Wall clock time and date at job start Tue Mar 31 2020 03:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00522 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 N 1.46495 * 109.47194 * 120.00052 * 2 1 3 13 13 C 1.34776 * 120.00388 * 275.00617 * 12 2 1 14 14 O 1.21281 * 119.99842 * 359.97438 * 13 12 2 15 15 C 1.50698 * 120.00287 * 180.02562 * 13 12 2 16 16 N 1.46899 * 109.47413 * 179.97438 * 15 13 12 17 17 C 1.46897 * 111.00249 * 293.95600 * 16 15 13 18 18 C 1.38552 * 110.99914 * 169.99777 * 16 15 13 19 19 N 1.33049 * 120.74832 * 359.72109 * 18 16 15 20 20 C 1.32062 * 121.10361 * 179.82221 * 19 18 16 21 21 N 1.31467 * 122.53286 * 0.43963 * 20 19 18 22 22 C 1.33680 * 120.56430 * 359.79578 * 21 20 19 23 23 N 1.34635 * 134.49921 * 179.97438 * 22 21 20 24 24 C 1.30400 * 109.78133 * 180.02562 * 23 22 21 25 25 N 1.35212 * 110.10851 * 0.02562 * 24 23 22 26 26 H 0.97002 * 126.41101 * 180.02562 * 25 24 23 27 27 C 1.37891 * 107.17147 * 359.97438 * 25 24 23 28 28 H 1.08990 * 109.47127 * 299.99571 * 1 2 3 29 29 H 1.08994 * 109.46846 * 59.99893 * 1 2 3 30 30 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 31 31 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 32 32 H 0.97008 * 120.00075 * 94.99858 * 12 2 1 33 33 H 1.09000 * 109.47224 * 299.99957 * 15 13 12 34 34 H 1.09007 * 109.47091 * 59.99436 * 15 13 12 35 35 H 1.09003 * 109.47148 * 59.99696 * 17 16 15 36 36 H 1.08991 * 109.47423 * 179.97438 * 17 16 15 37 37 H 1.09002 * 109.47220 * 300.00059 * 17 16 15 38 38 H 1.08000 * 118.73159 * 180.26071 * 20 19 18 39 39 H 1.08001 * 124.94600 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1422 -0.8559 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8723 -2.7065 10 1 0.8421 2.1735 -1.4886 11 1 0.9805 1.9990 -3.9033 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8590 1.1585 2.4116 15 6 2.6500 -0.7286 3.5874 16 7 2.6997 0.2153 4.7119 17 6 3.7041 1.2613 4.4772 18 6 2.9412 -0.4462 5.9051 19 7 3.0893 -1.7682 5.9322 20 6 3.3231 -2.4055 7.0650 21 7 3.4142 -1.7841 8.2199 22 6 3.2746 -0.4565 8.2905 23 7 3.3122 0.4445 9.2902 24 6 3.1106 1.6414 8.8134 25 7 2.9299 1.5841 7.4746 26 1 2.7630 2.3349 6.8835 27 6 3.0285 0.2588 7.1069 28 1 -0.3633 0.5137 0.8899 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 1.9111 -0.5221 -4.4375 32 1 2.2491 -1.6318 1.1526 33 1 1.9778 -1.5510 3.8324 34 1 3.6494 -1.1204 3.3978 35 1 3.4512 1.8108 3.5705 36 1 3.7198 1.9466 5.3245 37 1 4.6862 0.8027 4.3621 38 1 3.4412 -3.4788 7.0420 39 1 3.0908 2.5466 9.4021 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299566821.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:25 Heat of formation + Delta-G solvation = 96.473574 kcal Electronic energy + Delta-G solvation = -24394.802899 eV Core-core repulsion = 20760.930703 eV Total energy + Delta-G solvation = -3633.872196 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.139 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.01453 -40.13195 -39.16207 -37.40012 -35.04857 -33.46965 -32.49382 -32.21721 -30.77338 -30.10257 -28.09459 -26.20923 -25.23009 -24.08304 -23.55194 -21.87584 -21.00586 -19.77367 -19.24109 -18.27264 -17.52782 -17.15859 -16.46191 -16.14806 -15.76789 -15.50122 -15.40942 -14.82177 -14.60479 -14.28573 -14.21369 -13.83913 -13.51677 -13.06966 -12.90624 -12.29925 -12.24442 -12.08234 -11.87999 -11.75164 -11.70258 -11.20946 -10.87281 -10.82026 -10.24827 -10.10605 -9.75108 -9.57733 -9.35572 -9.29686 -9.19560 -8.81882 -8.50094 -8.24013 -6.26253 -4.29354 0.38875 0.88729 2.28168 2.35120 2.92795 3.07032 3.19031 3.30801 3.32634 3.34036 3.63290 3.79683 4.03682 4.21215 4.26172 4.34965 4.54364 4.86626 4.98170 5.08341 5.12857 5.22876 5.28603 5.41031 5.45593 5.69694 5.91997 6.09026 6.25001 6.32053 6.50251 6.59838 6.68743 6.78741 6.85894 7.12314 7.19999 7.27807 7.44283 7.99335 8.06675 8.43856 8.69082 8.81637 9.34057 10.85884 Molecular weight = 304.14amu Principal moments of inertia in cm(-1) A = 0.032791 B = 0.003016 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.677762 B = 9280.962541 C = 9795.169670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.239 3.761 3 H 0.048 0.952 4 C -0.537 4.537 5 H 0.081 0.919 6 C 0.079 3.921 7 N -0.891 5.891 8 Si 0.886 3.114 9 H -0.276 1.276 10 H -0.262 1.262 11 H -0.294 1.294 12 N -0.697 5.697 13 C 0.504 3.496 14 O -0.547 6.547 15 C 0.043 3.957 16 N -0.456 5.456 17 C 0.022 3.978 18 C 0.403 3.597 19 N -0.554 5.554 20 C 0.328 3.672 21 N -0.508 5.508 22 C 0.305 3.695 23 N -0.493 5.493 24 C 0.298 3.702 25 N -0.570 5.570 26 H 0.432 0.568 27 C -0.082 4.082 28 H 0.036 0.964 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.268 0.732 32 H 0.397 0.603 33 H 0.119 0.881 34 H 0.084 0.916 35 H 0.116 0.884 36 H 0.062 0.938 37 H 0.044 0.956 38 H 0.206 0.794 39 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.794 3.819 20.929 21.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.135 3.865 3 H 0.066 0.934 4 C -0.575 4.575 5 H 0.099 0.901 6 C -0.125 4.125 7 N -0.528 5.528 8 Si 0.716 3.284 9 H -0.203 1.203 10 H -0.187 1.187 11 H -0.221 1.221 12 N -0.346 5.346 13 C 0.288 3.712 14 O -0.426 6.426 15 C -0.086 4.086 16 N -0.172 5.172 17 C -0.124 4.124 18 C 0.153 3.847 19 N -0.277 5.277 20 C 0.035 3.965 21 N -0.226 5.226 22 C 0.056 3.944 23 N -0.216 5.216 24 C 0.008 3.992 25 N -0.183 5.183 26 H 0.273 0.727 27 C -0.200 4.200 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.231 0.769 33 H 0.137 0.863 34 H 0.102 0.898 35 H 0.134 0.866 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.222 0.778 39 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 2.396 3.692 21.626 22.070 hybrid contribution -0.342 1.382 -1.410 2.003 sum 2.054 5.074 20.217 20.944 Atomic orbital electron populations 1.22452 0.99251 1.00950 0.99310 1.19105 0.90162 0.94576 0.82620 0.93388 1.21037 1.33367 1.14554 0.88507 0.90116 1.24833 0.95474 0.96699 0.95522 1.69865 1.44748 1.40123 0.98078 0.86870 0.80585 0.83555 0.77418 1.20290 1.18727 1.22148 1.46153 1.64863 1.14032 1.09526 1.20244 0.78919 0.87592 0.84474 1.90613 1.51128 1.15921 1.84905 1.22028 1.03850 0.94594 0.88151 1.58456 1.44984 1.13289 1.00514 1.22763 0.91424 0.93282 1.04881 1.19321 0.88510 0.88339 0.88556 1.68589 1.20932 1.06493 1.31689 1.24687 0.90368 1.00573 0.80908 1.67685 1.19237 1.06353 1.29349 1.19459 0.97362 0.90369 0.87180 1.70084 1.23828 0.97892 1.29779 1.25637 0.94342 0.98201 0.81062 1.43050 1.58234 1.07244 1.09734 0.72658 1.19968 1.14839 0.86967 0.98191 0.94527 0.93462 0.92743 0.92226 0.76906 0.86295 0.89824 0.86591 0.91956 0.93712 0.77757 0.75420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 8.96 37.16 0.33 -3.17 16 2 C 0.24 5.44 2.15 -69.08 -0.15 5.29 16 3 H 0.05 1.20 6.63 -51.93 -0.34 0.86 16 4 C -0.54 -14.05 9.31 -34.44 -0.32 -14.38 16 5 H 0.08 2.22 7.98 -52.49 -0.42 1.80 16 6 C 0.08 2.15 5.45 -17.82 -0.10 2.05 16 7 N -0.89 -25.91 13.96 55.43 0.77 -25.14 16 8 Si 0.89 21.24 24.37 -169.99 -4.14 17.10 16 9 H -0.28 -6.44 6.88 56.52 0.39 -6.05 16 10 H -0.26 -6.21 6.52 56.52 0.37 -5.84 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 N -0.70 -12.93 5.07 -54.93 -0.28 -13.21 16 13 C 0.50 8.66 7.52 -10.99 -0.08 8.58 16 14 O -0.55 -10.99 13.97 5.56 0.08 -10.92 16 15 C 0.04 0.58 4.73 -4.98 -0.02 0.55 16 16 N -0.46 -5.84 4.53 -182.24 -0.83 -6.66 16 17 C 0.02 0.25 8.98 60.06 0.54 0.79 16 18 C 0.40 5.06 6.41 -154.73 -0.99 4.07 16 19 N -0.55 -6.81 8.78 -13.81 -0.12 -6.93 16 20 C 0.33 3.72 12.24 -92.20 -1.13 2.59 16 21 N -0.51 -6.88 10.50 -14.38 -0.15 -7.04 16 22 C 0.31 4.09 8.42 -157.50 -1.33 2.77 16 23 N -0.49 -5.81 11.23 -13.89 -0.16 -5.97 16 24 C 0.30 2.05 12.95 -90.30 -1.17 0.88 16 25 N -0.57 -4.39 5.61 -11.76 -0.07 -4.45 16 26 H 0.43 2.24 7.52 -40.82 -0.31 1.94 16 27 C -0.08 -0.96 6.61 -83.79 -0.55 -1.51 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 1.06 3.28 -51.93 -0.17 0.89 16 30 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.40 6.46 8.54 -40.82 -0.35 6.11 16 33 H 0.12 1.51 7.54 -51.93 -0.39 1.11 16 34 H 0.08 1.00 8.12 -51.93 -0.42 0.58 16 35 H 0.12 1.54 5.88 -51.93 -0.31 1.23 16 36 H 0.06 0.53 5.45 -51.93 -0.28 0.24 16 37 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.21 1.52 8.06 -52.49 -0.42 1.09 16 39 H 0.23 0.26 8.06 -52.49 -0.42 -0.16 16 LS Contribution 322.03 15.07 4.85 4.85 Total: -1.00 -35.35 322.03 -9.29 -44.64 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -4.29 Total: 5.21 kcal Atomic # 6 Polarization: 13.48 SS G_CDS: -4.97 Total: 8.51 kcal Atomic # 7 Polarization: -68.57 SS G_CDS: -0.82 Total: -69.39 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.08 Total: -10.92 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.14 Total: 17.10 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -35.35 -9.29 -44.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299566821.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.113 kcal (2) G-P(sol) polarization free energy of solvation -35.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds