Wall clock time and date at job start Tue Mar 31 2020 03:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36926 * 120.00321 * 2 1 4 4 H 1.08007 * 119.99896 * 147.71070 * 3 2 1 5 5 C 1.38954 * 119.99878 * 327.99018 * 3 2 1 6 6 N 1.31442 * 119.99772 * 166.86396 * 5 3 2 7 7 Si 1.86790 * 120.00114 * 346.86139 * 5 3 2 8 8 H 1.48510 * 109.47035 * 87.37705 * 7 5 3 9 9 H 1.48497 * 109.47216 * 207.37269 * 7 5 3 10 10 H 1.48505 * 109.47303 * 327.37606 * 7 5 3 11 11 C 1.34783 * 119.99538 * 180.02562 * 2 1 3 12 12 O 1.21841 * 119.99643 * 184.11611 * 11 2 1 13 13 C 1.41384 * 120.00088 * 4.12458 * 11 2 1 14 14 S 1.75809 * 125.49321 * 6.40374 * 13 11 2 15 15 C 1.70559 * 91.70274 * 180.02562 * 14 13 11 16 16 C 1.33546 * 111.24090 * 0.02562 * 15 14 13 17 17 C 1.37651 * 125.48653 * 186.10769 * 13 11 2 18 18 N 1.39204 * 123.53043 * 359.97438 * 17 13 11 19 19 S 1.65598 * 120.00245 * 215.00313 * 18 17 13 20 20 C 1.81397 * 104.45061 * 64.99886 * 19 18 17 21 21 O 1.42100 * 104.27741 * 181.07616 * 19 18 17 22 22 O 1.42107 * 104.27701 * 308.92726 * 19 18 17 23 23 H 1.09000 * 109.46525 * 354.45655 * 1 2 3 24 24 H 1.08998 * 109.47368 * 114.45667 * 1 2 3 25 25 H 1.08994 * 109.47012 * 234.45754 * 1 2 3 26 26 H 0.96994 * 119.99871 * 180.02562 * 6 5 3 27 27 H 1.08001 * 124.38053 * 180.02562 * 15 14 13 28 28 H 1.07992 * 122.45395 * 180.02562 * 16 15 14 29 29 H 0.97004 * 119.99946 * 35.00620 * 18 17 13 30 30 H 1.09005 * 109.46655 * 60.00421 * 20 19 18 31 31 H 1.08997 * 109.47338 * 180.02562 * 20 19 18 32 32 H 1.09000 * 109.47165 * 300.00326 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1045 1.2580 0.4997 5 6 1.6135 2.2977 -0.6379 6 7 2.1282 3.4885 -0.4264 7 14 0.1612 2.1001 -1.7959 8 1 -1.1035 2.1746 -1.0210 9 1 0.1852 3.1850 -2.8096 10 1 0.2472 0.7836 -2.4777 11 6 2.1389 -1.1673 -0.0005 12 8 3.3549 -1.1687 0.0752 13 6 1.4346 -2.3901 -0.0891 14 16 -0.2942 -2.5548 -0.3632 15 6 -0.1917 -4.2565 -0.3121 16 6 1.0641 -4.6595 -0.1018 17 6 1.9930 -3.6435 0.0196 18 7 3.3505 -3.8646 0.2344 19 16 4.0969 -5.1699 -0.4594 20 6 4.0041 -4.8495 -2.2424 21 8 5.4413 -5.0862 -0.0069 22 8 3.2728 -6.2728 -0.1074 23 1 -0.3632 1.0229 0.0993 24 1 -0.3634 -0.4254 -0.9354 25 1 -0.3633 -0.5974 0.8362 26 1 1.7536 4.2647 -0.8713 27 1 -1.0334 -4.9221 -0.4340 28 1 1.3347 -5.7030 -0.0374 29 1 3.8593 -3.2540 0.7906 30 1 4.5198 -3.9168 -2.4713 31 1 4.4769 -5.6687 -2.7839 32 1 2.9595 -4.7705 -2.5435 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196728919.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:41 Heat of formation + Delta-G solvation = -70.259202 kcal Electronic energy + Delta-G solvation = -21152.920715 eV Core-core repulsion = 17753.763574 eV Total energy + Delta-G solvation = -3399.157141 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 304.038 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.05406 -39.41114 -38.19414 -37.16931 -36.73791 -34.58670 -34.22675 -30.83906 -30.38312 -28.49690 -27.11829 -25.08041 -22.32911 -21.25650 -19.94200 -19.30702 -19.10192 -18.56617 -17.90333 -17.39457 -17.18470 -16.57222 -16.43764 -16.13709 -15.19346 -15.13696 -14.77878 -14.47534 -14.38757 -14.16814 -14.09552 -13.91391 -13.79728 -13.75893 -13.34208 -13.25916 -12.75890 -12.54255 -12.46433 -12.16128 -11.80187 -11.63540 -11.37426 -11.15858 -10.59919 -9.90355 -9.71835 -8.99969 -8.51247 -6.15496 -0.91168 -0.37545 0.54840 1.07859 1.20232 1.31711 1.41518 1.46185 1.57520 2.16412 2.30701 2.63745 2.69802 3.00907 3.12205 3.75528 3.93137 4.01697 4.08529 4.14905 4.26748 4.34359 4.56975 4.60659 4.84997 5.05709 5.14960 5.34789 5.51146 5.83188 5.99416 6.47187 6.84321 7.18969 7.74364 8.65130 Molecular weight = 304.04amu Principal moments of inertia in cm(-1) A = 0.021808 B = 0.005516 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.637050 B = 5074.989493 C = 5883.777699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.472 5.472 3 C -0.329 4.329 4 H 0.051 0.949 5 C 0.002 3.998 6 N -0.915 5.915 7 Si 0.953 3.047 8 H -0.227 1.227 9 H -0.290 1.290 10 H -0.248 1.248 11 C 0.526 3.474 12 O -0.608 6.608 13 C -0.325 4.325 14 S 0.276 5.724 15 C -0.212 4.212 16 C -0.202 4.202 17 C 0.201 3.799 18 N -1.035 6.035 19 S 2.618 3.382 20 C -0.651 4.651 21 O -0.990 6.990 22 O -0.967 6.967 23 H 0.095 0.905 24 H 0.083 0.917 25 H 0.100 0.900 26 H 0.282 0.718 27 H 0.211 0.789 28 H 0.178 0.822 29 H 0.429 0.571 30 H 0.133 0.867 31 H 0.164 0.836 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.561 -17.124 -5.406 20.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.193 5.193 3 C -0.458 4.458 4 H 0.069 0.931 5 C -0.200 4.200 6 N -0.553 5.553 7 Si 0.774 3.226 8 H -0.151 1.151 9 H -0.218 1.218 10 H -0.172 1.172 11 C 0.319 3.681 12 O -0.496 6.496 13 C -0.450 4.450 14 S 0.543 5.457 15 C -0.350 4.350 16 C -0.234 4.234 17 C 0.086 3.914 18 N -0.783 5.783 19 S 2.715 3.285 20 C -0.805 4.805 21 O -0.981 6.981 22 O -0.957 6.957 23 H 0.113 0.887 24 H 0.101 0.899 25 H 0.118 0.882 26 H 0.092 0.908 27 H 0.228 0.772 28 H 0.195 0.805 29 H 0.267 0.733 30 H 0.152 0.848 31 H 0.182 0.818 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.799 -16.780 -5.191 20.618 hybrid contribution 1.500 0.386 -0.156 1.557 sum -9.299 -16.394 -5.347 19.591 Atomic orbital electron populations 1.22561 0.81062 1.04847 1.03599 1.43614 1.05524 1.04963 1.65171 1.18771 1.05386 0.86766 1.34829 0.93076 1.26305 1.02090 0.93725 0.97847 1.69819 1.43869 0.99430 1.42195 0.85940 0.79083 0.78956 0.78584 1.15144 1.21756 1.17199 1.16071 0.87013 0.83148 0.81845 1.90621 1.14933 1.87405 1.56592 1.23470 1.01264 0.96263 1.24014 1.83356 0.99239 0.97898 1.65248 1.26037 1.01699 1.03882 1.03410 1.20472 0.92128 1.01287 1.09517 1.17003 0.84415 0.91768 0.98248 1.53128 1.14839 1.47765 1.62566 1.04669 0.72336 0.72428 0.79021 1.30311 1.13708 1.13869 1.22564 1.93581 1.37232 1.86108 1.81159 1.93519 1.68278 1.51161 1.82756 0.88652 0.89889 0.88170 0.90842 0.77191 0.80458 0.73310 0.84795 0.81798 0.83544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.81 6.34 127.77 0.81 1.62 16 2 N -0.47 -22.48 2.74 -669.20 -1.83 -24.31 16 3 C -0.33 -19.01 9.58 84.07 0.81 -18.20 16 4 H 0.05 3.49 7.76 -2.91 -0.02 3.47 16 5 C 0.00 0.10 5.32 84.92 0.45 0.55 16 6 N -0.92 -53.50 13.96 21.67 0.30 -53.20 16 7 Si 0.95 38.52 24.22 68.60 1.66 40.18 16 8 H -0.23 -7.61 6.48 99.48 0.64 -6.97 16 9 H -0.29 -11.87 7.11 99.48 0.71 -11.16 16 10 H -0.25 -9.38 6.55 99.48 0.65 -8.73 16 11 C 0.53 24.55 7.41 85.01 0.63 25.18 16 12 O -0.61 -32.82 14.72 -4.80 -0.07 -32.89 16 13 C -0.33 -11.40 6.13 22.91 0.14 -11.26 16 14 S 0.28 6.34 17.42 -56.49 -0.98 5.36 16 15 C -0.21 -3.88 10.89 66.76 0.73 -3.16 16 16 C -0.20 -4.81 9.30 21.20 0.20 -4.61 16 17 C 0.20 6.22 6.28 37.82 0.24 6.45 16 18 N -1.04 -32.81 5.18 -52.86 -0.27 -33.08 16 19 S 2.62 67.13 5.97 -56.49 -0.34 66.79 16 20 C -0.65 -11.37 10.84 113.37 1.23 -10.14 16 21 O -0.99 -32.83 18.08 -127.65 -2.31 -35.14 16 22 O -0.97 -26.23 15.13 -127.65 -1.93 -28.16 16 23 H 0.10 3.41 4.30 -2.39 -0.01 3.40 16 24 H 0.08 2.48 4.93 -11.92 -0.06 2.42 16 25 H 0.10 2.87 6.57 -6.63 -0.04 2.83 16 26 H 0.28 15.03 8.31 -92.71 -0.77 14.26 16 27 H 0.21 2.01 8.06 -2.91 -0.02 1.99 16 28 H 0.18 4.01 5.66 -2.91 -0.02 4.00 16 29 H 0.43 15.43 7.44 -96.74 -0.72 14.71 16 30 H 0.13 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.16 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.15 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -81.12 287.10 -0.26 -81.38 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: 0.28 Total: 26.64 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: 5.23 Total: -13.57 kcal Atomic # 7 Polarization: -108.79 SS G_CDS: -1.80 Total: -110.59 kcal Atomic # 8 Polarization: -91.87 SS G_CDS: -4.31 Total: -96.18 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 1.66 Total: 40.18 kcal Atomic # 16 Polarization: 73.47 SS G_CDS: -1.32 Total: 72.15 kcal Total: -81.12 -0.26 -81.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196728919.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.122 kcal (2) G-P(sol) polarization free energy of solvation -81.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds