Wall clock time and date at job start Tue Mar 31 2020 03:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47159 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47290 * 120.00044 * 10 8 6 13 13 H 1.48503 * 109.47163 * 240.00049 * 10 8 6 14 14 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 15 15 N 1.46500 * 109.47129 * 65.00299 * 14 2 1 16 16 C 1.34771 * 120.00026 * 179.97438 * 15 14 2 17 17 O 1.21558 * 120.00065 * 359.97438 * 16 15 14 18 18 C 1.47822 * 120.00365 * 180.02562 * 16 15 14 19 19 C 1.41579 * 120.37157 * 359.97438 * 18 16 15 20 20 C 1.34820 * 120.11524 * 179.97438 * 19 18 16 21 21 N 1.36058 * 120.82641 * 0.04597 * 20 19 18 22 22 N 1.40247 * 133.72935 * 180.02562 * 21 20 19 23 23 N 1.28976 * 107.02275 * 179.97438 * 22 21 20 24 24 N 1.28543 * 110.83708 * 0.02562 * 23 22 21 25 25 C 1.32619 * 110.19148 * 359.97438 * 24 23 22 26 26 C 1.38450 * 120.37775 * 179.72172 * 18 16 15 27 27 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 28 28 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 29 29 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 31 31 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 32 32 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 33 33 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 34 34 H 1.09005 * 109.46502 * 184.99774 * 14 2 1 35 35 H 1.08996 * 109.47343 * 304.99842 * 14 2 1 36 36 H 0.97004 * 120.00029 * 359.97438 * 15 14 2 37 37 H 1.08000 * 119.94281 * 359.97438 * 19 18 16 38 38 H 1.08004 * 119.58502 * 180.02562 * 20 19 18 39 39 H 1.08002 * 120.51688 * 0.02562 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9967 -0.4236 3.6858 7 1 2.5577 -1.3410 3.7866 8 6 1.6245 0.2903 4.8166 9 7 0.9404 1.4080 4.6937 10 14 2.0946 -0.3353 6.5128 11 1 2.8565 -1.6029 6.3792 12 1 2.9366 0.6778 7.1983 13 1 0.8649 -0.5779 7.3093 14 6 2.0400 -0.7213 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9964 -0.4129 -3.6659 17 8 2.6286 -1.4450 -3.7795 18 6 1.6059 0.3508 -4.8698 19 6 0.8700 1.5541 -4.7467 20 6 0.5170 2.2468 -5.8482 21 7 0.8583 1.8048 -7.0889 22 7 0.6411 2.2930 -8.3856 23 7 1.1938 1.4597 -9.2002 24 7 1.7414 0.4890 -8.5597 25 6 1.5680 0.6464 -7.2544 26 6 1.9601 -0.0997 -6.1302 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1264 -0.7995 1.2056 31 1 1.6054 -1.7198 1.2950 32 1 1.1483 0.8591 2.3518 33 1 0.6807 1.9070 5.4838 34 1 3.1264 -0.7994 -1.2056 35 1 1.6054 -1.7198 -1.2953 36 1 1.1483 0.8592 -2.3518 37 1 0.5910 1.9177 -3.7688 38 1 -0.0439 3.1639 -5.7443 39 1 2.5245 -1.0130 -6.2476 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753626786.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:12 Heat of formation + Delta-G solvation = 122.324573 kcal Electronic energy + Delta-G solvation = -23225.556642 eV Core-core repulsion = 19592.805430 eV Total energy + Delta-G solvation = -3632.751213 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.139 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.90103 -40.59223 -38.75765 -37.06143 -34.69821 -34.52073 -33.06617 -32.29693 -31.07407 -30.15551 -27.25035 -26.02380 -25.31227 -24.80080 -23.37732 -22.60193 -21.39126 -20.27124 -19.15593 -18.58846 -17.63051 -17.39244 -17.05230 -16.24082 -15.82209 -15.65498 -15.35190 -14.68990 -14.52106 -14.15508 -13.98128 -13.74889 -13.57704 -13.18488 -12.98015 -12.82479 -12.56796 -12.48732 -12.19773 -12.04053 -11.57077 -11.18307 -11.03071 -10.84521 -10.76241 -10.73572 -10.64203 -10.42261 -10.06576 -9.76932 -9.42075 -9.21103 -8.95972 -7.00815 -5.84996 -3.13642 -0.51763 -0.18314 1.12770 1.53924 2.00418 2.46872 2.84704 3.16387 3.38356 3.44703 3.46467 3.48360 3.69752 3.94893 4.24974 4.31907 4.51766 4.68390 4.83736 4.86566 5.02309 5.03885 5.10201 5.20432 5.31868 5.49716 5.62480 5.69033 5.77489 5.79337 5.91424 6.05727 6.16932 6.27475 6.52421 6.64377 6.73388 7.03483 7.64059 7.68920 7.82344 8.34147 9.45777 10.01831 10.36217 11.37953 Molecular weight = 304.14amu Principal moments of inertia in cm(-1) A = 0.043128 B = 0.002134 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.074474 B =13117.941469 C =13611.350004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.111 4.111 3 H 0.078 0.922 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.239 4.239 7 H 0.071 0.929 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.124 3.876 15 N -0.710 5.710 16 C 0.557 3.443 17 O -0.520 6.520 18 C -0.067 4.067 19 C -0.115 4.115 20 C 0.110 3.890 21 N -0.295 5.295 22 N -0.107 5.107 23 N -0.007 5.007 24 N -0.312 5.312 25 C 0.237 3.763 26 C -0.023 4.023 27 H 0.071 0.929 28 H 0.041 0.959 29 H 0.054 0.946 30 H 0.022 0.978 31 H 0.023 0.977 32 H 0.384 0.616 33 H 0.255 0.745 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.401 0.599 37 H 0.173 0.827 38 H 0.190 0.810 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.090 2.013 -20.723 20.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.131 4.131 3 H 0.097 0.903 4 C 0.032 3.968 5 N -0.376 5.376 6 C -0.371 4.371 7 H 0.089 0.911 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.001 3.999 15 N -0.362 5.362 16 C 0.341 3.659 17 O -0.396 6.396 18 C -0.079 4.079 19 C -0.139 4.139 20 C -0.017 4.017 21 N -0.076 5.076 22 N -0.090 5.090 23 N 0.000 5.000 24 N -0.172 5.172 25 C -0.017 4.017 26 C -0.047 4.047 27 H 0.090 0.910 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.040 0.960 31 H 0.041 0.959 32 H 0.218 0.782 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.237 0.763 37 H 0.191 0.809 38 H 0.207 0.793 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -1.708 1.561 -22.257 22.377 hybrid contribution -0.293 0.474 1.983 2.060 sum -2.001 2.035 -20.274 20.473 Atomic orbital electron populations 1.21815 0.94549 1.02139 1.01535 1.21579 0.96781 1.00595 0.94103 0.90349 1.20573 0.96721 0.94242 0.85279 1.42334 1.67084 1.27570 1.00566 1.19277 1.28690 1.05521 0.83563 0.91055 1.24743 1.00938 0.97417 0.97922 1.69660 1.43474 1.16696 1.28440 0.86107 0.77605 0.77883 0.84539 1.20509 1.21857 1.21851 1.21571 1.00676 0.95381 0.82236 1.45964 1.56725 1.27823 1.05695 1.17731 0.80416 0.84965 0.82772 1.90863 1.39023 1.23409 1.86290 1.20395 0.97918 0.95325 0.94279 1.21243 0.98956 0.94389 0.99301 1.21610 0.99754 1.01236 0.79094 1.49067 1.33382 1.16797 1.08349 1.82842 1.25284 1.19809 0.81040 1.77917 1.02685 0.96541 1.22849 1.75277 1.23412 1.19221 0.99326 1.22777 0.95517 0.88251 0.95133 1.20807 0.97669 0.99894 0.86342 0.90965 0.94012 0.92641 0.96016 0.95899 0.78216 0.93543 0.90656 0.90662 0.76273 0.80946 0.79320 0.80063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 8.94 37.16 0.33 -1.39 16 2 C -0.11 -1.41 2.46 -90.62 -0.22 -1.63 16 3 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.16 2.85 5.65 -4.04 -0.02 2.82 16 5 N -0.73 -17.07 5.33 -59.91 -0.32 -17.39 16 6 C -0.24 -6.40 9.99 -15.06 -0.15 -6.55 16 7 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 8 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 9 N -0.93 -27.06 13.06 55.49 0.72 -26.34 16 10 Si 0.91 21.72 29.55 -169.99 -5.02 16.70 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 C 0.12 1.32 5.06 -4.04 -0.02 1.30 16 15 N -0.71 -5.60 5.24 -61.26 -0.32 -5.92 16 16 C 0.56 5.03 7.78 -12.34 -0.10 4.93 16 17 O -0.52 -6.69 16.37 5.31 0.09 -6.60 16 18 C -0.07 -0.44 5.90 -104.63 -0.62 -1.06 16 19 C -0.12 -0.41 9.48 -39.52 -0.37 -0.79 16 20 C 0.11 0.48 11.19 -16.89 -0.19 0.29 16 21 N -0.30 -2.52 3.94 -12.43 -0.05 -2.57 16 22 N -0.11 -1.17 13.98 60.35 0.84 -0.33 16 23 N -0.01 -0.09 13.35 60.35 0.81 0.72 16 24 N -0.31 -3.75 12.27 31.03 0.38 -3.37 16 25 C 0.24 2.27 8.02 -156.36 -1.25 1.02 16 26 C -0.02 -0.18 9.70 -38.65 -0.37 -0.55 16 27 H 0.07 1.08 7.18 -51.93 -0.37 0.71 16 28 H 0.04 0.36 7.18 -51.93 -0.37 -0.02 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.38 9.30 6.85 -40.82 -0.28 9.02 16 33 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.40 2.02 5.72 -40.82 -0.23 1.78 16 37 H 0.17 0.05 6.46 -52.49 -0.34 -0.29 16 38 H 0.19 0.17 8.06 -52.48 -0.42 -0.26 16 39 H 0.18 1.32 7.67 -52.49 -0.40 0.92 16 LS Contribution 338.21 15.07 5.10 5.10 Total: -1.00 -34.30 338.21 -5.37 -39.66 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -4.51 Total: 2.44 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -3.09 Total: -2.10 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: 2.07 Total: -55.19 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: 0.09 Total: -6.60 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.30 -5.37 -39.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753626786.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.986 kcal (2) G-P(sol) polarization free energy of solvation -34.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds