Wall clock time and date at job start Tue Mar 31 2020 03:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36926 * 120.00321 * 2 1 4 4 H 1.08007 * 119.99896 * 147.71070 * 3 2 1 5 5 C 1.38954 * 119.99878 * 327.99018 * 3 2 1 6 6 N 1.31442 * 119.99772 * 166.86396 * 5 3 2 7 7 Si 1.86790 * 120.00114 * 346.86139 * 5 3 2 8 8 H 1.48510 * 109.47035 * 87.37705 * 7 5 3 9 9 H 1.48497 * 109.47216 * 207.37269 * 7 5 3 10 10 H 1.48505 * 109.47303 * 327.37606 * 7 5 3 11 11 C 1.34783 * 119.99538 * 180.02562 * 2 1 3 12 12 O 1.21841 * 119.99643 * 184.11611 * 11 2 1 13 13 C 1.41384 * 120.00088 * 4.12458 * 11 2 1 14 14 S 1.75809 * 125.49321 * 6.40374 * 13 11 2 15 15 C 1.70559 * 91.70274 * 180.02562 * 14 13 11 16 16 C 1.33546 * 111.24090 * 0.02562 * 15 14 13 17 17 C 1.37651 * 125.48653 * 186.10769 * 13 11 2 18 18 N 1.39204 * 123.53043 * 359.97438 * 17 13 11 19 19 S 1.65598 * 120.00245 * 215.00313 * 18 17 13 20 20 C 1.81397 * 104.45061 * 64.99886 * 19 18 17 21 21 O 1.42100 * 104.27741 * 181.07616 * 19 18 17 22 22 O 1.42107 * 104.27701 * 308.92726 * 19 18 17 23 23 H 1.09000 * 109.46525 * 354.45655 * 1 2 3 24 24 H 1.08998 * 109.47368 * 114.45667 * 1 2 3 25 25 H 1.08994 * 109.47012 * 234.45754 * 1 2 3 26 26 H 0.96994 * 119.99871 * 180.02562 * 6 5 3 27 27 H 1.08001 * 124.38053 * 180.02562 * 15 14 13 28 28 H 1.07992 * 122.45395 * 180.02562 * 16 15 14 29 29 H 0.97004 * 119.99946 * 35.00620 * 18 17 13 30 30 H 1.09005 * 109.46655 * 60.00421 * 20 19 18 31 31 H 1.08997 * 109.47338 * 180.02562 * 20 19 18 32 32 H 1.09000 * 109.47165 * 300.00326 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1045 1.2580 0.4997 5 6 1.6135 2.2977 -0.6379 6 7 2.1282 3.4885 -0.4264 7 14 0.1612 2.1001 -1.7959 8 1 -1.1035 2.1746 -1.0210 9 1 0.1852 3.1850 -2.8096 10 1 0.2472 0.7836 -2.4777 11 6 2.1389 -1.1673 -0.0005 12 8 3.3549 -1.1687 0.0752 13 6 1.4346 -2.3901 -0.0891 14 16 -0.2942 -2.5548 -0.3632 15 6 -0.1917 -4.2565 -0.3121 16 6 1.0641 -4.6595 -0.1018 17 6 1.9930 -3.6435 0.0196 18 7 3.3505 -3.8646 0.2344 19 16 4.0969 -5.1699 -0.4594 20 6 4.0041 -4.8495 -2.2424 21 8 5.4413 -5.0862 -0.0069 22 8 3.2728 -6.2728 -0.1074 23 1 -0.3632 1.0229 0.0993 24 1 -0.3634 -0.4254 -0.9354 25 1 -0.3633 -0.5974 0.8362 26 1 1.7536 4.2647 -0.8713 27 1 -1.0334 -4.9221 -0.4340 28 1 1.3347 -5.7030 -0.0374 29 1 3.8593 -3.2540 0.7906 30 1 4.5198 -3.9168 -2.4713 31 1 4.4769 -5.6687 -2.7839 32 1 2.9595 -4.7705 -2.5435 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196728919.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:41 Heat of formation + Delta-G solvation = -41.728040 kcal Electronic energy + Delta-G solvation = -21151.683510 eV Core-core repulsion = 17753.763574 eV Total energy + Delta-G solvation = -3397.919937 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 304.038 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.51716 -38.02659 -37.00348 -36.00635 -34.96751 -33.39095 -32.32980 -29.53473 -29.37717 -26.92953 -25.47505 -23.75076 -20.88545 -20.03158 -18.73903 -17.92087 -17.36946 -17.16630 -16.44810 -16.25489 -15.73384 -15.24834 -15.12149 -14.61200 -14.00700 -13.61500 -13.39770 -13.31272 -13.14654 -12.88650 -12.85450 -12.57208 -12.29951 -12.20605 -12.14901 -11.98291 -11.56468 -11.13015 -10.96551 -10.73973 -10.44433 -10.13150 -10.02391 -9.38946 -8.83501 -8.48182 -8.14287 -7.76232 -6.57701 -4.10497 0.15861 0.82985 1.74413 2.19528 2.56370 2.72142 2.87433 3.05614 3.09181 3.73173 3.91771 3.98259 4.17504 4.24635 4.69827 4.86900 4.89355 5.01281 5.39419 5.45811 5.57554 5.62668 5.66242 5.75750 5.99477 6.18432 6.27778 6.57257 7.18462 7.32541 8.04142 8.28920 8.73181 9.07911 9.52203 10.53092 Molecular weight = 304.04amu Principal moments of inertia in cm(-1) A = 0.021808 B = 0.005516 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.637050 B = 5074.989493 C = 5883.777699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.451 5.451 3 C -0.303 4.303 4 H 0.117 0.883 5 C 0.052 3.948 6 N -0.857 5.857 7 Si 0.886 3.114 8 H -0.271 1.271 9 H -0.286 1.286 10 H -0.262 1.262 11 C 0.521 3.479 12 O -0.564 6.564 13 C -0.257 4.257 14 S 0.219 5.781 15 C -0.258 4.258 16 C -0.179 4.179 17 C 0.178 3.822 18 N -1.020 6.020 19 S 2.611 3.389 20 C -0.668 4.668 21 O -0.953 6.953 22 O -0.956 6.956 23 H 0.100 0.900 24 H 0.060 0.940 25 H 0.073 0.927 26 H 0.278 0.722 27 H 0.164 0.836 28 H 0.169 0.831 29 H 0.438 0.562 30 H 0.135 0.865 31 H 0.128 0.872 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.562 -13.895 -3.452 15.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.170 5.170 3 C -0.431 4.431 4 H 0.135 0.865 5 C -0.155 4.155 6 N -0.493 5.493 7 Si 0.713 3.287 8 H -0.198 1.198 9 H -0.212 1.212 10 H -0.186 1.186 11 C 0.312 3.688 12 O -0.449 6.449 13 C -0.382 4.382 14 S 0.485 5.515 15 C -0.396 4.396 16 C -0.212 4.212 17 C 0.065 3.935 18 N -0.772 5.772 19 S 2.704 3.296 20 C -0.819 4.819 21 O -0.944 6.944 22 O -0.946 6.946 23 H 0.118 0.882 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.182 0.818 28 H 0.186 0.814 29 H 0.279 0.721 30 H 0.154 0.846 31 H 0.146 0.854 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.769 -13.541 -3.294 15.493 hybrid contribution 0.189 -0.270 -0.800 0.865 sum -6.580 -13.811 -4.094 15.837 Atomic orbital electron populations 1.22374 0.84063 1.04172 1.01227 1.43654 1.03667 1.06293 1.63418 1.19285 1.06315 0.84208 1.33308 0.86537 1.25429 0.98389 0.94896 0.96789 1.69672 1.41047 0.98318 1.40274 0.86981 0.81661 0.78798 0.81227 1.19764 1.21231 1.18639 1.15418 0.87177 0.81821 0.84362 1.90667 1.12536 1.86217 1.55506 1.23824 0.97744 0.97971 1.18710 1.83747 1.03799 0.97210 1.66727 1.25454 1.01206 1.04065 1.08876 1.20408 0.91947 1.01526 1.07314 1.16549 0.84091 0.91513 1.01354 1.52858 1.14385 1.47868 1.62049 1.04955 0.73551 0.73391 0.77660 1.30464 1.12050 1.12482 1.26881 1.93625 1.35449 1.85836 1.79466 1.93549 1.68479 1.51006 1.81561 0.88193 0.92206 0.90901 0.91118 0.81841 0.81422 0.72126 0.84645 0.85384 0.85223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 6.34 59.85 0.38 0.88 16 2 N -0.45 -10.49 2.74 -125.52 -0.34 -10.83 16 3 C -0.30 -8.17 9.58 -15.01 -0.14 -8.31 16 4 H 0.12 3.54 7.76 -52.48 -0.41 3.13 16 5 C 0.05 1.35 5.32 -17.45 -0.09 1.25 16 6 N -0.86 -23.59 13.96 55.50 0.77 -22.81 16 7 Si 0.89 18.98 24.22 -169.99 -4.12 14.87 16 8 H -0.27 -5.24 6.48 56.52 0.37 -4.87 16 9 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.26 -5.47 6.55 56.52 0.37 -5.10 16 11 C 0.52 11.82 7.41 -15.06 -0.11 11.71 16 12 O -0.56 -14.26 14.72 5.06 0.07 -14.19 16 13 C -0.26 -4.69 6.13 -38.60 -0.24 -4.93 16 14 S 0.22 3.05 17.42 -107.50 -1.87 1.18 16 15 C -0.26 -3.17 10.89 29.09 0.32 -2.86 16 16 C -0.18 -2.51 9.30 -41.24 -0.38 -2.90 16 17 C 0.18 2.92 6.28 -84.74 -0.53 2.39 16 18 N -1.02 -16.19 5.18 31.94 0.17 -16.02 16 19 S 2.61 34.83 5.97 -107.50 -0.64 34.19 16 20 C -0.67 -6.83 10.84 101.05 1.10 -5.74 16 21 O -0.95 -15.62 18.08 -57.54 -1.04 -16.66 16 22 O -0.96 -13.93 15.13 -57.54 -0.87 -14.80 16 23 H 0.10 1.91 4.30 -51.93 -0.22 1.69 16 24 H 0.06 1.02 4.93 -36.93 -0.18 0.84 16 25 H 0.07 1.15 6.57 -45.27 -0.30 0.86 16 26 H 0.28 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.16 1.49 8.06 -52.49 -0.42 1.06 16 28 H 0.17 2.26 5.66 -52.49 -0.30 1.96 16 29 H 0.44 7.46 7.44 -34.47 -0.26 7.21 16 30 H 0.13 1.42 8.14 -51.92 -0.42 1.00 16 31 H 0.13 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.13 1.23 8.14 -51.92 -0.42 0.81 16 LS Contribution 287.10 15.07 4.33 4.33 Total: -1.00 -33.39 287.10 -5.81 -39.20 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -2.56 Total: 10.04 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: 0.29 Total: -8.49 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: 0.60 Total: -49.66 kcal Atomic # 8 Polarization: -43.81 SS G_CDS: -1.84 Total: -45.65 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -4.12 Total: 14.87 kcal Atomic # 16 Polarization: 37.88 SS G_CDS: -2.51 Total: 35.36 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -33.39 -5.81 -39.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196728919.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.527 kcal (2) G-P(sol) polarization free energy of solvation -33.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds