Wall clock time and date at job start Tue Mar 31 2020 03:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47213 * 60.00246 * 10 8 6 12 12 H 1.48502 * 109.47317 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47081 * 299.99875 * 10 8 6 14 14 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 15 15 N 1.46500 * 109.47129 * 65.00299 * 14 2 1 16 16 C 1.34771 * 120.00026 * 179.97438 * 15 14 2 17 17 O 1.21568 * 119.99971 * 359.97438 * 16 15 14 18 18 C 1.47722 * 120.00036 * 179.97438 * 16 15 14 19 19 C 1.40112 * 120.35292 * 359.97438 * 18 16 15 20 20 N 1.31262 * 121.15056 * 179.97438 * 19 18 16 21 21 C 1.32719 * 121.80099 * 0.02663 * 20 19 18 22 22 N 1.37118 * 133.40489 * 180.02562 * 21 20 19 23 23 H 0.96993 * 126.59298 * 0.02562 * 22 21 20 24 24 N 1.40195 * 106.81557 * 179.97438 * 22 21 20 25 25 N 1.28668 * 109.51374 * 359.97438 * 24 22 21 26 26 C 1.35331 * 109.99753 * 0.02562 * 25 24 22 27 27 C 1.39434 * 120.34675 * 179.72556 * 18 16 15 28 28 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 30 30 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 31 31 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 32 32 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 33 33 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 34 34 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 35 35 H 1.09005 * 109.46502 * 184.99774 * 14 2 1 36 36 H 1.08996 * 109.47343 * 304.99842 * 14 2 1 37 37 H 0.97004 * 120.00029 * 359.97438 * 15 14 2 38 38 H 1.08002 * 119.42160 * 0.02562 * 19 18 16 39 39 H 1.07993 * 120.96042 * 359.97347 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9967 -0.4236 3.6858 7 1 2.5577 -1.3410 3.7866 8 6 1.6245 0.2903 4.8166 9 7 0.9404 1.4080 4.6937 10 14 2.0946 -0.3353 6.5128 11 1 3.5734 -0.4243 6.6153 12 1 1.5818 0.6007 7.5453 13 1 1.5018 -1.6800 6.7262 14 6 2.0400 -0.7213 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9964 -0.4129 -3.6659 17 8 2.6287 -1.4451 -3.7795 18 6 1.6052 0.3498 -4.8690 19 6 0.8760 1.5399 -4.7467 20 7 0.5206 2.2303 -5.8050 21 6 0.8321 1.8369 -7.0337 22 7 0.5913 2.3574 -8.2792 23 1 0.1091 3.1744 -8.4811 24 7 1.1771 1.4823 -9.2047 25 7 1.7328 0.5046 -8.5795 26 6 1.5630 0.6523 -7.2451 27 6 1.9621 -0.1045 -6.1380 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 3.1264 -0.7995 1.2056 32 1 1.6054 -1.7198 1.2950 33 1 1.1483 0.8591 2.3518 34 1 0.6807 1.9070 5.4838 35 1 3.1264 -0.7994 -1.2056 36 1 1.6054 -1.7198 -1.2953 37 1 1.1483 0.8592 -2.3518 38 1 0.6023 1.8959 -3.7645 39 1 2.5277 -1.0159 -6.2631 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753619031.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:04 Heat of formation + Delta-G solvation = 96.109548 kcal Electronic energy + Delta-G solvation = -23178.124440 eV Core-core repulsion = 19544.236458 eV Total energy + Delta-G solvation = -3633.887982 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.139 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.91092 -40.36250 -38.68128 -36.93431 -34.58492 -34.50045 -32.73081 -32.23347 -31.19931 -29.98628 -26.86376 -25.76314 -25.22567 -24.35625 -23.22837 -22.46908 -21.16893 -20.14540 -19.24525 -18.85020 -17.56931 -17.13858 -16.80645 -16.66444 -15.88771 -15.56635 -14.78025 -14.49331 -14.42962 -14.04774 -13.83355 -13.67348 -13.52359 -13.12593 -13.04291 -12.71659 -12.50232 -12.39742 -12.11903 -12.02429 -11.10907 -10.94787 -10.78806 -10.68732 -10.58694 -10.44509 -10.12130 -9.97943 -9.90621 -9.70302 -9.64823 -9.19375 -8.89736 -6.95251 -5.79540 -3.08049 -0.35360 0.07846 1.44658 1.51380 2.38114 2.74284 3.19064 3.30670 3.43117 3.47597 3.48420 3.66840 3.71050 4.04707 4.13137 4.45911 4.56755 4.73572 4.96814 5.13746 5.14712 5.25120 5.30895 5.54101 5.55065 5.73226 5.89329 5.89808 6.02839 6.09604 6.15620 6.29241 6.36452 6.60574 6.72337 6.81510 6.88852 7.19588 7.23135 7.67869 7.90049 8.39695 9.50967 10.07796 10.42319 11.43310 Molecular weight = 304.14amu Principal moments of inertia in cm(-1) A = 0.042486 B = 0.002139 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.882092 B =13089.230813 C =13592.643819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 H 0.078 0.922 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.240 4.240 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.126 3.874 15 N -0.716 5.716 16 C 0.567 3.433 17 O -0.530 6.530 18 C -0.205 4.205 19 C 0.215 3.785 20 N -0.487 5.487 21 C 0.294 3.706 22 N -0.482 5.482 23 H 0.455 0.545 24 N 0.020 4.980 25 N -0.190 5.190 26 C -0.075 4.075 27 C 0.085 3.915 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.042 0.958 31 H 0.022 0.978 32 H 0.023 0.977 33 H 0.384 0.616 34 H 0.256 0.744 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.399 0.601 38 H 0.180 0.820 39 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.104 2.454 -24.823 25.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.131 4.131 3 H 0.096 0.904 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.371 4.371 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.003 3.997 15 N -0.368 5.368 16 C 0.352 3.648 17 O -0.408 6.408 18 C -0.214 4.214 19 C 0.041 3.959 20 N -0.200 5.200 21 C 0.049 3.951 22 N -0.208 5.208 23 H 0.303 0.697 24 N 0.036 4.964 25 N -0.072 5.072 26 C -0.200 4.200 27 C 0.054 3.946 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.061 0.939 31 H 0.039 0.961 32 H 0.041 0.959 33 H 0.218 0.782 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.235 0.765 38 H 0.197 0.803 39 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -1.769 2.065 -26.235 26.376 hybrid contribution -0.313 0.532 1.756 1.861 sum -2.081 2.597 -24.479 24.704 Atomic orbital electron populations 1.21811 0.94586 1.02079 1.01546 1.21576 0.96768 1.00601 0.94135 0.90363 1.20573 0.96682 0.94224 0.85319 1.42325 1.67082 1.27582 1.00548 1.19188 1.28779 1.05502 0.83623 0.91189 1.24738 1.00971 0.97427 0.97877 1.69643 1.43398 1.16652 1.28625 0.86252 0.78016 0.77722 0.84102 1.21254 1.21716 1.21262 1.21515 1.00520 0.95322 0.82349 1.45956 1.57208 1.27858 1.05753 1.17654 0.79824 0.84722 0.82611 1.90828 1.39724 1.23800 1.86398 1.20816 1.06523 0.99362 0.94671 1.23126 0.88091 0.88105 0.96574 1.66705 1.23958 1.33837 0.95541 1.19610 0.95512 0.91994 0.87989 1.47563 1.46860 1.24298 1.02045 0.69676 1.81765 1.06859 0.95727 1.12004 1.74918 1.13299 1.15146 1.03792 1.20414 1.08104 0.98911 0.92579 1.21106 0.89335 0.96663 0.87503 0.92698 0.91039 0.93932 0.96054 0.95942 0.78197 0.93470 0.90844 0.90849 0.76472 0.80278 0.81466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 8.94 37.16 0.33 -1.53 16 2 C -0.11 -1.52 2.46 -90.62 -0.22 -1.74 16 3 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 4 C 0.16 2.97 5.65 -4.04 -0.02 2.95 16 5 N -0.73 -17.56 5.33 -59.91 -0.32 -17.88 16 6 C -0.24 -6.54 9.99 -15.06 -0.15 -6.69 16 7 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 8 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 9 N -0.93 -27.54 13.06 55.49 0.72 -26.81 16 10 Si 0.91 22.06 29.55 -169.99 -5.02 17.03 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 14 C 0.13 1.48 5.06 -4.04 -0.02 1.46 16 15 N -0.72 -6.65 5.24 -61.29 -0.32 -6.97 16 16 C 0.57 5.96 7.77 -12.39 -0.10 5.86 16 17 O -0.53 -7.51 16.39 5.31 0.09 -7.42 16 18 C -0.20 -1.72 5.88 -104.87 -0.62 -2.34 16 19 C 0.21 1.49 10.69 -17.09 -0.18 1.30 16 20 N -0.49 -4.04 10.37 -12.03 -0.12 -4.17 16 21 C 0.29 2.59 8.49 -155.92 -1.32 1.27 16 22 N -0.48 -3.42 7.53 31.15 0.23 -3.18 16 23 H 0.45 1.63 8.96 -182.53 -1.64 0.00 16 24 N 0.02 0.18 13.82 60.35 0.83 1.01 16 25 N -0.19 -1.98 12.40 32.17 0.40 -1.58 16 26 C -0.07 -0.72 7.27 -84.73 -0.62 -1.34 16 27 C 0.08 0.75 9.75 -38.51 -0.38 0.38 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.07 1.13 7.18 -51.93 -0.37 0.76 16 30 H 0.04 0.41 7.18 -51.93 -0.37 0.04 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.38 9.58 6.85 -40.82 -0.28 9.30 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.40 2.64 5.69 -40.82 -0.23 2.41 16 38 H 0.18 0.68 6.39 -52.49 -0.34 0.34 16 39 H 0.17 1.38 7.71 -52.49 -0.40 0.97 16 LS Contribution 337.44 15.07 5.09 5.09 Total: -1.00 -33.73 337.44 -7.53 -41.26 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -5.72 Total: 4.54 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -3.39 Total: -0.92 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: 1.43 Total: -59.58 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: 0.09 Total: -7.42 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.73 -7.53 -41.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753619031.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.374 kcal (2) G-P(sol) polarization free energy of solvation -33.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds