Wall clock time and date at job start Tue Mar 31 2020 04:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46500 * 119.99607 * 2 1 4 4 C 1.39070 * 120.00360 * 179.97438 * 2 1 3 5 5 C 1.39442 * 120.40221 * 174.33216 * 4 2 1 6 6 C 1.38227 * 118.43264 * 179.72922 * 5 4 2 7 7 C 1.39538 * 119.14923 * 0.50893 * 6 5 4 8 8 C 1.47838 * 119.63174 * 179.75048 * 7 6 5 9 9 O 1.21563 * 120.00216 * 359.72998 * 8 7 6 10 10 N 1.34784 * 120.00068 * 179.72705 * 8 7 6 11 11 C 1.46497 * 119.99894 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.46494 * 179.97438 * 11 10 8 13 13 H 1.08997 * 112.74528 * 303.76032 * 12 11 10 14 14 C 1.53503 * 113.46451 * 172.94165 * 12 11 10 15 15 C 1.53492 * 83.34478 * 219.15549 * 14 12 11 16 16 N 1.47067 * 113.46599 * 74.51088 * 12 11 10 17 17 C 1.36942 * 136.05942 * 321.85999 * 16 12 11 18 18 H 1.07995 * 119.99361 * 0.02562 * 17 16 12 19 19 C 1.38809 * 119.99911 * 180.02562 * 17 16 12 20 20 N 1.31610 * 120.00404 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99493 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47361 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47201 * 120.00109 * 21 19 17 24 24 H 1.48499 * 109.46823 * 239.99724 * 21 19 17 25 25 N 1.32833 * 120.73075 * 359.47557 * 7 6 5 26 26 C 1.31323 * 121.71241 * 0.25658 * 25 7 6 27 27 H 1.08997 * 109.46607 * 185.06234 * 1 2 3 28 28 H 1.09001 * 109.46928 * 305.05651 * 1 2 3 29 29 H 1.08997 * 109.46908 * 65.06008 * 1 2 3 30 30 H 1.09006 * 109.47082 * 269.99872 * 3 2 1 31 31 H 1.08994 * 109.47673 * 29.99653 * 3 2 1 32 32 H 1.09001 * 109.47430 * 150.00103 * 3 2 1 33 33 H 1.08005 * 120.78599 * 359.97438 * 5 4 2 34 34 H 1.07991 * 120.42628 * 180.25920 * 6 5 4 35 35 H 0.97002 * 119.99229 * 359.72887 * 10 8 7 36 36 H 1.08998 * 109.47544 * 299.99932 * 11 10 8 37 37 H 1.09003 * 109.46791 * 60.00599 * 11 10 8 38 38 H 1.09000 * 114.20899 * 332.74226 * 14 12 11 39 39 H 1.09001 * 114.20373 * 105.56814 * 14 12 11 40 40 H 1.09001 * 113.47054 * 271.28588 * 15 14 12 41 41 H 1.09006 * 113.47354 * 140.84869 * 15 14 12 42 42 H 0.97008 * 120.00387 * 180.02562 * 20 19 17 43 43 H 1.08005 * 119.60996 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1605 -1.2043 0.0005 5 6 3.5498 -1.2170 -0.1182 6 6 4.2001 -2.4367 -0.1073 7 6 3.4487 -3.6066 0.0106 8 6 4.1329 -4.9171 0.0179 9 8 5.3431 -4.9716 -0.0834 10 7 3.4149 -6.0515 0.1369 11 6 4.0928 -7.3502 0.1436 12 6 3.0560 -8.4658 0.2899 13 1 2.4347 -8.3499 1.1778 14 6 3.6475 -9.8739 0.1356 15 6 2.3390 -10.1469 -0.6189 16 7 2.2838 -8.7122 -0.9373 17 6 1.7483 -7.9438 -1.9363 18 1 1.8657 -6.8705 -1.9138 19 6 1.0546 -8.5445 -2.9778 20 7 0.9119 -9.8526 -3.0055 21 14 0.3247 -7.4963 -4.3409 22 1 0.6229 -6.0654 -4.0787 23 1 0.9168 -7.8952 -5.6431 24 1 -1.1463 -7.6950 -4.3844 25 7 2.1261 -3.5555 0.1218 26 6 1.4768 -2.4140 0.1204 27 1 -0.3632 -1.0237 0.0907 28 1 -0.3633 0.5903 0.8412 29 1 -0.3633 0.4333 -0.9318 30 1 2.3791 1.5834 -1.0277 31 1 1.6084 2.0284 0.5137 32 1 3.1499 1.1386 0.5138 33 1 4.1050 -0.2954 -0.2125 34 1 5.2756 -2.4838 -0.1929 35 1 2.4496 -6.0078 0.2217 36 1 4.6378 -7.4804 -0.7914 37 1 4.7908 -7.3914 0.9799 38 1 4.5404 -9.9178 -0.4879 39 1 3.7460 -10.4223 1.0725 40 1 1.5266 -10.4798 0.0272 41 1 2.4677 -10.7815 -1.4958 42 1 0.4274 -10.2724 -3.7335 43 1 0.4007 -2.4120 0.2132 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039064718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:16:00 Heat of formation + Delta-G solvation = 53.033418 kcal Electronic energy + Delta-G solvation = -24535.778167 eV Core-core repulsion = 21003.562608 eV Total energy + Delta-G solvation = -3532.215559 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.66237 -40.45763 -39.58899 -37.70755 -35.52173 -34.23660 -33.33495 -31.76399 -29.95460 -29.34926 -29.15989 -26.55652 -25.38233 -24.35585 -23.87772 -22.76639 -21.53004 -20.96523 -19.40992 -18.48661 -18.08698 -17.70207 -17.10499 -16.65218 -16.39341 -16.16731 -16.03965 -15.72196 -15.46430 -15.22577 -14.91764 -14.71877 -14.32099 -14.24272 -13.63219 -13.53774 -13.37134 -13.31129 -12.99956 -12.98672 -12.71057 -12.61882 -12.57866 -12.29988 -11.85260 -11.61911 -11.46052 -11.37267 -10.99407 -10.84093 -10.66637 -10.47779 -9.98890 -8.87451 -8.45080 -7.86673 -5.17682 -0.17042 0.29669 1.41541 1.42653 1.52494 1.78952 2.00797 2.26437 2.47982 2.93902 3.26641 3.35459 3.47356 3.70342 3.73569 3.92922 4.04635 4.12051 4.17615 4.26571 4.35830 4.41719 4.52187 4.64413 4.70677 4.71729 4.74175 4.82607 4.87842 4.90469 4.99296 5.06545 5.08040 5.12514 5.34789 5.38215 5.49076 5.61076 5.75827 5.98972 6.07719 6.18994 6.51708 6.90386 6.96765 7.24245 7.65119 8.64987 9.31047 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.014015 B = 0.003979 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.335370 B = 7034.527405 C = 8403.117692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.619 5.619 3 C 0.080 3.920 4 C 0.197 3.803 5 C -0.170 4.170 6 C -0.057 4.057 7 C -0.024 4.024 8 C 0.567 3.433 9 O -0.584 6.584 10 N -0.698 5.698 11 C 0.128 3.872 12 C 0.131 3.869 13 H 0.066 0.934 14 C -0.131 4.131 15 C 0.144 3.856 16 N -0.629 5.629 17 C -0.203 4.203 18 H 0.080 0.920 19 C -0.069 4.069 20 N -0.953 5.953 21 Si 0.966 3.034 22 H -0.273 1.273 23 H -0.295 1.295 24 H -0.289 1.289 25 N -0.435 5.435 26 C 0.015 3.985 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.171 0.829 34 H 0.147 0.853 35 H 0.410 0.590 36 H 0.044 0.956 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.102 0.898 40 H 0.023 0.977 41 H 0.037 0.963 42 H 0.245 0.755 43 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.179 22.625 10.214 24.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.327 5.327 3 C -0.062 4.062 4 C 0.087 3.913 5 C -0.200 4.200 6 C -0.079 4.079 7 C -0.161 4.161 8 C 0.355 3.645 9 O -0.465 6.465 10 N -0.347 5.347 11 C 0.004 3.996 12 C 0.025 3.975 13 H 0.083 0.917 14 C -0.170 4.170 15 C 0.018 3.982 16 N -0.355 5.355 17 C -0.332 4.332 18 H 0.097 0.903 19 C -0.262 4.262 20 N -0.603 5.603 21 Si 0.796 3.204 22 H -0.198 1.198 23 H -0.222 1.222 24 H -0.216 1.216 25 N -0.146 5.146 26 C -0.153 4.153 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.111 0.889 32 H 0.095 0.905 33 H 0.188 0.812 34 H 0.165 0.835 35 H 0.246 0.754 36 H 0.063 0.937 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.120 0.880 40 H 0.041 0.959 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 1.304 22.039 9.925 24.206 hybrid contribution -0.703 0.767 -1.129 1.535 sum 0.601 22.806 8.796 24.451 Atomic orbital electron populations 1.22039 0.77477 1.04057 1.03071 1.46592 1.06577 1.02881 1.76619 1.21964 0.97877 0.83770 1.02550 1.19176 0.92498 0.88047 0.91594 1.21306 0.92363 0.98916 1.07365 1.21924 1.01800 0.91147 0.93019 1.20610 0.90177 0.93591 1.11764 1.18202 0.86157 0.84275 0.75891 1.90687 1.14585 1.87850 1.53421 1.45833 1.11664 1.05520 1.71675 1.21681 0.95416 0.81530 1.00989 1.22576 0.91263 0.93676 0.89983 0.91674 1.23475 0.97425 0.95091 1.01007 1.22053 0.93447 0.86919 0.95776 1.46022 1.63542 1.04326 1.21632 1.19199 1.25725 0.90010 0.98235 0.90260 1.25471 1.02526 0.96917 1.01246 1.70006 1.47640 1.09001 1.33607 0.85170 0.77700 0.78209 0.79313 1.19798 1.22245 1.21625 1.67283 1.08855 1.30633 1.07785 1.22840 1.01158 0.85737 1.05594 0.90264 0.89955 0.91278 0.92180 0.88921 0.90453 0.81210 0.83492 0.75374 0.93745 0.89964 0.90075 0.87999 0.95942 0.94401 0.94542 0.80385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.68 10.63 127.77 1.36 2.04 16 2 N -0.62 -8.15 3.39 -746.79 -2.53 -10.68 16 3 C 0.08 0.58 10.12 127.77 1.29 1.87 16 4 C 0.20 3.94 6.55 38.58 0.25 4.19 16 5 C -0.17 -3.43 9.24 22.56 0.21 -3.22 16 6 C -0.06 -1.56 9.62 22.58 0.22 -1.34 16 7 C -0.02 -0.80 6.74 41.85 0.28 -0.52 16 8 C 0.57 22.53 7.80 86.78 0.68 23.20 16 9 O -0.58 -25.43 16.31 -3.91 -0.06 -25.49 16 10 N -0.70 -27.65 5.32 -465.96 -2.48 -30.13 16 11 C 0.13 4.99 5.52 86.38 0.48 5.47 16 12 C 0.13 5.23 4.10 41.80 0.17 5.40 16 13 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 14 C -0.13 -4.75 8.03 30.93 0.25 -4.50 16 15 C 0.14 6.83 7.39 83.18 0.61 7.45 16 16 N -0.63 -32.28 3.65 -713.85 -2.61 -34.89 16 17 C -0.20 -11.59 10.55 84.03 0.89 -10.70 16 18 H 0.08 4.47 7.51 -2.91 -0.02 4.45 16 19 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 20 N -0.95 -58.94 11.51 21.65 0.25 -58.69 16 21 Si 0.97 47.95 29.55 68.60 2.03 49.98 16 22 H -0.27 -13.07 7.11 99.48 0.71 -12.37 16 23 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16 24 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 25 N -0.44 -14.13 9.52 -184.38 -1.76 -15.89 16 26 C 0.01 0.36 10.48 85.06 0.89 1.25 16 27 H 0.08 0.78 5.32 -2.39 -0.01 0.77 16 28 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.40 8.14 -2.38 -0.02 0.38 16 31 H 0.09 0.31 8.07 -2.39 -0.02 0.29 16 32 H 0.08 0.49 6.48 -2.39 -0.02 0.47 16 33 H 0.17 2.20 6.41 -2.91 -0.02 2.19 16 34 H 0.15 3.84 7.63 -2.92 -0.02 3.82 16 35 H 0.41 16.50 7.70 -92.71 -0.71 15.79 16 36 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 38 H 0.08 2.94 8.12 -2.39 -0.02 2.92 16 39 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 40 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.04 2.04 7.12 -2.38 -0.02 2.03 16 42 H 0.25 14.80 8.31 -92.70 -0.77 14.03 16 43 H 0.18 3.46 5.74 -2.91 -0.02 3.45 16 Total: -1.00 -77.17 356.41 1.20 -75.97 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: 0.32 Total: 22.82 kcal Atomic # 6 Polarization: 18.95 SS G_CDS: 8.04 Total: 27.00 kcal Atomic # 7 Polarization: -141.15 SS G_CDS: -9.13 Total: -150.28 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -0.06 Total: -25.49 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 2.03 Total: 49.98 kcal Total: -77.17 1.20 -75.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039064718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.004 kcal (2) G-P(sol) polarization free energy of solvation -77.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds