Wall clock time and date at job start Tue Mar 31 2020 04:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34230 * 116.99991 * 2 1 4 4 O 1.20824 * 119.99912 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99811 * 179.97438 * 3 2 1 6 6 N 1.46497 * 109.47102 * 179.97438 * 5 3 2 7 7 C 1.36933 * 120.00294 * 275.87904 * 6 5 3 8 8 H 1.07997 * 120.00138 * 146.90851 * 7 6 5 9 9 C 1.38817 * 120.00024 * 326.91784 * 7 6 5 10 10 N 1.31617 * 119.99474 * 335.77885 * 9 7 6 11 11 Si 1.86797 * 120.00179 * 155.78836 * 9 7 6 12 12 H 1.48500 * 109.47282 * 59.99595 * 11 9 7 13 13 H 1.48497 * 109.47304 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.46982 * 299.99652 * 11 9 7 15 15 S 1.65601 * 119.99743 * 95.88010 * 6 5 3 16 16 O 1.42097 * 104.27849 * 333.92800 * 15 6 5 17 17 O 1.42102 * 104.27691 * 206.06970 * 15 6 5 18 18 C 1.81397 * 104.44750 * 90.00066 * 15 6 5 19 19 C 1.53008 * 109.46980 * 179.97438 * 18 15 6 20 20 C 1.52997 * 109.46884 * 180.02562 * 19 18 15 21 21 C 1.53786 * 113.61607 * 85.86474 * 20 19 18 22 22 C 1.54056 * 86.98710 * 140.01593 * 21 20 19 23 23 C 1.53785 * 113.61250 * 183.47003 * 20 19 18 24 24 H 1.08991 * 109.47190 * 300.00654 * 1 2 3 25 25 H 1.09004 * 109.46698 * 60.00417 * 1 2 3 26 26 H 1.08996 * 109.47190 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47136 * 59.99956 * 5 3 2 28 28 H 1.09001 * 109.47137 * 299.99583 * 5 3 2 29 29 H 0.96999 * 119.99421 * 179.97438 * 10 9 7 30 30 H 1.09004 * 109.47536 * 60.00010 * 18 15 6 31 31 H 1.08997 * 109.47495 * 299.99686 * 18 15 6 32 32 H 1.08997 * 109.47257 * 59.99904 * 19 18 15 33 33 H 1.08998 * 109.46915 * 299.99631 * 19 18 15 34 34 H 1.09003 * 112.85309 * 314.66091 * 20 19 18 35 35 H 1.08996 * 113.61509 * 254.60839 * 21 20 19 36 36 H 1.08996 * 113.61309 * 25.51531 * 21 20 19 37 37 H 1.08994 * 113.62040 * 220.02137 * 22 21 20 38 38 H 1.09001 * 113.60984 * 89.11394 * 22 21 20 39 39 H 1.08998 * 113.61464 * 334.48220 * 23 20 19 40 40 H 1.09004 * 113.61529 * 105.30296 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9818 2.6797 -0.0002 7 6 4.0600 3.3700 -1.1802 8 1 3.8344 4.4258 -1.2041 9 6 4.4290 2.7125 -2.3458 10 7 5.1438 1.6093 -2.2808 11 14 3.9112 3.3936 -4.0063 12 1 4.4651 4.7611 -4.1749 13 1 4.4283 2.5141 -5.0852 14 1 2.4289 3.4476 -4.0787 15 16 4.3569 3.4329 1.4262 16 8 3.6156 2.7182 2.4054 17 8 4.1022 4.8079 1.1738 18 6 6.1351 3.1432 1.6370 19 6 6.6082 3.7992 2.9358 20 6 8.1082 3.5553 3.1133 21 6 8.9898 4.5922 2.3975 22 6 9.9049 4.5492 3.6361 23 6 8.6691 4.1040 4.4359 24 1 -0.3633 0.5139 0.8898 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 3.9565 0.7805 -0.8892 28 1 3.9557 0.7809 0.8909 29 1 5.4014 1.1497 -3.0953 30 1 6.6760 3.5744 0.7946 31 1 6.3259 2.0709 1.6807 32 1 6.0675 3.3684 3.7784 33 1 6.4175 4.8714 2.8917 34 1 8.3961 2.5236 2.9116 35 1 9.4616 4.2129 1.4910 36 1 8.4998 5.5546 2.2499 37 1 10.2870 5.5265 3.9309 38 1 10.6839 3.7892 3.5771 39 1 8.0916 4.9331 4.8446 40 1 8.8808 3.3308 5.1746 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349640468.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:47 Heat of formation + Delta-G solvation = -137.920707 kcal Electronic energy + Delta-G solvation = -24164.540604 eV Core-core repulsion = 20493.644096 eV Total energy + Delta-G solvation = -3670.896508 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.118 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -39.59256 -38.80540 -36.27472 -35.81623 -35.07725 -34.61725 -32.42399 -31.73163 -28.48247 -26.42454 -25.81335 -25.33880 -24.12528 -21.64242 -20.51325 -19.34628 -18.50413 -17.26562 -16.90850 -16.77509 -15.71482 -15.63080 -15.41866 -15.22245 -14.93966 -14.75087 -14.26179 -13.88331 -13.32781 -12.95673 -12.89055 -12.65802 -12.36813 -12.02107 -11.94647 -11.64350 -11.50281 -11.31885 -11.15468 -11.05676 -10.89208 -10.85372 -10.83205 -10.62132 -10.58084 -10.32624 -10.30458 -10.17314 -10.01633 -9.73958 -9.40974 -9.27141 -8.01377 -6.68321 -4.20541 1.46125 3.07713 3.13901 3.14539 3.23083 3.40882 3.89934 4.20717 4.61598 4.67560 4.72491 4.81291 4.91224 5.12742 5.24963 5.47463 5.49299 5.56632 5.60506 5.64303 5.65845 5.75304 5.82504 5.87601 5.89326 5.92024 5.93714 6.04282 6.10264 6.25136 6.42265 6.51625 6.59930 6.66110 6.92064 7.12461 7.32638 8.18520 8.59023 8.65142 9.05434 10.30329 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.014814 B = 0.005197 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.689922 B = 5386.864678 C = 6534.747547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.370 6.370 3 C 0.446 3.554 4 O -0.495 6.495 5 C 0.132 3.868 6 N -0.802 5.802 7 C -0.245 4.245 8 H 0.112 0.888 9 C 0.033 3.967 10 N -0.839 5.839 11 Si 0.923 3.077 12 H -0.266 1.266 13 H -0.281 1.281 14 H -0.269 1.269 15 S 2.505 3.495 16 O -0.999 6.999 17 O -0.972 6.972 18 C -0.647 4.647 19 C -0.097 4.097 20 C -0.101 4.101 21 C -0.139 4.139 22 C -0.143 4.143 23 C -0.142 4.142 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.092 0.908 27 H 0.149 0.851 28 H 0.097 0.903 29 H 0.278 0.722 30 H 0.121 0.879 31 H 0.111 0.889 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.346 -2.690 4.411 6.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.287 6.287 3 C 0.286 3.714 4 O -0.380 6.380 5 C 0.003 3.997 6 N -0.624 5.624 7 C -0.389 4.389 8 H 0.129 0.871 9 C -0.178 4.178 10 N -0.478 5.478 11 Si 0.749 3.251 12 H -0.190 1.190 13 H -0.206 1.206 14 H -0.194 1.194 15 S 2.607 3.393 16 O -0.989 6.989 17 O -0.963 6.963 18 C -0.769 4.769 19 C -0.136 4.136 20 C -0.121 4.121 21 C -0.177 4.177 22 C -0.180 4.180 23 C -0.179 4.179 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.110 0.890 27 H 0.165 0.835 28 H 0.115 0.885 29 H 0.088 0.912 30 H 0.139 0.861 31 H 0.130 0.870 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.674 -2.017 5.121 6.617 hybrid contribution 0.278 -0.069 -1.008 1.048 sum 3.953 -2.086 4.112 6.073 Atomic orbital electron populations 1.23090 0.78101 1.02548 1.02096 1.86521 1.22203 1.34865 1.85132 1.25080 0.93425 0.80927 0.71962 1.90594 1.66786 1.36312 1.44306 1.20820 0.85347 0.86295 1.07263 1.53031 1.69258 1.18431 1.21728 1.19710 1.39395 0.96604 0.83218 0.87081 1.25700 0.94288 0.96883 1.00969 1.69863 1.29559 1.17859 1.30504 0.86011 0.79854 0.79359 0.79913 1.19025 1.20570 1.19379 1.11542 0.77928 0.75314 0.74490 1.93378 1.69687 1.73797 1.62035 1.93392 1.84320 1.34305 1.84233 1.30923 1.33212 1.08518 1.04267 1.21226 0.96231 1.00462 0.95647 1.22521 0.94129 0.99368 0.96036 1.23045 0.97652 0.99739 0.97215 1.22850 0.96622 1.01193 0.97366 1.22993 0.97442 1.00870 0.96632 0.92432 0.92464 0.88964 0.83487 0.88529 0.91199 0.86063 0.87014 0.91432 0.91326 0.89165 0.91448 0.89955 0.91759 0.90464 0.90142 0.91709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.56 101.05 1.07 1.61 16 2 O -0.37 -7.11 10.57 -39.26 -0.41 -7.52 16 3 C 0.45 10.13 7.99 36.01 0.29 10.42 16 4 O -0.49 -12.69 16.06 -18.75 -0.30 -12.99 16 5 C 0.13 2.92 5.47 -5.19 -0.03 2.89 16 6 N -0.80 -19.28 2.32 -61.09 -0.14 -19.42 16 7 C -0.24 -6.16 8.95 -15.06 -0.13 -6.29 16 8 H 0.11 2.90 7.31 -52.49 -0.38 2.51 16 9 C 0.03 0.77 4.98 -17.43 -0.09 0.68 16 10 N -0.84 -19.42 11.27 55.49 0.63 -18.79 16 11 Si 0.92 18.96 29.62 -169.99 -5.03 13.93 16 12 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 13 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 14 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 15 S 2.51 58.00 5.33 -107.50 -0.57 57.43 16 16 O -1.00 -24.73 16.97 -57.54 -0.98 -25.71 16 17 O -0.97 -25.40 16.85 -57.54 -0.97 -26.37 16 18 C -0.65 -12.03 6.17 37.16 0.23 -11.80 16 19 C -0.10 -1.59 5.05 -26.73 -0.13 -1.73 16 20 C -0.10 -1.40 3.64 -89.80 -0.33 -1.72 16 21 C -0.14 -1.79 7.65 -25.77 -0.20 -1.99 16 22 C -0.14 -1.55 8.09 -25.77 -0.21 -1.76 16 23 C -0.14 -1.65 7.64 -25.91 -0.20 -1.85 16 24 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 25 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 26 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.15 3.25 5.30 -51.93 -0.28 2.98 16 28 H 0.10 1.88 7.58 -51.93 -0.39 1.49 16 29 H 0.28 6.03 8.31 -40.82 -0.34 5.69 16 30 H 0.12 2.27 8.14 -51.92 -0.42 1.85 16 31 H 0.11 1.92 8.14 -51.93 -0.42 1.50 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.07 1.12 7.87 -51.93 -0.41 0.71 16 34 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.08 1.08 7.92 -51.93 -0.41 0.67 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 348.42 15.07 5.25 5.25 Total: -1.00 -30.78 348.42 -8.34 -39.13 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -6.08 Total: 6.61 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: 0.27 Total: -11.53 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.48 Total: -38.22 kcal Atomic # 8 Polarization: -69.93 SS G_CDS: -2.66 Total: -72.59 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Atomic # 16 Polarization: 58.00 SS G_CDS: -0.57 Total: 57.43 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.78 -8.34 -39.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349640468.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.795 kcal (2) G-P(sol) polarization free energy of solvation -30.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds