Wall clock time and date at job start Tue Mar 31 2020 04:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46500 * 119.99607 * 2 1 4 4 C 1.39070 * 120.00360 * 179.97438 * 2 1 3 5 5 C 1.39442 * 120.40221 * 174.33216 * 4 2 1 6 6 C 1.38227 * 118.43264 * 179.72922 * 5 4 2 7 7 C 1.39538 * 119.14923 * 0.50893 * 6 5 4 8 8 C 1.47838 * 119.63174 * 179.75048 * 7 6 5 9 9 O 1.21563 * 120.00216 * 359.72998 * 8 7 6 10 10 N 1.34784 * 120.00068 * 179.72705 * 8 7 6 11 11 C 1.46497 * 119.99894 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.46494 * 179.97438 * 11 10 8 13 13 H 1.08997 * 112.74528 * 303.76032 * 12 11 10 14 14 C 1.53503 * 113.46451 * 172.94165 * 12 11 10 15 15 C 1.53492 * 83.34478 * 219.15549 * 14 12 11 16 16 N 1.47067 * 113.46599 * 74.51088 * 12 11 10 17 17 C 1.36942 * 136.05942 * 321.85999 * 16 12 11 18 18 H 1.07995 * 119.99361 * 0.02562 * 17 16 12 19 19 C 1.38809 * 119.99911 * 180.02562 * 17 16 12 20 20 N 1.31610 * 120.00404 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99493 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47361 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47201 * 120.00109 * 21 19 17 24 24 H 1.48499 * 109.46823 * 239.99724 * 21 19 17 25 25 N 1.32833 * 120.73075 * 359.47557 * 7 6 5 26 26 C 1.31323 * 121.71241 * 0.25658 * 25 7 6 27 27 H 1.08997 * 109.46607 * 185.06234 * 1 2 3 28 28 H 1.09001 * 109.46928 * 305.05651 * 1 2 3 29 29 H 1.08997 * 109.46908 * 65.06008 * 1 2 3 30 30 H 1.09006 * 109.47082 * 269.99872 * 3 2 1 31 31 H 1.08994 * 109.47673 * 29.99653 * 3 2 1 32 32 H 1.09001 * 109.47430 * 150.00103 * 3 2 1 33 33 H 1.08005 * 120.78599 * 359.97438 * 5 4 2 34 34 H 1.07991 * 120.42628 * 180.25920 * 6 5 4 35 35 H 0.97002 * 119.99229 * 359.72887 * 10 8 7 36 36 H 1.08998 * 109.47544 * 299.99932 * 11 10 8 37 37 H 1.09003 * 109.46791 * 60.00599 * 11 10 8 38 38 H 1.09000 * 114.20899 * 332.74226 * 14 12 11 39 39 H 1.09001 * 114.20373 * 105.56814 * 14 12 11 40 40 H 1.09001 * 113.47054 * 271.28588 * 15 14 12 41 41 H 1.09006 * 113.47354 * 140.84869 * 15 14 12 42 42 H 0.97008 * 120.00387 * 180.02562 * 20 19 17 43 43 H 1.08005 * 119.60996 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1605 -1.2043 0.0005 5 6 3.5498 -1.2170 -0.1182 6 6 4.2001 -2.4367 -0.1073 7 6 3.4487 -3.6066 0.0106 8 6 4.1329 -4.9171 0.0179 9 8 5.3431 -4.9716 -0.0834 10 7 3.4149 -6.0515 0.1369 11 6 4.0928 -7.3502 0.1436 12 6 3.0560 -8.4658 0.2899 13 1 2.4347 -8.3499 1.1778 14 6 3.6475 -9.8739 0.1356 15 6 2.3390 -10.1469 -0.6189 16 7 2.2838 -8.7122 -0.9373 17 6 1.7483 -7.9438 -1.9363 18 1 1.8657 -6.8705 -1.9138 19 6 1.0546 -8.5445 -2.9778 20 7 0.9119 -9.8526 -3.0055 21 14 0.3247 -7.4963 -4.3409 22 1 0.6229 -6.0654 -4.0787 23 1 0.9168 -7.8952 -5.6431 24 1 -1.1463 -7.6950 -4.3844 25 7 2.1261 -3.5555 0.1218 26 6 1.4768 -2.4140 0.1204 27 1 -0.3632 -1.0237 0.0907 28 1 -0.3633 0.5903 0.8412 29 1 -0.3633 0.4333 -0.9318 30 1 2.3791 1.5834 -1.0277 31 1 1.6084 2.0284 0.5137 32 1 3.1499 1.1386 0.5138 33 1 4.1050 -0.2954 -0.2125 34 1 5.2756 -2.4838 -0.1929 35 1 2.4496 -6.0078 0.2217 36 1 4.6378 -7.4804 -0.7914 37 1 4.7908 -7.3914 0.9799 38 1 4.5404 -9.9178 -0.4879 39 1 3.7460 -10.4223 1.0725 40 1 1.5266 -10.4798 0.0272 41 1 2.4677 -10.7815 -1.4958 42 1 0.4274 -10.2724 -3.7335 43 1 0.4007 -2.4120 0.2132 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039064718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:16:01 Heat of formation + Delta-G solvation = 77.366980 kcal Electronic energy + Delta-G solvation = -24534.722985 eV Core-core repulsion = 21003.562608 eV Total energy + Delta-G solvation = -3531.160377 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.59926 -39.01908 -37.97253 -36.83979 -33.97357 -32.37630 -32.11768 -30.76864 -28.79138 -28.02383 -27.61164 -25.60512 -23.39641 -23.38847 -22.57423 -21.50802 -20.18857 -19.21155 -18.11995 -17.27420 -16.78363 -16.42178 -15.60962 -15.33310 -15.20122 -15.04417 -14.57284 -14.40586 -14.20875 -13.80695 -13.54278 -13.43665 -13.16516 -12.96848 -12.77209 -12.56759 -12.38602 -12.01776 -11.79978 -11.45821 -11.04031 -10.91191 -10.71875 -10.59523 -10.49001 -10.01520 -9.82176 -9.74271 -9.67147 -9.44168 -9.09526 -8.74383 -8.43200 -7.65490 -6.82132 -5.69526 -3.01308 0.90498 1.25262 2.67567 3.07269 3.42932 3.49088 3.51510 3.65199 4.08960 4.29004 4.50610 4.52540 4.64456 4.71880 4.88961 4.99344 5.03911 5.16240 5.21562 5.26658 5.30872 5.36946 5.48203 5.63603 5.65466 5.79130 5.81466 6.00915 6.05358 6.19555 6.31925 6.40950 6.48202 6.67231 6.72654 6.81337 6.98243 7.03445 7.31018 7.46831 7.66058 7.81814 8.05584 8.16589 8.69934 9.11870 9.78151 10.70445 11.47955 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.014015 B = 0.003979 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.335370 B = 7034.527405 C = 8403.117692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.626 5.626 3 C 0.090 3.910 4 C 0.182 3.818 5 C -0.171 4.171 6 C -0.059 4.059 7 C 0.019 3.981 8 C 0.571 3.429 9 O -0.555 6.555 10 N -0.694 5.694 11 C 0.120 3.880 12 C 0.127 3.873 13 H 0.049 0.951 14 C -0.161 4.161 15 C 0.151 3.849 16 N -0.601 5.601 17 C -0.208 4.208 18 H 0.083 0.917 19 C -0.009 4.009 20 N -0.920 5.920 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 N -0.410 5.410 26 C 0.028 3.972 27 H 0.082 0.918 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.138 0.862 34 H 0.146 0.854 35 H 0.413 0.587 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.058 0.942 40 H 0.024 0.976 41 H 0.072 0.928 42 H 0.251 0.749 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.490 19.601 9.114 21.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.337 5.337 3 C -0.053 4.053 4 C 0.076 3.924 5 C -0.201 4.201 6 C -0.080 4.080 7 C -0.120 4.120 8 C 0.356 3.644 9 O -0.434 6.434 10 N -0.343 5.343 11 C -0.004 4.004 12 C 0.019 3.981 13 H 0.066 0.934 14 C -0.200 4.200 15 C 0.026 3.974 16 N -0.327 5.327 17 C -0.335 4.335 18 H 0.101 0.899 19 C -0.205 4.205 20 N -0.568 5.568 21 Si 0.737 3.263 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 N -0.120 5.120 26 C -0.139 4.139 27 H 0.100 0.900 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.155 0.845 34 H 0.164 0.836 35 H 0.249 0.751 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.042 0.958 41 H 0.090 0.910 42 H 0.061 0.939 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 1.613 18.963 8.794 20.965 hybrid contribution -0.716 1.492 -0.860 1.865 sum 0.898 20.455 7.934 21.958 Atomic orbital electron populations 1.21812 0.78817 1.03629 1.01528 1.46206 1.05469 1.03001 1.78988 1.21689 0.97300 0.84738 1.01557 1.19099 0.92288 0.87380 0.93628 1.21036 0.92167 0.98794 1.08111 1.21858 1.01766 0.90952 0.93443 1.20929 0.89515 0.94269 1.07314 1.17737 0.86339 0.83354 0.76956 1.90732 1.13476 1.87246 1.51961 1.45816 1.11839 1.05356 1.71285 1.21845 0.95624 0.81430 1.01545 1.22420 0.91647 0.92434 0.91553 0.93397 1.23661 1.00075 0.96293 0.99956 1.22028 0.90795 0.88173 0.96437 1.45706 1.63272 1.03358 1.20314 1.18972 1.27103 0.89779 0.97651 0.89944 1.24743 1.01077 0.95825 0.98845 1.69838 1.46259 1.07690 1.32999 0.86111 0.78602 0.79397 0.82148 1.20479 1.21825 1.21846 1.67415 1.08887 1.28754 1.06941 1.22450 1.00197 0.85748 1.05476 0.89950 0.92108 0.92411 0.92993 0.91179 0.91144 0.84476 0.83595 0.75090 0.90997 0.92204 0.90195 0.92362 0.95788 0.90995 0.93869 0.82297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.53 10.63 59.85 0.64 1.17 16 2 N -0.63 -5.25 3.39 -187.39 -0.64 -5.88 16 3 C 0.09 0.51 10.12 59.85 0.61 1.12 16 4 C 0.18 2.05 6.55 -83.67 -0.55 1.50 16 5 C -0.17 -1.92 9.24 -39.14 -0.36 -2.28 16 6 C -0.06 -0.82 9.62 -39.10 -0.38 -1.19 16 7 C 0.02 0.32 6.74 -83.02 -0.56 -0.24 16 8 C 0.57 11.05 7.80 -12.33 -0.10 10.96 16 9 O -0.56 -11.78 16.31 5.31 0.09 -11.69 16 10 N -0.69 -13.50 5.32 -61.25 -0.33 -13.83 16 11 C 0.12 2.34 5.52 -4.04 -0.02 2.32 16 12 C 0.13 2.58 4.10 -72.39 -0.30 2.29 16 13 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 14 C -0.16 -3.03 8.03 -26.22 -0.21 -3.25 16 15 C 0.15 3.57 7.39 -8.50 -0.06 3.50 16 16 N -0.60 -15.23 3.65 -176.98 -0.65 -15.87 16 17 C -0.21 -5.81 10.55 -15.06 -0.16 -5.97 16 18 H 0.08 2.28 7.51 -52.49 -0.39 1.88 16 19 C -0.01 -0.25 5.50 -17.44 -0.10 -0.35 16 20 N -0.92 -27.66 11.51 55.49 0.64 -27.02 16 21 Si 0.91 22.81 29.55 -169.99 -5.02 17.79 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 N -0.41 -6.65 9.52 -9.63 -0.09 -6.74 16 26 C 0.03 0.36 10.48 -17.31 -0.18 0.18 16 27 H 0.08 0.52 5.32 -51.93 -0.28 0.24 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.28 8.07 -51.93 -0.42 -0.14 16 32 H 0.07 0.37 6.48 -51.93 -0.34 0.04 16 33 H 0.14 1.14 6.41 -52.48 -0.34 0.80 16 34 H 0.15 1.91 7.63 -52.49 -0.40 1.51 16 35 H 0.41 8.13 7.70 -40.82 -0.31 7.82 16 36 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.08 1.50 8.12 -51.93 -0.42 1.07 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 1.88 7.12 -51.93 -0.37 1.51 16 42 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.16 1.67 5.74 -52.48 -0.30 1.37 16 LS Contribution 356.41 15.07 5.37 5.37 Total: -1.00 -34.42 356.41 -8.44 -42.86 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -6.09 Total: 5.27 kcal Atomic # 6 Polarization: 11.48 SS G_CDS: -1.73 Total: 9.75 kcal Atomic # 7 Polarization: -68.29 SS G_CDS: -1.06 Total: -69.35 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.09 Total: -11.69 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.42 -8.44 -42.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039064718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.229 kcal (2) G-P(sol) polarization free energy of solvation -34.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds