Wall clock time and date at job start Tue Mar 31 2020 03:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 110.46710 * 2 1 4 4 O 1.45707 * 110.51657 * 122.77247 * 2 1 3 5 5 C 1.33775 * 109.47194 * 118.63468 * 4 2 1 6 6 O 1.21513 * 123.06793 * 179.97438 * 5 4 2 7 7 N 1.33998 * 113.85774 * 359.97438 * 5 4 2 8 8 C 1.47093 * 108.88190 * 0.02562 * 7 5 4 9 9 H 1.09004 * 110.68984 * 241.36360 * 8 7 5 10 10 C 1.50699 * 110.56306 * 118.57735 * 8 7 5 11 11 O 1.21276 * 120.00244 * 345.64003 * 10 8 7 12 12 N 1.34786 * 119.99781 * 165.64511 * 10 8 7 13 13 C 1.46494 * 119.99850 * 179.97438 * 12 10 8 14 14 C 1.50694 * 109.47253 * 179.97438 * 13 12 10 15 15 C 1.38635 * 119.75260 * 269.72775 * 14 13 12 16 16 C 1.37618 * 120.25241 * 179.76055 * 15 14 13 17 17 C 1.40710 * 119.74511 * 0.48830 * 16 15 14 18 18 C 1.41389 * 120.24820 * 179.78889 * 17 16 15 19 19 H 1.08003 * 119.99891 * 24.36818 * 18 17 16 20 20 C 1.39945 * 120.00186 * 204.36956 * 18 17 16 21 21 N 1.30820 * 120.00451 * 17.86975 * 20 18 17 22 22 Si 1.86804 * 120.00117 * 197.87035 * 20 18 17 23 23 H 1.48500 * 109.47054 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46966 * 119.99725 * 22 20 18 25 25 H 1.48493 * 109.47307 * 239.99977 * 22 20 18 26 26 C 1.40718 * 119.51024 * 359.76535 * 17 16 15 27 27 C 1.37624 * 119.74629 * 0.02562 * 26 17 16 28 28 H 1.09005 * 109.47082 * 182.63256 * 1 2 3 29 29 H 1.09000 * 109.46593 * 62.63935 * 1 2 3 30 30 H 1.08997 * 109.47691 * 302.63841 * 1 2 3 31 31 H 0.96999 * 125.55653 * 180.02562 * 7 5 4 32 32 H 0.96993 * 119.99903 * 359.97438 * 12 10 8 33 33 H 1.09000 * 109.47656 * 299.99919 * 13 12 10 34 34 H 1.08998 * 109.47325 * 59.99931 * 13 12 10 35 35 H 1.08007 * 119.87492 * 359.97438 * 15 14 13 36 36 H 1.08002 * 120.12884 * 180.22755 * 16 15 14 37 37 H 0.96996 * 120.00697 * 180.02562 * 21 20 18 38 38 H 1.07994 * 120.12977 * 179.97438 * 26 17 16 39 39 H 1.07998 * 119.87675 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9111 1.0212 0.0000 4 8 2.0407 -0.7387 1.1474 5 6 2.7630 -1.7809 0.7213 6 8 3.3056 -2.5642 1.4753 7 7 2.8337 -1.8820 -0.6130 8 6 2.0699 -0.7785 -1.2151 9 1 1.2481 -1.1633 -1.8190 10 6 2.9713 0.0969 -2.0471 11 8 4.1756 0.0035 -1.9391 12 7 2.4390 0.9838 -2.9113 13 6 3.3152 1.8352 -3.7197 14 6 2.4772 2.7294 -4.5965 15 6 2.1130 2.3040 -5.8647 16 6 1.3438 3.1103 -6.6723 17 6 0.9355 4.3751 -6.2102 18 6 0.1488 5.2140 -7.0327 19 1 -0.4625 4.7855 -7.8132 20 6 0.1623 6.5994 -6.8355 21 7 1.1321 7.1538 -6.1547 22 14 -1.2046 7.6571 -7.5443 23 1 -2.1742 6.7945 -8.2662 24 1 -1.9009 8.3694 -6.4430 25 1 -0.6256 8.6480 -8.4867 26 6 1.3155 4.7987 -4.9232 27 6 2.0814 3.9740 -4.1313 28 1 -0.3633 -1.0266 0.0472 29 1 -0.3632 0.4723 -0.9127 30 1 -0.3634 0.5542 0.8653 31 1 3.3106 -2.5707 -1.1020 32 1 1.4758 1.0583 -2.9979 33 1 3.9346 2.4464 -3.0632 34 1 3.9541 1.2103 -4.3438 35 1 2.4313 1.3346 -6.2190 36 1 1.0582 2.7753 -7.6585 37 1 1.1413 8.1140 -6.0177 38 1 1.0080 5.7677 -4.5587 39 1 2.3739 4.2968 -3.1431 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496722708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:23 Heat of formation + Delta-G solvation = -96.526190 kcal Electronic energy + Delta-G solvation = -23847.314174 eV Core-core repulsion = 20140.487378 eV Total energy + Delta-G solvation = -3706.826796 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.10110 -39.48532 -37.83085 -37.42924 -35.11139 -34.79050 -33.64702 -32.36378 -30.55447 -29.49126 -28.04356 -26.42959 -23.92579 -23.11898 -22.52343 -21.20994 -20.76066 -20.27088 -18.44675 -17.73390 -17.50355 -17.32830 -16.19259 -15.85531 -15.44427 -15.21896 -14.90151 -14.79763 -14.38445 -13.98657 -13.89641 -13.70625 -13.50546 -13.21191 -12.67248 -12.53414 -12.26132 -12.15786 -11.94195 -11.70386 -11.33902 -11.20957 -11.08160 -10.91261 -10.74066 -10.66273 -10.45191 -9.84027 -9.61626 -9.49325 -9.32011 -8.96928 -7.69900 -7.57992 -6.97427 -4.57487 2.23998 2.30723 2.45375 2.53871 2.85663 2.89652 2.95966 3.00554 3.09433 3.44164 3.72159 3.77160 4.19177 4.31615 4.46151 4.55530 4.81963 4.91489 5.24458 5.33553 5.46993 5.61613 5.65027 5.73277 6.09414 6.11878 6.21102 6.49004 6.50638 6.75438 6.87231 6.96609 7.05711 7.14438 7.39191 7.44548 7.66669 7.84364 7.84804 7.88276 8.07137 8.10656 8.42773 8.67834 8.74819 9.96362 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.028590 B = 0.002689 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.113990 B =10409.448358 C =10857.881733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.081 3.919 3 H 0.121 0.879 4 O -0.321 6.321 5 C 0.651 3.349 6 O -0.523 6.523 7 N -0.709 5.709 8 C 0.077 3.923 9 H 0.127 0.873 10 C 0.494 3.506 11 O -0.530 6.530 12 N -0.708 5.708 13 C 0.184 3.816 14 C -0.251 4.251 15 C -0.068 4.068 16 C -0.230 4.230 17 C 0.117 3.883 18 C -0.456 4.456 19 H 0.080 0.920 20 C 0.075 3.925 21 N -0.784 5.784 22 Si 0.909 3.091 23 H -0.259 1.259 24 H -0.270 1.270 25 H -0.273 1.273 26 C -0.170 4.170 27 C -0.080 4.080 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.439 0.561 32 H 0.402 0.598 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.283 0.717 38 H 0.119 0.881 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.312 -8.689 6.006 11.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.024 3.976 3 H 0.139 0.861 4 O -0.231 6.231 5 C 0.404 3.596 6 O -0.407 6.407 7 N -0.381 5.381 8 C -0.033 4.033 9 H 0.144 0.856 10 C 0.276 3.724 11 O -0.406 6.406 12 N -0.359 5.359 13 C 0.063 3.937 14 C -0.253 4.253 15 C -0.087 4.087 16 C -0.250 4.250 17 C 0.114 3.886 18 C -0.485 4.485 19 H 0.098 0.902 20 C -0.144 4.144 21 N -0.409 5.409 22 Si 0.733 3.267 23 H -0.183 1.183 24 H -0.195 1.195 25 H -0.198 1.198 26 C -0.189 4.189 27 C -0.099 4.099 28 H 0.090 0.910 29 H 0.109 0.891 30 H 0.101 0.899 31 H 0.283 0.717 32 H 0.237 0.763 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.094 0.906 38 H 0.136 0.864 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.181 -8.716 6.882 11.552 hybrid contribution -0.710 0.470 -0.921 1.255 sum -3.892 -8.246 5.961 10.894 Atomic orbital electron populations 1.22184 0.90766 1.04223 1.04825 1.23825 0.96897 0.96635 0.80210 0.86112 1.87328 1.63995 1.39004 1.32786 1.18422 0.78072 0.80659 0.82457 1.91079 1.49095 1.42566 1.57985 1.45638 1.56264 1.30265 1.05970 1.22487 0.95327 0.89061 0.96455 0.85553 1.20514 0.89161 0.81558 0.81125 1.90754 1.14620 1.68351 1.66896 1.46580 1.11312 1.37898 1.40099 1.20019 0.91048 0.90878 0.91790 1.18912 1.12382 0.97220 0.96797 1.20399 0.97405 0.97296 0.93563 1.20965 1.06726 0.97991 0.99288 1.17686 0.88632 0.90909 0.91324 1.19714 1.22858 0.90943 1.14949 0.90161 1.25972 0.95557 0.99027 0.93838 1.69817 1.27194 1.13046 1.30797 0.86243 0.81286 0.79654 0.79523 1.18273 1.19544 1.19838 1.21322 1.03106 1.00247 0.94261 1.20551 0.98021 0.93530 0.97777 0.90973 0.89066 0.89929 0.71709 0.76300 0.92028 0.92112 0.89399 0.88866 0.90597 0.86353 0.89373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 9.45 37.16 0.35 -0.56 16 2 C 0.08 0.69 4.14 -26.17 -0.11 0.58 16 3 H 0.12 1.02 7.72 -51.93 -0.40 0.62 16 4 O -0.32 -3.97 10.80 -37.84 -0.41 -4.37 16 5 C 0.65 8.96 9.16 53.71 0.49 9.45 16 6 O -0.52 -9.08 18.04 -19.12 -0.34 -9.42 16 7 N -0.71 -7.56 5.63 -59.36 -0.33 -7.89 16 8 C 0.08 0.68 3.82 -68.20 -0.26 0.42 16 9 H 0.13 0.69 7.73 -51.93 -0.40 0.29 16 10 C 0.49 6.07 6.96 -10.98 -0.08 5.99 16 11 O -0.53 -8.82 16.56 5.56 0.09 -8.73 16 12 N -0.71 -8.56 5.55 -61.48 -0.34 -8.90 16 13 C 0.18 2.85 5.79 -5.20 -0.03 2.82 16 14 C -0.25 -4.60 5.27 -104.33 -0.55 -5.15 16 15 C -0.07 -1.30 9.67 -39.66 -0.38 -1.69 16 16 C -0.23 -5.02 9.80 -38.87 -0.38 -5.40 16 17 C 0.12 2.81 5.57 -106.83 -0.60 2.22 16 18 C -0.46 -11.04 9.05 -37.74 -0.34 -11.38 16 19 H 0.08 1.87 7.91 -52.48 -0.42 1.46 16 20 C 0.08 1.74 5.14 -17.34 -0.09 1.65 16 21 N -0.78 -18.73 10.95 55.55 0.61 -18.12 16 22 Si 0.91 17.13 29.60 -169.99 -5.03 12.10 16 23 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 24 H -0.27 -5.02 7.11 56.52 0.40 -4.61 16 25 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 26 C -0.17 -3.93 8.70 -38.87 -0.34 -4.27 16 27 C -0.08 -1.60 9.67 -39.66 -0.38 -1.99 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.44 4.08 8.96 -40.82 -0.37 3.72 16 32 H 0.40 4.03 8.46 -40.82 -0.35 3.69 16 33 H 0.06 1.00 8.08 -51.93 -0.42 0.58 16 34 H 0.06 0.97 8.08 -51.93 -0.42 0.55 16 35 H 0.09 1.49 8.06 -52.48 -0.42 1.07 16 36 H 0.09 1.93 8.06 -52.49 -0.42 1.51 16 37 H 0.28 6.12 8.30 -40.82 -0.34 5.78 16 38 H 0.12 2.87 6.15 -52.49 -0.32 2.54 16 39 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 340.63 15.07 5.13 5.13 Total: -1.00 -30.28 340.63 -8.08 -38.36 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -4.76 Total: 9.14 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -2.69 Total: -7.30 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: -0.07 Total: -34.91 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.66 Total: -22.52 kcal Atomic # 14 Polarization: 17.13 SS G_CDS: -5.03 Total: 12.10 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.28 -8.08 -38.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496722708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.168 kcal (2) G-P(sol) polarization free energy of solvation -30.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds