Wall clock time and date at job start Tue Mar 31 2020 04:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36936 * 120.00205 * 2 1 4 4 H 1.07995 * 120.00465 * 160.18509 * 3 2 1 5 5 C 1.38813 * 119.99478 * 339.90702 * 3 2 1 6 6 N 1.31613 * 120.00548 * 347.52785 * 5 3 2 7 7 Si 1.86804 * 119.99817 * 167.52386 * 5 3 2 8 8 H 1.48505 * 109.46891 * 59.99869 * 7 5 3 9 9 H 1.48498 * 109.47332 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47428 * 300.00373 * 7 5 3 11 11 C 1.46498 * 120.00074 * 179.97438 * 2 1 3 12 12 H 1.09001 * 110.88928 * 177.57432 * 11 2 1 13 13 C 1.55160 * 111.00366 * 53.65369 * 11 2 1 14 14 C 1.54322 * 102.94012 * 206.42592 * 13 11 2 15 15 N 1.47018 * 107.27606 * 22.18793 * 14 13 11 16 16 C 1.34777 * 125.65377 * 181.09234 * 15 14 13 17 17 O 1.21619 * 120.00430 * 179.97438 * 16 15 14 18 18 C 1.47332 * 119.99574 * 359.96652 * 16 15 14 19 19 C 1.36287 * 126.22471 * 179.71347 * 18 16 15 20 20 N 1.35761 * 106.91747 * 179.89477 * 19 18 16 21 21 C 1.35679 * 107.69088 * 0.26288 * 20 19 18 22 22 N 1.30595 * 108.91396 * 359.93809 * 21 20 19 23 23 C 1.51601 * 109.81777 * 179.97438 * 21 20 19 24 24 C 1.54512 * 104.27993 * 16.62673 * 23 21 20 25 25 C 1.47074 * 141.30211 * 179.74982 * 20 19 18 26 26 C 1.47424 * 108.70189 * 1.06301 * 15 14 13 27 27 H 1.09004 * 109.47189 * 84.84501 * 1 2 3 28 28 H 1.08994 * 109.47272 * 204.84227 * 1 2 3 29 29 H 1.09004 * 109.47281 * 324.84549 * 1 2 3 30 30 H 0.97004 * 120.00667 * 180.02562 * 6 5 3 31 31 H 1.08999 * 110.71650 * 324.78455 * 13 11 2 32 32 H 1.08998 * 110.72387 * 88.05909 * 13 11 2 33 33 H 1.09000 * 109.88037 * 262.77215 * 14 13 11 34 34 H 1.09004 * 110.01235 * 141.68240 * 14 13 11 35 35 H 1.08002 * 126.54463 * 0.02562 * 19 18 16 36 36 H 1.09003 * 110.47130 * 135.32591 * 23 21 20 37 37 H 1.08999 * 110.46940 * 257.92275 * 23 21 20 38 38 H 1.08998 * 110.94412 * 92.79312 * 24 23 21 39 39 H 1.08999 * 110.93841 * 216.49074 * 24 23 21 40 40 H 1.08996 * 110.23033 * 44.29464 * 25 20 19 41 41 H 1.09004 * 110.22533 * 282.34538 * 25 20 19 42 42 H 1.09003 * 110.37087 * 217.03084 * 26 15 14 43 43 H 1.08997 * 110.36911 * 94.70894 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1817 1.2136 0.3170 5 6 1.5189 2.3514 -0.4130 6 7 0.3587 2.2883 -1.0311 7 14 2.3169 4.0095 -0.0914 8 1 3.6404 4.0605 -0.7629 9 1 1.4488 5.0889 -0.6269 10 1 2.4962 4.1974 1.3707 11 6 2.1975 -1.2687 0.0006 12 1 3.2729 -1.0966 -0.0426 13 6 1.7321 -2.1801 -1.1657 14 6 2.0380 -3.5982 -0.6394 15 7 2.0991 -3.5158 0.8272 16 6 2.3654 -4.5405 1.6612 17 8 2.3906 -4.3558 2.8630 18 6 2.6258 -5.8846 1.1169 19 6 2.9121 -7.0044 1.8390 20 7 3.0774 -8.0166 0.9495 21 6 2.8974 -7.5057 -0.2945 22 7 2.6298 -6.2315 -0.1942 23 6 3.0725 -8.5995 -1.3296 24 6 2.9602 -9.9112 -0.5207 25 6 3.3890 -9.4527 0.8896 26 6 1.8216 -2.1264 1.2346 27 1 -0.3634 0.0923 -1.0235 28 1 -0.3633 -0.9325 0.4317 29 1 -0.3634 0.8402 0.5917 30 1 -0.0819 3.1028 -1.3201 31 1 0.6643 -2.0584 -1.3477 32 1 2.3046 -1.9724 -2.0697 33 1 2.9956 -3.9405 -1.0316 34 1 1.2475 -4.2861 -0.9395 35 1 2.9903 -7.0739 2.9139 36 1 2.2828 -8.5451 -2.0791 37 1 4.0524 -8.5249 -1.8010 38 1 1.9344 -10.2795 -0.5162 39 1 3.6426 -10.6676 -0.9085 40 1 2.8236 -9.9930 1.6489 41 1 4.4581 -9.6125 1.0300 42 1 2.4387 -1.8513 2.0899 43 1 0.7651 -2.0049 1.4734 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971558834.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:18:40 Heat of formation + Delta-G solvation = 74.486460 kcal Electronic energy + Delta-G solvation = -24790.310077 eV Core-core repulsion = 21259.024791 eV Total energy + Delta-G solvation = -3531.285286 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.68075 -39.40143 -37.29227 -36.42590 -34.67757 -32.34864 -31.48069 -29.70203 -29.15156 -27.67707 -27.49349 -25.97864 -24.36405 -22.61897 -22.08299 -21.53657 -20.26054 -19.14746 -18.88122 -17.30911 -16.93233 -16.64981 -16.27622 -15.70899 -15.15630 -14.72952 -14.24396 -14.21065 -13.83762 -13.72524 -13.28019 -13.18490 -13.11849 -12.97035 -12.46367 -12.35089 -12.17610 -12.15070 -11.72464 -11.55932 -11.18750 -10.84279 -10.71432 -10.38960 -10.37043 -10.16867 -10.16144 -9.91678 -9.77616 -9.73590 -9.64958 -8.63626 -8.50524 -8.07015 -6.74806 -5.68017 -3.12536 1.55360 2.30245 2.33972 3.37348 3.43481 3.47940 3.48754 3.52348 3.71563 3.95389 4.13968 4.22207 4.54063 4.66839 4.80071 4.88850 4.93207 5.11386 5.28026 5.28697 5.33916 5.40245 5.44281 5.63408 5.75493 5.86364 5.92524 6.00244 6.11280 6.27775 6.44715 6.50435 6.60550 6.63306 6.77544 6.84449 6.89477 7.03964 7.47299 7.72831 7.77959 7.86665 7.98970 8.41847 8.54987 9.27485 9.90225 10.38032 11.36791 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.035566 B = 0.002834 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.089686 B = 9879.024241 C =10229.069498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.587 5.587 3 C -0.256 4.256 4 H 0.070 0.930 5 C 0.001 3.999 6 N -0.909 5.909 7 Si 0.907 3.093 8 H -0.283 1.283 9 H -0.291 1.291 10 H -0.284 1.284 11 C 0.173 3.827 12 H 0.077 0.923 13 C -0.154 4.154 14 C 0.120 3.880 15 N -0.597 5.597 16 C 0.612 3.388 17 O -0.555 6.555 18 C -0.042 4.042 19 C 0.048 3.952 20 N -0.482 5.482 21 C 0.181 3.819 22 N -0.440 5.440 23 C -0.039 4.039 24 C -0.130 4.130 25 C 0.102 3.898 26 C 0.086 3.914 27 H 0.031 0.969 28 H 0.000 1.000 29 H 0.046 0.954 30 H 0.253 0.747 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.185 0.815 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.072 0.928 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.181 -27.353 -0.496 27.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.308 5.308 3 C -0.385 4.385 4 H 0.088 0.912 5 C -0.197 4.197 6 N -0.554 5.554 7 Si 0.737 3.263 8 H -0.210 1.210 9 H -0.217 1.217 10 H -0.211 1.211 11 C 0.063 3.937 12 H 0.095 0.905 13 C -0.194 4.194 14 C -0.003 4.003 15 N -0.328 5.328 16 C 0.400 3.600 17 O -0.434 6.434 18 C -0.171 4.171 19 C -0.090 4.090 20 N -0.166 5.166 21 C -0.082 4.082 22 N -0.160 5.160 23 C -0.079 4.079 24 C -0.168 4.168 25 C -0.019 4.019 26 C -0.038 4.038 27 H 0.049 0.951 28 H 0.018 0.982 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.202 0.798 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.107 0.893 39 H 0.121 0.879 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.090 0.910 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.954 -26.674 -0.350 27.132 hybrid contribution 0.475 0.360 0.805 1.002 sum 5.429 -26.314 0.455 26.872 Atomic orbital electron populations 1.20817 0.82296 0.95591 0.99543 1.43838 1.01978 0.99874 1.85076 1.19223 0.96675 0.84868 1.37761 0.91178 1.24967 0.97594 0.98378 0.98715 1.70080 1.17041 1.26832 1.41419 0.86294 0.78376 0.83595 0.78018 1.20976 1.21676 1.21066 1.21397 0.96276 0.85736 0.90320 0.90459 1.23259 1.02543 0.93341 1.00235 1.22002 1.01724 0.97670 0.78902 1.48205 1.67542 1.09124 1.07970 1.16436 0.77034 0.81664 0.84902 1.90776 1.54624 1.83825 1.14166 1.20547 1.12897 0.94653 0.89010 1.22175 1.04795 0.85618 0.96388 1.46340 1.51807 1.09697 1.08711 1.24545 1.05306 0.91457 0.86935 1.70399 1.17891 1.09375 1.18371 1.20660 1.04704 0.87611 0.94886 1.22739 1.03944 0.97534 0.92548 1.22449 1.02442 0.77075 0.99957 1.23025 1.01203 0.79205 1.00381 0.95089 0.98162 0.93525 0.93709 0.90786 0.90715 0.91389 0.91686 0.79798 0.88167 0.88411 0.89301 0.87901 0.88940 0.88974 0.90966 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.06 7.59 59.84 0.45 4.51 16 2 N -0.59 -14.96 2.96 -171.03 -0.51 -15.46 16 3 C -0.26 -7.12 9.65 -15.06 -0.15 -7.26 16 4 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 5 C 0.00 0.04 5.12 -17.43 -0.09 -0.05 16 6 N -0.91 -26.63 10.51 55.49 0.58 -26.04 16 7 Si 0.91 22.16 29.57 -169.99 -5.03 17.14 16 8 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 9 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 11 C 0.17 3.71 3.54 -65.78 -0.23 3.48 16 12 H 0.08 1.67 7.94 -51.93 -0.41 1.26 16 13 C -0.15 -2.87 6.51 -24.90 -0.16 -3.04 16 14 C 0.12 2.05 5.52 -3.07 -0.02 2.03 16 15 N -0.60 -11.26 3.33 -171.82 -0.57 -11.83 16 16 C 0.61 11.59 7.84 -12.56 -0.10 11.49 16 17 O -0.55 -11.77 17.14 5.26 0.09 -11.68 16 18 C -0.04 -0.66 6.81 -83.20 -0.57 -1.23 16 19 C 0.05 0.60 11.75 -16.52 -0.19 0.41 16 20 N -0.48 -4.71 3.55 -112.00 -0.40 -5.11 16 21 C 0.18 2.00 8.58 -154.31 -1.32 0.68 16 22 N -0.44 -6.53 8.77 -6.96 -0.06 -6.59 16 23 C -0.04 -0.22 6.85 -26.65 -0.18 -0.41 16 24 C -0.13 -0.36 7.16 -25.22 -0.18 -0.54 16 25 C 0.10 0.46 7.78 -3.01 -0.02 0.44 16 26 C 0.09 1.75 6.46 -2.53 -0.02 1.74 16 27 H 0.03 0.83 7.42 -51.93 -0.39 0.44 16 28 H 0.00 0.00 6.33 -51.93 -0.33 -0.33 16 29 H 0.05 1.26 7.13 -51.93 -0.37 0.89 16 30 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.07 1.45 7.08 -51.93 -0.37 1.08 16 32 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.07 1.13 7.63 -51.93 -0.40 0.73 16 34 H 0.06 1.08 7.74 -51.93 -0.40 0.68 16 35 H 0.18 1.98 8.06 -52.49 -0.42 1.56 16 36 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.10 0.03 8.14 -51.93 -0.42 -0.39 16 40 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.07 1.53 8.04 -51.93 -0.42 1.11 16 43 H 0.07 1.45 6.33 -51.93 -0.33 1.12 16 LS Contribution 345.12 15.07 5.20 5.20 Total: -1.00 -34.94 345.12 -9.80 -44.74 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -6.34 Total: -2.61 kcal Atomic # 6 Polarization: 15.03 SS G_CDS: -2.78 Total: 12.26 kcal Atomic # 7 Polarization: -64.09 SS G_CDS: -0.95 Total: -65.04 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.09 Total: -11.68 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.03 Total: 17.14 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.94 -9.80 -44.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971558834.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.227 kcal (2) G-P(sol) polarization free energy of solvation -34.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds