Wall clock time and date at job start Tue Mar 31 2020 03:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34193 * 119.45510 * 2 1 4 4 O 1.21802 * 118.55807 * 0.02562 * 3 2 1 5 5 N 1.33332 * 122.88747 * 179.97438 * 3 2 1 6 6 C 1.32043 * 121.51037 * 359.77118 * 5 3 2 7 7 O 1.34908 * 120.65555 * 180.24470 * 6 5 3 8 8 C 1.47397 * 118.69047 * 0.46518 * 6 5 3 9 9 N 1.32204 * 121.24837 * 179.80772 * 8 6 5 10 10 O 1.21793 * 120.00370 * 174.21999 * 9 8 6 11 11 C 1.35865 * 119.45728 * 179.97438 * 2 1 3 12 12 N 1.35046 * 120.84080 * 359.97438 * 11 2 1 13 13 S 1.65596 * 120.00099 * 86.06812 * 12 11 2 14 14 O 1.42094 * 106.40586 * 105.63281 * 13 12 11 15 15 O 1.42099 * 106.40156 * 238.55723 * 13 12 11 16 16 C 1.76207 * 107.21735 * 352.09344 * 13 12 11 17 17 H 1.07994 * 120.00159 * 0.02562 * 16 13 12 18 18 C 1.37878 * 119.99924 * 180.02562 * 16 13 12 19 19 N 1.31521 * 120.00211 * 0.02562 * 18 16 13 20 20 Si 1.86791 * 120.00128 * 180.02562 * 18 16 13 21 21 H 1.48502 * 109.47441 * 59.99879 * 20 18 16 22 22 H 1.48497 * 109.47467 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47259 * 300.00128 * 20 18 16 24 24 H 1.08999 * 109.46905 * 216.03277 * 1 2 3 25 25 H 1.09003 * 109.46652 * 336.02984 * 1 2 3 26 26 H 1.09003 * 109.47236 * 96.02494 * 1 2 3 27 27 H 0.96703 * 114.00142 * 0.21943 * 7 6 5 28 28 H 0.97003 * 119.99827 * 266.06020 * 12 11 2 29 29 H 0.96997 * 120.00229 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1249 1.1685 0.0000 4 8 1.4797 2.2016 0.0005 5 7 3.4559 1.2483 0.0005 6 6 4.2122 0.1659 0.0055 7 8 5.5574 0.2668 0.0109 8 6 3.5576 -1.1547 0.0002 9 7 4.2657 -2.2711 0.0010 10 8 3.7053 -3.3477 0.1028 11 6 2.1332 -1.1830 0.0005 12 7 1.4641 -2.3560 0.0016 13 16 0.9678 -3.0275 -1.4285 14 8 1.8384 -4.1216 -1.6816 15 8 -0.4440 -3.1620 -1.3401 16 6 1.2763 -1.8427 -2.6958 17 1 1.7153 -0.8879 -2.4471 18 6 0.9571 -2.1346 -4.0049 19 7 0.4219 -3.2972 -4.3078 20 14 1.2847 -0.8790 -5.3485 21 1 2.7365 -0.5696 -5.3937 22 1 0.8550 -1.4316 -6.6581 23 1 0.5227 0.3630 -5.0618 24 1 -0.3633 -0.8311 0.6045 25 1 -0.3633 0.9391 0.4175 26 1 -0.3634 -0.1079 -1.0220 27 1 5.8836 1.1771 0.0140 28 1 1.2742 -2.8053 0.8400 29 1 0.1970 -3.5025 -5.2288 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192987708.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:28 Heat of formation + Delta-G solvation = -115.494869 kcal Electronic energy + Delta-G solvation = -24185.569350 eV Core-core repulsion = 20238.157429 eV Total energy + Delta-G solvation = -3947.411921 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 304.040 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.46778 -40.99766 -40.16403 -39.01848 -37.56518 -36.42411 -36.34454 -35.62501 -35.27690 -32.77728 -29.22194 -28.57062 -27.13230 -25.40818 -23.79437 -21.84865 -21.44817 -20.91570 -19.49075 -19.34754 -18.78886 -18.09691 -17.80642 -17.52242 -17.09370 -16.98658 -16.32466 -16.14610 -15.84655 -15.53201 -15.35311 -14.91993 -14.62963 -14.11831 -13.75790 -13.66439 -13.38303 -13.17608 -12.76777 -12.60263 -12.53159 -12.45527 -12.36339 -11.97665 -11.67362 -11.59228 -11.40116 -11.16720 -10.32403 -10.11939 -8.96507 -7.73791 -1.60014 -0.66971 -0.19507 0.69720 1.05322 1.22350 1.24456 1.36209 1.47790 1.96941 2.12811 2.20746 2.42435 2.50049 2.92419 3.13524 3.34001 3.66572 3.85565 4.14758 4.16298 4.46360 4.54480 4.59493 4.71851 5.01440 5.49053 5.54507 5.80811 6.09752 6.47553 6.57967 7.02473 8.02232 Molecular weight = 304.04amu Principal moments of inertia in cm(-1) A = 0.014023 B = 0.008347 C = 0.007413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.184769 B = 3353.510689 C = 3776.320690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.507 5.507 3 C 0.668 3.332 4 O -0.528 6.528 5 N -0.616 5.616 6 C 0.528 3.472 7 O -0.411 6.411 8 C -0.251 4.251 9 N -0.304 5.304 10 O 0.099 5.901 11 C 0.578 3.422 12 N -1.048 6.048 13 S 2.700 3.300 14 O -0.975 6.975 15 O -0.995 6.995 16 C -1.042 5.042 17 H 0.099 0.901 18 C 0.095 3.905 19 N -0.868 5.868 20 Si 0.969 3.031 21 H -0.262 1.262 22 H -0.250 1.250 23 H -0.254 1.254 24 H 0.123 0.877 25 H 0.127 0.873 26 H 0.091 0.909 27 H 0.444 0.556 28 H 0.460 0.540 29 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.356 5.355 8.245 10.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.224 5.224 3 C 0.369 3.631 4 O -0.402 6.402 5 N -0.376 5.376 6 C 0.323 3.677 7 O -0.206 6.206 8 C -0.376 4.376 9 N 0.188 4.812 10 O -0.272 6.272 11 C 0.349 3.651 12 N -0.809 5.809 13 S 2.801 3.199 14 O -0.965 6.965 15 O -0.985 6.985 16 C -1.174 5.174 17 H 0.117 0.883 18 C -0.122 4.122 19 N -0.497 5.497 20 Si 0.788 3.212 21 H -0.186 1.186 22 H -0.174 1.174 23 H -0.178 1.178 24 H 0.141 0.859 25 H 0.145 0.855 26 H 0.110 0.890 27 H 0.306 0.694 28 H 0.309 0.691 29 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.060 6.661 7.759 11.003 hybrid contribution -0.819 0.579 -0.548 1.143 sum 3.241 7.240 7.212 10.721 Atomic orbital electron populations 1.22882 0.73577 1.08364 1.06686 1.47527 1.13142 1.06330 1.55405 1.17320 0.85137 0.82447 0.78166 1.90943 1.65518 1.31574 1.52187 1.69550 1.04037 1.27774 1.36270 1.21254 0.85291 0.86081 0.75104 1.85002 1.12705 1.39136 1.83778 1.22455 0.87863 0.96623 1.30697 1.73364 1.28910 0.94834 0.84126 1.93831 1.79788 1.19168 1.34417 1.18987 0.88701 0.81511 0.75945 1.53134 1.70971 1.27419 1.29360 1.01273 0.72847 0.74338 0.71476 1.93451 1.67268 1.53322 1.82431 1.93415 1.32413 1.86909 1.85729 1.30367 1.58590 1.19065 1.09426 0.88313 1.25533 0.88633 0.97229 1.00828 1.69877 1.33324 1.21979 1.24507 0.85447 0.80053 0.78611 0.77137 1.18583 1.17367 1.17809 0.85906 0.85509 0.89021 0.69354 0.69111 0.88255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 10.04 127.77 1.28 1.98 15 2 N -0.51 -16.14 2.71 -677.24 -1.84 -17.98 15 3 C 0.67 23.20 8.29 179.68 1.49 24.68 15 4 O -0.53 -20.29 16.46 -4.67 -0.08 -20.37 15 5 N -0.62 -19.61 10.34 -434.04 -4.49 -24.10 15 6 C 0.53 15.73 8.17 87.08 0.71 16.44 15 7 O -0.41 -9.19 13.45 -81.76 -1.10 -10.29 15 8 C -0.25 -8.59 6.92 42.55 0.29 -8.30 15 9 N -0.30 -11.10 11.50 -47.59 -0.55 -11.64 15 10 O 0.10 3.68 15.60 11.22 0.17 3.86 15 11 C 0.58 19.12 4.98 134.13 0.67 19.79 15 12 N -1.05 -34.36 2.53 -53.66 -0.14 -34.49 15 13 S 2.70 123.54 5.25 -56.49 -0.30 123.24 15 14 O -0.98 -50.46 16.54 -120.85 -2.00 -52.46 15 15 O -1.00 -48.69 18.02 -128.00 -2.31 -50.99 15 16 C -1.04 -51.33 8.96 67.73 0.61 -50.73 15 17 H 0.10 4.59 6.57 -2.91 -0.02 4.57 15 18 C 0.10 4.81 5.46 84.65 0.46 5.27 15 19 N -0.87 -46.25 13.19 21.45 0.28 -45.97 15 20 Si 0.97 39.05 29.54 68.60 2.03 41.08 15 21 H -0.26 -10.45 7.11 99.48 0.71 -9.74 15 22 H -0.25 -9.25 7.11 99.48 0.71 -8.54 15 23 H -0.25 -9.88 7.11 99.48 0.71 -9.18 15 24 H 0.12 2.67 7.53 -2.39 -0.02 2.66 15 25 H 0.13 3.01 7.13 -2.39 -0.02 2.99 15 26 H 0.09 2.81 8.14 -2.39 -0.02 2.79 15 27 H 0.44 4.89 8.99 -74.06 -0.67 4.23 15 28 H 0.46 10.81 8.94 -96.74 -0.87 9.94 15 29 H 0.31 14.69 8.31 -92.71 -0.77 13.92 15 Total: -1.00 -72.28 284.88 -5.04 -77.32 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -0.25 Total: 13.65 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: 5.52 Total: 9.15 kcal Atomic # 7 Polarization: -127.45 SS G_CDS: -6.72 Total: -134.18 kcal Atomic # 8 Polarization: -124.96 SS G_CDS: -5.31 Total: -130.26 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Atomic # 16 Polarization: 123.54 SS G_CDS: -0.30 Total: 123.24 kcal Total: -72.28 -5.04 -77.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192987708.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.175 kcal (2) G-P(sol) polarization free energy of solvation -72.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds