 -36.21077 -35.28952 -34.59852 -31.88393 -30.24718 -28.43619 -25.14904 -23.84990 -22.03139 -20.91980 -19.96742 -19.12172 -18.45749 -18.38140 -17.90924 -17.08595 -16.47428 -16.20448 -16.09705 -15.84829 -15.76096 -15.35408 -14.62232 -14.47174 -14.07744 -13.68104 -13.56433 -13.11375 -13.07771 -12.96986 -12.68321 -12.60884 -12.36304 -12.28273 -11.91934 -11.78986 -11.30024 -11.13884 -10.91352 -10.74075 -9.94494 -9.35393 -8.82454 -7.58316 -0.41404 0.01294 0.29501 1.02616 1.32365 1.33405 1.51989 1.70141 2.16736 2.47713 2.52099 2.64766 2.69267 3.53811 3.68707 3.86859 3.96097 4.09321 4.15470 4.40156 4.51312 4.83344 5.00478 5.11767 5.22646 5.27381 5.58580 5.79368 5.83441 6.17443 6.42166 6.68298 7.30201 8.15061 Molecular weight = 304.01amu Principal moments of inertia in cm(-1) A = 0.013952 B = 0.007490 C = 0.005176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.384453 B = 3737.633642 C = 5408.194681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.076 3.924 3 Si 0.990 3.010 4 H -0.242 1.242 5 H -0.259 1.259 6 H -0.255 1.255 7 C -1.030 5.030 8 H 0.130 0.870 9 S 2.699 3.301 10 O -1.025 7.025 11 O -1.036 7.036 12 N -1.048 6.048 13 C 0.231 3.769 14 C -0.209 4.209 15 C 0.021 3.979 16 Cl -0.056 7.056 17 C -0.136 4.136 18 C -0.024 4.024 19 C -0.196 4.196 20 C 0.564 3.436 21 N -0.818 5.818 22 O -0.587 6.587 23 H 0.302 0.698 24 H 0.429 0.571 25 H 0.149 0.851 26 H 0.184 0.816 27 H 0.197 0.803 28 H 0.421 0.579 29 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.495 -11.471 9.299 21.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.139 4.139 3 Si 0.807 3.193 4 H -0.165 1.165 5 H -0.183 1.183 6 H -0.179 1.179 7 C -1.164 5.164 8 H 0.148 0.852 9 S 2.802 3.198 10 O -1.015 7.015 11 O -1.026 7.026 12 N -0.797 5.797 13 C 0.130 3.870 14 C -0.231 4.231 15 C -0.006 4.006 16 Cl -0.027 7.027 17 C -0.155 4.155 18 C -0.042 4.042 19 C -0.204 4.204 20 C 0.351 3.649 21 N -0.384 5.384 22 O -0.469 6.469 23 H 0.112 0.888 24 H 0.271 0.729 25 H 0.166 0.834 26 H 0.201 0.799 27 H 0.214 0.786 28 H 0.254 0.746 29 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 13.888 -11.099 8.848 19.858 hybrid contribution 0.262 0.845 -0.596 1.067 sum 14.150 -10.254 8.253 19.325 Atomic orbital electron populations 1.69992 1.08888 1.32634 1.40418 1.26027 0.95359 1.05240 0.87233 0.85099 0.79794 0.74763 0.79605 1.16471 1.18289 1.17937 1.30789 1.07101 1.11102 1.67456 0.85176 1.00782 0.72870 0.74265 0.71925 1.93338 1.73859 1.87929 1.46397 1.93325 1.74409 1.88123 1.46766 1.53701 1.52220 1.51052 1.22689 1.17517 0.89508 0.93321 0.86691 1.21735 1.02135 1.00596 0.98601 1.21024 0.96859 0.90522 0.92230 1.98375 1.88253 1.45041 1.71042 1.21350 1.02954 0.88392 1.02790 1.21584 0.91608 1.01379 0.89667 1.19992 1.08130 0.90917 1.01326 1.18131 0.78852 0.84684 0.83257 1.43372 1.54789 1.06166 1.34052 1.90708 1.40068 1.86015 1.30063 0.88770 0.72887 0.83381 0.79866 0.78604 0.74569 0.75201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.25 13.19 21.45 0.28 -52.97 15 2 C 0.08 4.19 5.46 84.66 0.46 4.65 15 3 Si 0.99 41.00 29.54 68.60 2.03 43.03 15 4 H -0.24 -9.26 7.11 99.48 0.71 -8.55 15 5 H -0.26 -10.17 7.11 99.48 0.71 -9.46 15 6 H -0.26 -9.94 7.11 99.48 0.71 -9.23 15 7 C -1.03 -57.18 7.65 67.73 0.52 -56.66 15 8 H 0.13 6.46 6.77 -2.91 -0.02 6.44 15 9 S 2.70 156.02 4.65 -56.49 -0.26 155.75 15 10 O -1.03 -64.36 17.49 -128.00 -2.24 -66.59 15 11 O -1.04 -66.74 18.02 -128.00 -2.31 -69.05 15 12 N -1.05 -48.96 5.06 -50.96 -0.26 -49.22 15 13 C 0.23 9.16 6.15 38.71 0.24 9.40 15 14 C -0.21 -8.05 8.80 22.40 0.20 -7.86 15 15 C 0.02 0.63 6.32 22.37 0.14 0.77 15 16 Cl -0.06 -1.52 28.94 -2.72 -0.08 -1.60 15 17 C -0.14 -2.60 9.80 22.27 0.22 -2.38 15 18 C -0.02 -0.41 9.53 22.51 0.21 -0.20 15 19 C -0.20 -5.70 5.89 -19.98 -0.12 -5.81 15 20 C 0.56 15.99 8.03 86.65 0.70 16.68 15 21 N -0.82 -11.73 8.82 -175.93 -1.55 -13.28 15 22 O -0.59 -22.83 14.75 -4.05 -0.06 -22.89 15 23 H 0.30 16.11 8.31 -92.71 -0.77 15.34 15 24 H 0.43 19.33 6.56 -96.74 -0.63 18.69 15 25 H 0.15 6.56 4.42 -2.91 -0.01 6.54 15 26 H 0.18 1.91 8.06 -2.91 -0.02 1.89 15 27 H 0.20 0.93 6.40 -2.91 -0.02 0.91 15 28 H 0.42 2.24 6.86 -92.70 -0.64 1.60 15 29 H 0.42 4.88 8.93 -92.71 -0.83 4.05 15 Total: -1.00 -87.31 285.71 -2.70 -90.01 By element: Atomic # 1 Polarization: 29.06 SS G_CDS: -0.82 Total: 28.23 kcal Atomic # 6 Polarization: -43.98 SS G_CDS: 2.57 Total: -41.42 kcal Atomic # 7 Polarization: -113.95 SS G_CDS: -1.53 Total: -115.47 kcal Atomic # 8 Polarization: -153.93 SS G_CDS: -4.60 Total: -158.53 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Atomic # 16 Polarization: 156.02 SS G_CDS: -0.26 Total: 155.75 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -0.08 Total: -1.60 kcal Total: -87.31 -2.70 -90.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192978957.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.974 kcal (2) G-P(sol) polarization free energy of solvation -87.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds