Wall clock time and date at job start Tue Mar 31 2020 04:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36936 * 120.00205 * 2 1 4 4 H 1.07995 * 120.00465 * 160.18509 * 3 2 1 5 5 C 1.38813 * 119.99478 * 339.90702 * 3 2 1 6 6 N 1.31613 * 120.00548 * 347.52785 * 5 3 2 7 7 Si 1.86804 * 119.99817 * 167.52386 * 5 3 2 8 8 H 1.48505 * 109.46891 * 59.99869 * 7 5 3 9 9 H 1.48498 * 109.47332 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47428 * 300.00373 * 7 5 3 11 11 C 1.46498 * 120.00074 * 179.97438 * 2 1 3 12 12 H 1.09001 * 110.88928 * 177.57432 * 11 2 1 13 13 C 1.55160 * 111.00366 * 53.65369 * 11 2 1 14 14 C 1.54322 * 102.94012 * 206.42592 * 13 11 2 15 15 N 1.47018 * 107.27606 * 22.18793 * 14 13 11 16 16 C 1.34777 * 125.65377 * 181.09234 * 15 14 13 17 17 O 1.21619 * 120.00430 * 179.97438 * 16 15 14 18 18 C 1.47332 * 119.99574 * 359.96652 * 16 15 14 19 19 C 1.36287 * 126.22471 * 179.71347 * 18 16 15 20 20 N 1.35761 * 106.91747 * 179.89477 * 19 18 16 21 21 C 1.35679 * 107.69088 * 0.26288 * 20 19 18 22 22 N 1.30595 * 108.91396 * 359.93809 * 21 20 19 23 23 C 1.51601 * 109.81777 * 179.97438 * 21 20 19 24 24 C 1.54512 * 104.27993 * 16.62673 * 23 21 20 25 25 C 1.47074 * 141.30211 * 179.74982 * 20 19 18 26 26 C 1.47424 * 108.70189 * 1.06301 * 15 14 13 27 27 H 1.09004 * 109.47189 * 84.84501 * 1 2 3 28 28 H 1.08994 * 109.47272 * 204.84227 * 1 2 3 29 29 H 1.09004 * 109.47281 * 324.84549 * 1 2 3 30 30 H 0.97004 * 120.00667 * 180.02562 * 6 5 3 31 31 H 1.08999 * 110.71650 * 324.78455 * 13 11 2 32 32 H 1.08998 * 110.72387 * 88.05909 * 13 11 2 33 33 H 1.09000 * 109.88037 * 262.77215 * 14 13 11 34 34 H 1.09004 * 110.01235 * 141.68240 * 14 13 11 35 35 H 1.08002 * 126.54463 * 0.02562 * 19 18 16 36 36 H 1.09003 * 110.47130 * 135.32591 * 23 21 20 37 37 H 1.08999 * 110.46940 * 257.92275 * 23 21 20 38 38 H 1.08998 * 110.94412 * 92.79312 * 24 23 21 39 39 H 1.08999 * 110.93841 * 216.49074 * 24 23 21 40 40 H 1.08996 * 110.23033 * 44.29464 * 25 20 19 41 41 H 1.09004 * 110.22533 * 282.34538 * 25 20 19 42 42 H 1.09003 * 110.37087 * 217.03084 * 26 15 14 43 43 H 1.08997 * 110.36911 * 94.70894 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1817 1.2136 0.3170 5 6 1.5189 2.3514 -0.4130 6 7 0.3587 2.2883 -1.0311 7 14 2.3169 4.0095 -0.0914 8 1 3.6404 4.0605 -0.7629 9 1 1.4488 5.0889 -0.6269 10 1 2.4962 4.1974 1.3707 11 6 2.1975 -1.2687 0.0006 12 1 3.2729 -1.0966 -0.0426 13 6 1.7321 -2.1801 -1.1657 14 6 2.0380 -3.5982 -0.6394 15 7 2.0991 -3.5158 0.8272 16 6 2.3654 -4.5405 1.6612 17 8 2.3906 -4.3558 2.8630 18 6 2.6258 -5.8846 1.1169 19 6 2.9121 -7.0044 1.8390 20 7 3.0774 -8.0166 0.9495 21 6 2.8974 -7.5057 -0.2945 22 7 2.6298 -6.2315 -0.1942 23 6 3.0725 -8.5995 -1.3296 24 6 2.9602 -9.9112 -0.5207 25 6 3.3890 -9.4527 0.8896 26 6 1.8216 -2.1264 1.2346 27 1 -0.3634 0.0923 -1.0235 28 1 -0.3633 -0.9325 0.4317 29 1 -0.3634 0.8402 0.5917 30 1 -0.0819 3.1028 -1.3201 31 1 0.6643 -2.0584 -1.3477 32 1 2.3046 -1.9724 -2.0697 33 1 2.9956 -3.9405 -1.0316 34 1 1.2475 -4.2861 -0.9395 35 1 2.9903 -7.0739 2.9139 36 1 2.2828 -8.5451 -2.0791 37 1 4.0524 -8.5249 -1.8010 38 1 1.9344 -10.2795 -0.5162 39 1 3.6426 -10.6676 -0.9085 40 1 2.8236 -9.9930 1.6489 41 1 4.4581 -9.6125 1.0300 42 1 2.4387 -1.8513 2.0899 43 1 0.7651 -2.0049 1.4734 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971558834.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:18:39 Heat of formation + Delta-G solvation = 52.671025 kcal Electronic energy + Delta-G solvation = -24791.256065 eV Core-core repulsion = 21259.024791 eV Total energy + Delta-G solvation = -3532.231274 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.51443 -40.89631 -38.87910 -37.11409 -36.55596 -33.52450 -32.96692 -31.35997 -30.24849 -29.10098 -28.13188 -28.06950 -25.82401 -24.18177 -23.23425 -22.32820 -21.13770 -20.85452 -20.17500 -18.95571 -18.21519 -17.67311 -17.38095 -17.12583 -16.54423 -16.34670 -15.67695 -15.20984 -14.93889 -14.87188 -14.71959 -14.39502 -14.23160 -14.14306 -13.91662 -13.77316 -13.45915 -13.26223 -12.97843 -12.77709 -12.49835 -12.43472 -12.37863 -12.16068 -12.12036 -11.91088 -11.83377 -11.49249 -11.32031 -11.00801 -10.70263 -10.63024 -9.80433 -9.40821 -8.82372 -7.82461 -5.29589 0.50020 1.35321 1.47845 1.50983 1.56559 1.58517 2.08445 2.43840 2.52744 2.79381 3.28842 3.43453 3.54919 3.58196 3.83456 3.94754 3.98231 4.09555 4.19650 4.23019 4.35746 4.41799 4.45240 4.48394 4.60759 4.69001 4.84267 4.91365 4.94082 4.97163 5.01027 5.11983 5.18015 5.19345 5.24295 5.30899 5.42804 5.56246 5.62994 5.72562 5.91849 6.30506 6.50831 6.80249 7.12243 7.14797 7.83753 8.27743 9.20890 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.035566 B = 0.002834 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.089686 B = 9879.024241 C =10229.069498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.602 5.602 3 C -0.269 4.269 4 H 0.072 0.928 5 C -0.051 4.051 6 N -0.937 5.937 7 Si 0.972 3.028 8 H -0.274 1.274 9 H -0.293 1.293 10 H -0.281 1.281 11 C 0.170 3.830 12 H 0.074 0.926 13 C -0.141 4.141 14 C 0.139 3.861 15 N -0.602 5.602 16 C 0.608 3.392 17 O -0.589 6.589 18 C -0.083 4.083 19 C 0.058 3.942 20 N -0.477 5.477 21 C 0.182 3.818 22 N -0.479 5.479 23 C -0.041 4.041 24 C -0.115 4.115 25 C 0.090 3.910 26 C 0.098 3.902 27 H 0.011 0.989 28 H 0.024 0.976 29 H 0.019 0.981 30 H 0.249 0.751 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.197 0.803 36 H 0.107 0.893 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.138 0.862 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.059 0.941 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.488 -30.515 -1.201 31.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.323 5.323 3 C -0.398 4.398 4 H 0.090 0.910 5 C -0.246 4.246 6 N -0.583 5.583 7 Si 0.800 3.200 8 H -0.200 1.200 9 H -0.219 1.219 10 H -0.208 1.208 11 C 0.060 3.940 12 H 0.092 0.908 13 C -0.181 4.181 14 C 0.016 3.984 15 N -0.334 5.334 16 C 0.398 3.602 17 O -0.470 6.470 18 C -0.212 4.212 19 C -0.082 4.082 20 N -0.158 5.158 21 C -0.083 4.083 22 N -0.200 5.200 23 C -0.080 4.080 24 C -0.152 4.152 25 C -0.029 4.029 26 C -0.027 4.027 27 H 0.029 0.971 28 H 0.042 0.958 29 H 0.038 0.962 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.214 0.786 36 H 0.126 0.874 37 H 0.132 0.868 38 H 0.113 0.887 39 H 0.156 0.844 40 H 0.128 0.872 41 H 0.130 0.870 42 H 0.077 0.923 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.287 -29.906 -1.072 30.578 hybrid contribution 0.115 1.158 1.037 1.559 sum 6.401 -28.748 -0.035 29.452 Atomic orbital electron populations 1.20512 0.82445 0.95556 0.97901 1.43990 1.02142 1.00750 1.85430 1.19551 0.96965 0.86037 1.37281 0.90972 1.25735 0.98317 1.01627 0.98887 1.70238 1.18305 1.27280 1.42488 0.85273 0.77657 0.79281 0.77790 1.19996 1.21888 1.20753 1.21481 0.95773 0.84831 0.91880 0.90756 1.23112 1.01985 0.93576 0.99437 1.21875 1.02371 0.96377 0.77752 1.48256 1.67930 1.08454 1.08711 1.16948 0.75984 0.82753 0.84514 1.90733 1.56150 1.84636 1.15517 1.20191 1.16640 0.93889 0.90434 1.22304 1.03076 0.85670 0.97163 1.46724 1.50159 1.11325 1.07629 1.25558 1.02777 0.91051 0.88954 1.70253 1.19952 1.11871 1.17877 1.20992 1.05863 0.86945 0.94186 1.22826 1.05358 0.96555 0.90497 1.22979 1.04117 0.73925 1.01846 1.22685 1.00185 0.80425 0.99357 0.97098 0.95811 0.96209 0.94158 0.91612 0.89816 0.90560 0.90961 0.78567 0.87428 0.86789 0.88675 0.84419 0.87208 0.87007 0.92263 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.31 7.59 127.77 0.97 10.27 16 2 N -0.60 -31.30 2.96 -695.03 -2.06 -33.36 16 3 C -0.27 -15.15 9.65 84.03 0.81 -14.34 16 4 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 5 C -0.05 -2.88 5.12 84.86 0.43 -2.45 16 6 N -0.94 -56.05 10.51 21.65 0.23 -55.82 16 7 Si 0.97 46.04 29.57 68.60 2.03 48.07 16 8 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 9 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 10 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 11 C 0.17 7.37 3.54 46.39 0.16 7.54 16 12 H 0.07 3.26 7.94 -2.39 -0.02 3.24 16 13 C -0.14 -5.27 6.51 31.78 0.21 -5.07 16 14 C 0.14 4.70 5.52 86.73 0.48 5.18 16 15 N -0.60 -23.12 3.33 -815.77 -2.71 -25.83 16 16 C 0.61 23.55 7.84 86.64 0.68 24.23 16 17 O -0.59 -25.78 17.14 -4.09 -0.07 -25.85 16 18 C -0.08 -2.65 6.81 40.50 0.28 -2.37 16 19 C 0.06 1.41 11.75 83.63 0.98 2.40 16 20 N -0.48 -8.10 3.55 -508.26 -1.80 -9.90 16 21 C 0.18 3.61 8.58 138.18 1.18 4.79 16 22 N -0.48 -13.81 8.77 -175.93 -1.54 -15.35 16 23 C -0.04 -0.31 6.85 30.65 0.21 -0.10 16 24 C -0.11 -0.07 7.16 31.58 0.23 0.15 16 25 C 0.09 0.44 7.78 86.74 0.67 1.11 16 26 C 0.10 4.12 6.46 86.86 0.56 4.68 16 27 H 0.01 0.59 7.42 -2.38 -0.02 0.58 16 28 H 0.02 1.08 6.33 -2.39 -0.02 1.07 16 29 H 0.02 1.09 7.13 -2.38 -0.02 1.07 16 30 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 31 H 0.07 2.58 7.08 -2.39 -0.02 2.56 16 32 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 33 H 0.08 2.48 7.63 -2.39 -0.02 2.47 16 34 H 0.07 2.37 7.74 -2.38 -0.02 2.36 16 35 H 0.20 4.06 8.06 -2.91 -0.02 4.03 16 36 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 39 H 0.14 -0.76 8.14 -2.39 -0.02 -0.78 16 40 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 41 H 0.11 0.18 8.14 -2.38 -0.02 0.16 16 42 H 0.06 2.60 8.04 -2.39 -0.02 2.58 16 43 H 0.06 2.55 6.33 -2.39 -0.02 2.53 16 Total: -1.00 -78.39 345.12 2.94 -75.46 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: 1.01 Total: 6.56 kcal Atomic # 6 Polarization: 28.17 SS G_CDS: 7.86 Total: 36.03 kcal Atomic # 7 Polarization: -132.37 SS G_CDS: -7.89 Total: -140.26 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.07 Total: -25.85 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -78.39 2.94 -75.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971558834.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.127 kcal (2) G-P(sol) polarization free energy of solvation -78.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds