Wall clock time and date at job start Tue Mar 31 2020 03:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.47064 * 2 1 4 4 C 1.52999 * 109.47045 * 240.00005 * 2 1 3 5 5 N 1.46496 * 109.47274 * 184.99722 * 4 2 1 6 6 C 1.46498 * 119.99892 * 270.00115 * 5 4 2 7 7 C 1.36933 * 119.99831 * 90.00147 * 5 4 2 8 8 H 1.08001 * 120.00107 * 22.33747 * 7 5 4 9 9 C 1.38810 * 120.00042 * 202.33751 * 7 5 4 10 10 N 1.31618 * 119.99957 * 11.35932 * 9 7 5 11 11 Si 1.86806 * 119.99946 * 191.36469 * 9 7 5 12 12 H 1.48500 * 109.47552 * 89.99655 * 11 9 7 13 13 H 1.48501 * 109.47007 * 209.99632 * 11 9 7 14 14 H 1.48499 * 109.46962 * 329.99389 * 11 9 7 15 15 N 1.46503 * 109.46929 * 120.00189 * 2 1 3 16 16 C 1.34779 * 119.99703 * 274.99497 * 15 2 1 17 17 O 1.21554 * 120.00267 * 0.02562 * 16 15 2 18 18 C 1.47821 * 119.99440 * 180.02562 * 16 15 2 19 19 C 1.41584 * 120.37665 * 359.97438 * 18 16 15 20 20 C 1.34816 * 120.11258 * 179.70759 * 19 18 16 21 21 N 1.36064 * 120.82810 * 0.27598 * 20 19 18 22 22 N 1.40248 * 133.72869 * 179.97438 * 21 20 19 23 23 N 1.28962 * 107.02169 * 180.02562 * 22 21 20 24 24 N 1.28541 * 110.84439 * 0.02562 * 23 22 21 25 25 C 1.32619 * 110.18537 * 359.97438 * 24 23 22 26 26 C 1.38456 * 120.37115 * 180.28100 * 18 16 15 27 27 H 1.08998 * 109.46729 * 299.99525 * 1 2 3 28 28 H 1.08994 * 109.47030 * 59.99910 * 1 2 3 29 29 H 1.08998 * 109.47064 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47428 * 305.00374 * 4 2 1 31 31 H 1.09008 * 109.46866 * 64.99490 * 4 2 1 32 32 H 1.09005 * 109.46815 * 94.22929 * 6 5 4 33 33 H 1.09006 * 109.46825 * 214.22305 * 6 5 4 34 34 H 1.08994 * 109.47373 * 334.22454 * 6 5 4 35 35 H 0.97005 * 119.99764 * 180.02562 * 10 9 7 36 36 H 0.96999 * 119.99949 * 95.00120 * 15 2 1 37 37 H 1.07994 * 119.93718 * 359.97438 * 19 18 16 38 38 H 1.08003 * 119.58200 * 180.30266 * 20 19 18 39 39 H 1.07997 * 120.52131 * 359.97438 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.8263 -1.1906 6 6 4.3343 0.2341 -1.7614 7 6 4.0850 -1.9158 -0.6024 8 1 3.5339 -2.8399 -0.5087 9 6 5.3863 -1.8325 -0.1265 10 7 5.9795 -0.6613 -0.0340 11 14 6.2957 -3.3829 0.3825 12 1 7.0230 -3.9370 -0.7876 13 1 7.2653 -3.0571 1.4591 14 1 5.3216 -4.3870 0.8808 15 7 2.0184 -0.6907 1.1962 16 6 2.1472 -0.0183 2.3571 17 8 1.8577 1.1611 2.4118 18 6 2.6404 -0.7151 3.5639 19 6 2.9793 -2.0887 3.5093 20 6 3.4342 -2.7175 4.6116 21 7 3.5696 -2.0497 5.7894 22 7 4.0037 -2.4213 7.0702 23 7 3.9247 -1.3715 7.8150 24 7 3.4848 -0.3670 7.1443 25 6 3.2481 -0.7231 5.8890 26 6 2.7702 -0.0333 4.7620 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6054 -1.7197 -1.2952 31 1 1.7516 -0.1583 -2.1370 32 1 4.6023 0.9456 -0.9802 33 1 5.2404 -0.2028 -2.1813 34 1 3.7810 0.7484 -2.5471 35 1 6.8891 -0.6032 0.2982 36 1 2.2491 -1.6318 1.1526 37 1 2.8772 -2.6325 2.5818 38 1 3.6948 -3.7642 4.5591 39 1 2.5133 1.0136 4.8280 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754317983.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:47 Heat of formation + Delta-G solvation = 140.183445 kcal Electronic energy + Delta-G solvation = -25218.600998 eV Core-core repulsion = 21586.624204 eV Total energy + Delta-G solvation = -3631.976794 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.139 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.41400 -39.94857 -38.22814 -36.51936 -34.25809 -33.99183 -32.51108 -31.34539 -30.55751 -30.11570 -26.33580 -25.78775 -25.44240 -24.78654 -22.87519 -22.14682 -21.02326 -20.09482 -18.69588 -18.07480 -16.95401 -16.90930 -16.77346 -15.70760 -15.19612 -15.07086 -14.90168 -14.51587 -13.91326 -13.70323 -13.43952 -13.29474 -13.04133 -12.98186 -12.58138 -12.37200 -12.11252 -11.99209 -11.59652 -11.51994 -11.44610 -11.12582 -11.03322 -10.86556 -10.56828 -10.41826 -10.21922 -10.19730 -10.01344 -9.76572 -8.76305 -8.74480 -8.55567 -6.96308 -5.91802 -3.39225 0.04417 0.34090 1.61651 2.03320 2.58360 3.13443 3.16471 3.24082 3.29807 3.55452 3.73320 4.03274 4.26985 4.30217 4.57175 4.77232 4.97028 5.16359 5.20687 5.32731 5.38082 5.49334 5.54339 5.67243 5.76345 5.82296 5.84936 6.01046 6.08121 6.21409 6.29468 6.35690 6.61651 6.71991 6.94499 7.25443 7.52447 7.66218 7.89720 8.18419 8.27545 8.50549 9.02046 9.66457 10.16974 11.11520 Molecular weight = 304.14amu Principal moments of inertia in cm(-1) A = 0.013236 B = 0.005709 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.862102 B = 4903.524826 C = 6325.236873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.117 3.883 3 H 0.081 0.919 4 C 0.141 3.859 5 N -0.599 5.599 6 C 0.163 3.837 7 C -0.263 4.263 8 H 0.067 0.933 9 C 0.010 3.990 10 N -0.894 5.894 11 Si 0.891 3.109 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.277 1.277 15 N -0.671 5.671 16 C 0.559 3.441 17 O -0.540 6.540 18 C -0.051 4.051 19 C -0.101 4.101 20 C 0.100 3.900 21 N -0.293 5.293 22 N -0.116 5.116 23 N -0.013 5.013 24 N -0.320 5.320 25 C 0.239 3.761 26 C -0.035 4.035 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.029 0.971 33 H 0.044 0.956 34 H -0.003 1.003 35 H 0.254 0.746 36 H 0.405 0.595 37 H 0.176 0.824 38 H 0.186 0.814 39 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.157 -3.479 2.242 10.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.009 3.991 3 H 0.100 0.900 4 C 0.013 3.987 5 N -0.321 5.321 6 C 0.018 3.982 7 C -0.393 4.393 8 H 0.085 0.915 9 C -0.190 4.190 10 N -0.538 5.538 11 Si 0.721 3.279 12 H -0.213 1.213 13 H -0.217 1.217 14 H -0.203 1.203 15 N -0.321 5.321 16 C 0.344 3.656 17 O -0.418 6.418 18 C -0.062 4.062 19 C -0.125 4.125 20 C -0.027 4.027 21 N -0.073 5.073 22 N -0.100 5.100 23 N -0.006 5.006 24 N -0.181 5.181 25 C -0.014 4.014 26 C -0.059 4.059 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.047 0.953 33 H 0.063 0.937 34 H 0.015 0.985 35 H 0.064 0.936 36 H 0.242 0.758 37 H 0.193 0.807 38 H 0.203 0.797 39 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -8.677 -2.855 3.849 9.912 hybrid contribution 0.814 -1.379 -0.623 1.719 sum -7.863 -4.234 3.226 9.495 Atomic orbital electron populations 1.22163 0.96413 1.01491 1.01902 1.21979 0.92065 0.98622 0.86405 0.90041 1.21208 0.85951 0.98009 0.93550 1.43886 0.98883 1.22649 1.66662 1.20815 0.93021 0.90443 0.93926 1.19064 0.97328 0.89468 1.33407 0.91536 1.25009 0.98568 0.96027 0.99418 1.70058 1.13406 1.21538 1.48770 0.86495 0.80263 0.82831 0.78337 1.21288 1.21736 1.20278 1.45654 1.63699 1.14394 1.08322 1.17625 0.78668 0.86405 0.82916 1.90769 1.51071 1.14987 1.85005 1.20533 0.97388 0.93669 0.94655 1.21365 0.98272 0.94254 0.98561 1.21567 1.00181 0.99944 0.80983 1.48969 1.38525 1.09558 1.10217 1.82756 1.25058 1.18450 0.83700 1.77824 1.07023 0.93392 1.22388 1.75211 1.22079 1.20899 0.99897 1.22745 0.99277 0.83599 0.95777 1.20745 0.96635 1.01870 0.86683 0.92767 0.91932 0.92841 0.93173 0.92649 0.95301 0.93679 0.98451 0.93558 0.75827 0.80703 0.79660 0.80387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.48 37.16 0.35 -1.65 16 2 C 0.12 1.84 2.88 -67.92 -0.20 1.64 16 3 H 0.08 1.52 7.58 -51.93 -0.39 1.13 16 4 C 0.14 2.32 5.36 -4.04 -0.02 2.30 16 5 N -0.60 -12.63 2.82 -181.12 -0.51 -13.14 16 6 C 0.16 3.63 9.01 59.85 0.54 4.17 16 7 C -0.26 -5.87 8.02 -15.06 -0.12 -5.99 16 8 H 0.07 1.39 7.84 -52.49 -0.41 0.98 16 9 C 0.01 0.23 5.13 -17.43 -0.09 0.14 16 10 N -0.89 -23.39 10.59 55.49 0.59 -22.80 16 11 Si 0.89 18.90 29.57 -169.99 -5.03 13.88 16 12 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 13 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.28 -5.37 7.11 56.52 0.40 -4.96 16 15 N -0.67 -10.55 4.44 -54.75 -0.24 -10.80 16 16 C 0.56 9.28 7.74 -12.34 -0.10 9.18 16 17 O -0.54 -10.45 16.03 5.32 0.09 -10.36 16 18 C -0.05 -0.72 5.90 -104.62 -0.62 -1.34 16 19 C -0.10 -1.19 9.48 -39.52 -0.37 -1.57 16 20 C 0.10 1.15 11.19 -16.89 -0.19 0.96 16 21 N -0.29 -4.26 3.94 -12.43 -0.05 -4.31 16 22 N -0.12 -1.87 13.98 60.35 0.84 -1.02 16 23 N -0.01 -0.23 13.35 60.35 0.81 0.58 16 24 N -0.32 -5.40 12.27 31.03 0.38 -5.02 16 25 C 0.24 3.68 8.02 -156.36 -1.25 2.43 16 26 C -0.04 -0.50 9.70 -38.65 -0.37 -0.88 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.76 8.03 -51.93 -0.42 0.35 16 31 H 0.06 0.84 7.86 -51.92 -0.41 0.43 16 32 H 0.03 0.72 7.42 -51.93 -0.39 0.33 16 33 H 0.04 1.10 7.19 -51.93 -0.37 0.72 16 34 H 0.00 -0.06 7.84 -51.93 -0.41 -0.47 16 35 H 0.25 6.65 8.31 -40.82 -0.34 6.31 16 36 H 0.40 5.92 5.47 -40.82 -0.22 5.70 16 37 H 0.18 1.75 6.46 -52.49 -0.34 1.41 16 38 H 0.19 1.48 8.06 -52.48 -0.42 1.06 16 39 H 0.18 2.40 7.67 -52.49 -0.40 1.99 16 LS Contribution 334.39 15.07 5.04 5.04 Total: -1.00 -29.73 334.39 -5.12 -34.85 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -4.59 Total: 3.70 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: -2.44 Total: 9.41 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: 1.82 Total: -56.51 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.73 -5.12 -34.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754317983.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.031 kcal (2) G-P(sol) polarization free energy of solvation -29.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds