Wall clock time and date at job start Tue Mar 31 2020 04:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47161 * 2 1 4 4 C 1.34780 * 119.99649 * 269.71885 * 3 2 1 5 5 O 1.21280 * 119.99690 * 179.97438 * 4 3 2 6 6 C 1.50703 * 120.00077 * 0.02562 * 4 3 2 7 7 N 1.46500 * 109.47082 * 179.97438 * 6 4 3 8 8 C 1.46501 * 120.00405 * 89.99349 * 7 6 4 9 9 C 1.36941 * 119.99500 * 269.99632 * 7 6 4 10 10 H 1.08002 * 119.99945 * 23.04115 * 9 7 6 11 11 C 1.38813 * 119.99811 * 203.04257 * 9 7 6 12 12 N 1.31619 * 119.99989 * 12.95474 * 11 9 7 13 13 Si 1.86798 * 119.99907 * 192.95878 * 11 9 7 14 14 H 1.48499 * 109.47505 * 59.99904 * 13 11 9 15 15 H 1.48497 * 109.46935 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.46984 * 299.99752 * 13 11 9 17 17 C 1.46497 * 120.00058 * 89.99938 * 3 2 1 18 18 H 1.08997 * 110.01694 * 359.29643 * 17 3 2 19 19 C 1.53879 * 110.02435 * 237.91766 * 17 3 2 20 20 C 1.54198 * 108.68903 * 193.57484 * 19 17 3 21 21 S 1.82913 * 105.11086 * 27.83567 * 20 19 17 22 22 O 1.42097 * 109.35196 * 244.51672 * 21 20 19 23 23 O 1.42100 * 109.35284 * 111.31345 * 21 20 19 24 24 C 1.55048 * 110.02877 * 120.68195 * 17 3 2 25 25 H 1.09001 * 109.47452 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47482 * 300.00548 * 1 2 3 27 27 H 1.09002 * 109.46767 * 60.00383 * 1 2 3 28 28 H 1.09004 * 109.47482 * 239.99452 * 2 1 3 29 29 H 1.09002 * 109.46767 * 119.99616 * 2 1 3 30 30 H 1.09006 * 109.46659 * 299.99398 * 6 4 3 31 31 H 1.08990 * 109.47175 * 59.99223 * 6 4 3 32 32 H 1.08999 * 109.46845 * 95.11981 * 8 7 6 33 33 H 1.09001 * 109.47008 * 215.12225 * 8 7 6 34 34 H 1.09000 * 109.46884 * 335.12586 * 8 7 6 35 35 H 0.96999 * 119.99680 * 180.02562 * 12 11 9 36 36 H 1.09002 * 109.64948 * 313.38108 * 19 17 3 37 37 H 1.09002 * 109.64487 * 73.67754 * 19 17 3 38 38 H 1.09004 * 110.27243 * 268.93817 * 20 19 17 39 39 H 1.09000 * 110.42445 * 146.80919 * 20 19 17 40 40 H 1.09001 * 110.78569 * 279.98865 * 24 17 3 41 41 H 1.08995 * 110.79207 * 43.44801 * 24 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2483 2.0146 -1.1673 5 8 2.6521 3.1582 -1.1673 6 6 2.0026 1.3022 -2.4723 7 7 2.3246 2.1980 -3.5859 8 6 3.6818 2.2232 -4.1370 9 6 1.3569 3.0119 -4.1116 10 1 0.4975 3.2832 -3.5163 11 6 1.4806 3.4883 -5.4095 12 7 2.3776 2.9668 -6.2193 13 14 0.3739 4.8696 -6.0069 14 1 0.5835 6.0725 -5.1618 15 1 0.7040 5.1931 -7.4181 16 1 -1.0451 4.4415 -5.9155 17 6 2.2624 2.0718 1.2687 18 1 2.0171 1.4158 2.1038 19 6 1.4170 3.3555 1.3410 20 6 1.9373 4.2249 2.5035 21 16 3.7064 3.7907 2.6690 22 8 3.9245 3.1770 3.9319 23 8 4.5024 4.8985 2.2711 24 6 3.7467 2.5115 1.3569 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 2.6328 0.4144 -2.5258 31 1 0.9549 1.0082 -2.5342 32 1 3.7361 1.5588 -4.9993 33 1 3.9302 3.2390 -4.4447 34 1 4.3887 1.8906 -3.3769 35 1 2.4642 3.3000 -7.1261 36 1 1.5055 3.9059 0.4044 37 1 0.3724 3.0971 1.5147 38 1 1.4014 3.9868 3.4224 39 1 1.8279 5.2830 2.2656 40 1 4.3809 1.6753 1.6512 41 1 4.0808 2.9377 0.4111 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972794.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:20:12 Heat of formation + Delta-G solvation = -65.946502 kcal Electronic energy + Delta-G solvation = -24406.013158 eV Core-core repulsion = 20835.956347 eV Total energy + Delta-G solvation = -3570.056810 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.99100 -37.10121 -36.55068 -36.04517 -35.09253 -34.64414 -31.28578 -30.61663 -29.23428 -27.31550 -25.85113 -24.99244 -23.35840 -22.24127 -21.08869 -18.92410 -18.60609 -17.28351 -17.00096 -16.66051 -16.24496 -15.59214 -15.45226 -14.85383 -14.68768 -14.50398 -13.98565 -13.77849 -13.64233 -13.42863 -13.24533 -12.76566 -12.56090 -12.36396 -12.22753 -12.08390 -12.02807 -11.92048 -11.63019 -11.36957 -11.27650 -11.09512 -10.84567 -10.77907 -10.70256 -10.45490 -10.37789 -10.03791 -9.91961 -9.15573 -8.55725 -8.53173 -6.81246 -5.75704 -3.22060 -0.02766 2.40879 3.08145 3.20036 3.39008 3.44525 3.47232 3.52770 3.93083 4.33016 4.43063 4.50212 4.56716 4.70750 4.76217 4.88999 5.14047 5.19062 5.29590 5.37395 5.46045 5.50655 5.55774 5.58734 5.70972 5.80465 5.84042 6.03572 6.09213 6.10377 6.27806 6.70590 6.72963 7.37831 7.63792 7.69561 7.78988 8.32896 8.75193 9.18187 9.79563 10.26582 11.29354 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.017435 B = 0.004514 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.591114 B = 6200.823006 C = 6792.408811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.107 3.893 3 N -0.615 5.615 4 C 0.480 3.520 5 O -0.514 6.514 6 C 0.137 3.863 7 N -0.574 5.574 8 C 0.164 3.836 9 C -0.253 4.253 10 H 0.065 0.935 11 C 0.006 3.994 12 N -0.906 5.906 13 Si 0.906 3.094 14 H -0.283 1.283 15 H -0.290 1.290 16 H -0.283 1.283 17 C 0.156 3.844 18 H 0.102 0.898 19 C -0.136 4.136 20 C -0.585 4.585 21 S 2.390 3.610 22 O -0.945 6.945 23 O -0.936 6.936 24 C -0.604 4.604 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.035 0.965 33 H 0.043 0.957 34 H -0.004 1.004 35 H 0.254 0.746 36 H 0.112 0.888 37 H 0.089 0.911 38 H 0.133 0.867 39 H 0.138 0.862 40 H 0.134 0.866 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.554 -6.882 16.746 18.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.016 4.016 3 N -0.352 5.352 4 C 0.267 3.733 5 O -0.387 6.387 6 C 0.004 3.996 7 N -0.293 5.293 8 C 0.020 3.980 9 C -0.382 4.382 10 H 0.083 0.917 11 C -0.192 4.192 12 N -0.550 5.550 13 Si 0.736 3.264 14 H -0.210 1.210 15 H -0.216 1.216 16 H -0.209 1.209 17 C 0.049 3.951 18 H 0.120 0.880 19 C -0.175 4.175 20 C -0.715 4.715 21 S 2.573 3.427 22 O -0.942 6.942 23 O -0.933 6.933 24 C -0.735 4.735 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.015 0.985 35 H 0.064 0.936 36 H 0.131 0.869 37 H 0.107 0.893 38 H 0.151 0.849 39 H 0.157 0.843 40 H 0.153 0.847 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.548 -5.836 17.061 18.098 hybrid contribution -1.223 0.490 -0.715 1.499 sum -2.771 -5.347 16.346 17.420 Atomic orbital electron populations 1.22259 0.96006 1.02190 1.02830 1.21576 0.94447 0.82297 1.03270 1.48438 1.68022 1.14222 1.04539 1.23708 0.75709 0.87969 0.85915 1.90565 1.43478 1.17930 1.86758 1.20750 1.00787 0.92531 0.85550 1.43587 1.07985 1.44315 1.33428 1.20835 0.82352 1.00905 0.93928 1.19040 1.01848 1.22699 0.94622 0.91747 1.24963 0.98760 0.99914 0.95561 1.70055 1.36826 1.42028 1.06083 0.86312 0.80026 0.82482 0.77561 1.20993 1.21552 1.20919 1.21473 0.89789 0.94593 0.89222 0.87977 1.22399 1.01027 0.95049 0.99065 1.30382 1.23783 1.10132 1.07204 1.08933 0.79097 0.77697 0.76954 1.93596 1.84748 1.77347 1.38557 1.93624 1.65964 1.50145 1.83537 1.31073 1.04625 1.17530 1.20229 0.91612 0.92663 0.91636 0.89634 0.90795 0.91478 0.90233 0.94660 0.93781 0.98526 0.93599 0.86935 0.89268 0.84899 0.84325 0.84739 0.82391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 10.24 37.15 0.38 -1.10 16 2 C 0.11 0.97 5.91 -4.04 -0.02 0.95 16 3 N -0.61 -7.69 2.48 -164.36 -0.41 -8.10 16 4 C 0.48 8.39 7.08 -10.98 -0.08 8.32 16 5 O -0.51 -10.92 12.55 5.56 0.07 -10.85 16 6 C 0.14 2.57 4.67 -5.19 -0.02 2.54 16 7 N -0.57 -14.21 2.41 -182.50 -0.44 -14.65 16 8 C 0.16 4.09 8.98 59.85 0.54 4.62 16 9 C -0.25 -6.91 9.65 -15.06 -0.15 -7.05 16 10 H 0.06 1.74 7.86 -52.49 -0.41 1.33 16 11 C 0.01 0.18 5.10 -17.43 -0.09 0.09 16 12 N -0.91 -26.18 10.71 55.49 0.59 -25.59 16 13 Si 0.91 22.03 29.57 -169.99 -5.03 17.00 16 14 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 15 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 C 0.16 1.69 3.02 -66.39 -0.20 1.48 16 18 H 0.10 0.76 7.83 -51.93 -0.41 0.36 16 19 C -0.14 -1.52 5.75 -25.65 -0.15 -1.66 16 20 C -0.58 -5.40 7.26 37.78 0.27 -5.12 16 21 S 2.39 27.68 6.11 -107.50 -0.66 27.02 16 22 O -0.95 -12.70 18.15 -57.71 -1.05 -13.75 16 23 O -0.94 -14.96 18.15 -57.71 -1.05 -16.01 16 24 C -0.60 -6.95 6.62 38.24 0.25 -6.70 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.69 7.25 -51.93 -0.38 0.31 16 28 H 0.09 0.76 6.43 -51.93 -0.33 0.43 16 29 H 0.07 0.50 7.94 -51.93 -0.41 0.08 16 30 H 0.07 1.10 7.33 -51.93 -0.38 0.72 16 31 H 0.08 1.40 7.12 -51.93 -0.37 1.03 16 32 H 0.04 0.92 7.34 -51.93 -0.38 0.54 16 33 H 0.04 1.21 7.34 -51.93 -0.38 0.83 16 34 H 0.00 -0.09 8.03 -51.93 -0.42 -0.50 16 35 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.11 1.67 5.85 -51.93 -0.30 1.36 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.13 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.14 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.13 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.16 2.32 6.06 -51.93 -0.31 2.00 16 LS Contribution 339.27 15.07 5.11 5.11 Total: -1.00 -36.84 339.27 -8.27 -45.12 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -6.16 Total: -1.68 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 0.74 Total: -3.63 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: -0.25 Total: -48.33 kcal Atomic # 8 Polarization: -38.59 SS G_CDS: -2.02 Total: -40.61 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.00 kcal Atomic # 16 Polarization: 27.68 SS G_CDS: -0.66 Total: 27.02 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -36.84 -8.27 -45.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972794.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.829 kcal (2) G-P(sol) polarization free energy of solvation -36.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds