Wall clock time and date at job start Tue Mar 31 2020 04:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38043 * 126.29247 * 2 1 4 4 C 1.47433 * 126.41275 * 359.93596 * 3 2 1 5 5 O 1.21604 * 120.00316 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99971 * 180.02562 * 4 3 2 7 7 C 1.47319 * 135.89654 * 359.63754 * 6 4 3 8 8 C 1.52421 * 87.51367 * 154.09262 * 7 6 4 9 9 C 1.47319 * 135.89375 * 179.97438 * 6 4 3 10 10 C 1.53233 * 116.77176 * 268.24464 * 8 7 6 11 11 C 1.54816 * 103.52661 * 228.56001 * 10 8 7 12 12 O 1.44540 * 104.88537 * 23.74617 * 11 10 8 13 13 C 1.44750 * 105.53868 * 320.33214 * 12 11 10 14 14 C 1.41285 * 107.17448 * 179.97438 * 3 2 1 15 15 N 1.30449 * 108.01957 * 359.97438 * 14 3 2 16 16 N 1.34253 * 126.29324 * 179.68417 * 2 1 3 17 17 C 1.46506 * 125.75441 * 0.02562 * 16 2 1 18 18 C 1.50695 * 109.46939 * 89.99738 * 17 16 2 19 19 H 1.08005 * 120.00383 * 0.02562 * 18 17 16 20 20 C 1.37879 * 119.99926 * 180.02562 * 18 17 16 21 21 N 1.31512 * 119.99981 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00226 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47289 * 59.99429 * 22 20 18 24 24 H 1.48491 * 109.47322 * 179.97438 * 22 20 18 25 25 H 1.48507 * 109.46724 * 299.99926 * 22 20 18 26 26 H 1.09002 * 109.47152 * 90.00302 * 1 2 3 27 27 H 1.09001 * 109.46980 * 330.00402 * 1 2 3 28 28 H 1.09004 * 109.47113 * 210.00383 * 1 2 3 29 29 H 1.08996 * 113.52510 * 268.73223 * 7 6 4 30 30 H 1.09004 * 113.52520 * 39.35899 * 7 6 4 31 31 H 1.08998 * 113.53112 * 320.64610 * 9 6 4 32 32 H 1.09006 * 113.52697 * 91.20948 * 9 6 4 33 33 H 1.09005 * 110.60989 * 347.06605 * 10 8 7 34 34 H 1.09000 * 110.61645 * 109.89287 * 10 8 7 35 35 H 1.08999 * 110.35860 * 142.59424 * 11 10 8 36 36 H 1.09003 * 110.35478 * 264.89777 * 11 10 8 37 37 H 1.09001 * 110.44311 * 280.46634 * 13 12 11 38 38 H 1.09007 * 110.43895 * 157.95735 * 13 12 11 39 39 H 1.08000 * 125.99186 * 180.02562 * 14 3 2 40 40 H 1.08996 * 109.47234 * 210.00583 * 17 16 2 41 41 H 1.09008 * 109.46787 * 330.00275 * 17 16 2 42 42 H 0.97002 * 120.00289 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 -0.0013 5 8 0.6996 2.7878 -0.0021 6 7 2.7999 3.5107 -0.0017 7 6 4.2708 3.5928 0.0054 8 6 4.1320 4.9533 -0.6675 9 6 2.7639 4.9835 -0.0033 10 6 4.1504 4.9706 -2.1997 11 6 5.1687 6.0868 -2.5370 12 8 6.0152 6.1824 -1.3693 13 6 5.1289 6.0332 -0.2346 14 6 3.6590 0.6499 0.0006 15 7 3.6340 -0.6543 0.0015 16 7 2.3017 -1.0821 0.0060 17 6 1.8501 -2.4758 0.0131 18 6 1.6958 -2.9610 -1.4052 19 1 1.9127 -2.2978 -2.2296 20 6 1.2775 -4.2517 -1.6506 21 7 1.0138 -5.0595 -0.6468 22 14 1.0868 -4.8536 -3.4087 23 1 2.3934 -4.7607 -4.1081 24 1 0.6290 -6.2661 -3.4014 25 1 0.0869 -4.0122 -4.1141 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 0.8900 0.5138 28 1 -0.3633 -0.8900 0.5139 29 1 4.6989 3.6442 1.0065 30 1 4.7515 2.8422 -0.6221 31 1 1.9813 5.3990 -0.6381 32 1 2.7736 5.4201 0.9954 33 1 4.4895 4.0110 -2.5902 34 1 3.1638 5.2164 -2.5926 35 1 5.7585 5.8106 -3.4111 36 1 4.6527 7.0313 -2.7096 37 1 4.6105 6.9701 -0.0306 38 1 5.6863 5.7066 0.6434 39 1 4.5449 1.2677 0.0012 40 1 2.5845 -3.0930 0.5305 41 1 0.8912 -2.5443 0.5270 42 1 0.7199 -5.9677 -0.8194 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897863607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:19:14 Heat of formation + Delta-G solvation = 31.019021 kcal Electronic energy + Delta-G solvation = -24943.541799 eV Core-core repulsion = 21312.652961 eV Total energy + Delta-G solvation = -3630.888837 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.35632 -40.58111 -38.49944 -37.00265 -33.91430 -32.22410 -31.58755 -31.07237 -29.86704 -27.77310 -26.81598 -26.38288 -25.63953 -23.36663 -23.09677 -21.64815 -19.82676 -19.36378 -18.49033 -17.02869 -16.78937 -16.58355 -16.12163 -15.81760 -15.54031 -15.13053 -14.94773 -14.51283 -14.48548 -13.76143 -13.60856 -13.32531 -13.06834 -12.72192 -12.58002 -12.45144 -12.24884 -12.05923 -11.92364 -11.73257 -11.61235 -11.48687 -11.21898 -11.14055 -10.88029 -10.61798 -10.37904 -10.20748 -10.05222 -9.96640 -9.41199 -8.72631 -8.71704 -8.59410 -7.92413 -6.34524 -4.42561 2.15169 2.77483 2.81323 3.19231 3.23284 3.25638 3.38801 3.55920 3.80902 3.91622 4.22192 4.23363 4.46653 4.61742 4.81989 4.83576 5.00739 5.11679 5.13974 5.17271 5.22151 5.29612 5.33164 5.40892 5.42238 5.48375 5.52420 5.67393 5.69739 5.79852 5.83687 6.05189 6.12859 6.43114 6.44288 6.55800 6.79051 6.89522 7.15003 7.54622 7.75822 7.77241 7.83351 8.34944 8.54028 8.62761 9.24309 10.73679 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.022076 B = 0.003182 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.057911 B = 8796.054500 C = 9219.484922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.165 3.835 3 C -0.328 4.328 4 C 0.633 3.367 5 O -0.553 6.553 6 N -0.646 5.646 7 C 0.114 3.886 8 C -0.135 4.135 9 C 0.124 3.876 10 C -0.128 4.128 11 C 0.046 3.954 12 O -0.375 6.375 13 C 0.064 3.936 14 C 0.054 3.946 15 N -0.296 5.296 16 N -0.313 5.313 17 C 0.251 3.749 18 C -0.541 4.541 19 H 0.065 0.935 20 C 0.068 3.932 21 N -0.890 5.890 22 Si 0.908 3.092 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.273 1.273 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.098 0.902 39 H 0.177 0.823 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.852 20.837 0.826 21.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.028 3.972 3 C -0.343 4.343 4 C 0.428 3.572 5 O -0.432 6.432 6 N -0.382 5.382 7 C -0.009 4.009 8 C -0.136 4.136 9 C 0.001 3.999 10 C -0.165 4.165 11 C -0.031 4.031 12 O -0.293 6.293 13 C -0.013 4.013 14 C -0.133 4.133 15 N -0.116 5.116 16 N -0.090 5.090 17 C 0.134 3.866 18 C -0.579 4.579 19 H 0.083 0.917 20 C -0.136 4.136 21 N -0.527 5.527 22 Si 0.735 3.265 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.198 1.198 26 H 0.102 0.898 27 H 0.111 0.889 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.111 0.889 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.116 0.884 39 H 0.194 0.806 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.892 19.336 0.889 20.234 hybrid contribution -0.671 0.144 -0.887 1.121 sum 5.222 19.480 0.003 20.168 Atomic orbital electron populations 1.20571 0.86769 1.03778 1.03946 1.21458 0.94951 0.86495 0.94312 1.19547 0.93197 0.91968 1.29584 1.16848 0.83571 0.82792 0.74014 1.90704 1.16029 1.83939 1.52553 1.49334 1.07106 1.06033 1.75724 1.23062 0.82185 0.95161 1.00531 1.22753 0.97028 0.97126 0.96687 1.22683 0.95307 0.81623 1.00312 1.22565 1.00696 1.00618 0.92637 1.23516 0.92327 0.97585 0.89650 1.89191 1.30973 1.94158 1.14989 1.23133 0.90935 0.96780 0.90484 1.23974 0.96558 0.92542 1.00198 1.77151 0.98608 1.12272 1.23535 1.49380 1.02497 1.08290 1.48821 1.19856 0.96414 0.70850 0.99450 1.21208 1.47580 0.98163 0.90996 0.91728 1.24921 0.94407 0.95987 0.98298 1.69901 1.44384 1.07352 1.31071 0.86374 0.78887 0.77777 0.83453 1.19889 1.20842 1.19841 0.89809 0.88906 0.90781 0.89337 0.89584 0.90215 0.89767 0.89761 0.89819 0.88917 0.92153 0.91439 0.88433 0.80642 0.92489 0.92545 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.71 9.57 36.01 0.34 -1.36 16 2 C 0.17 3.44 7.01 -81.60 -0.57 2.87 16 3 C -0.33 -6.22 6.13 -105.07 -0.64 -6.86 16 4 C 0.63 11.07 8.06 -12.51 -0.10 10.97 16 5 O -0.55 -11.02 15.61 5.27 0.08 -10.94 16 6 N -0.65 -8.39 3.69 -186.59 -0.69 -9.08 16 7 C 0.11 1.08 6.38 -7.54 -0.05 1.03 16 8 C -0.13 -1.08 1.28 -155.04 -0.20 -1.28 16 9 C 0.12 1.16 7.95 -7.69 -0.06 1.10 16 10 C -0.13 -1.04 6.63 -25.65 -0.17 -1.21 16 11 C 0.05 0.34 7.67 38.11 0.29 0.63 16 12 O -0.37 -3.44 11.66 -35.23 -0.41 -3.86 16 13 C 0.06 0.44 7.11 37.27 0.26 0.70 16 14 C 0.05 0.97 11.14 -16.98 -0.19 0.79 16 15 N -0.30 -6.48 12.50 30.86 0.39 -6.09 16 16 N -0.31 -7.18 3.56 -57.77 -0.21 -7.38 16 17 C 0.25 6.30 5.97 -5.19 -0.03 6.27 16 18 C -0.54 -14.65 9.39 -34.44 -0.32 -14.98 16 19 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16 20 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 21 N -0.89 -24.65 13.29 55.43 0.74 -23.91 16 22 Si 0.91 20.84 29.54 -169.99 -5.02 15.82 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 27 H 0.09 1.64 6.50 -51.93 -0.34 1.30 16 28 H 0.07 1.32 7.04 -51.93 -0.37 0.96 16 29 H 0.09 0.68 8.01 -51.93 -0.42 0.26 16 30 H 0.09 0.83 6.02 -51.93 -0.31 0.52 16 31 H 0.08 0.77 7.94 -51.93 -0.41 0.36 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.75 7.88 -51.93 -0.41 0.35 16 34 H 0.08 0.68 7.85 -51.93 -0.41 0.27 16 35 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.10 0.55 7.88 -51.92 -0.41 0.14 16 39 H 0.18 2.42 5.21 -52.49 -0.27 2.15 16 40 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 41 H 0.06 1.40 7.01 -51.92 -0.36 1.04 16 42 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 347.21 15.07 5.23 5.23 Total: -1.00 -32.25 347.21 -7.21 -39.46 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -5.79 Total: 0.35 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -1.53 Total: 0.40 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: 0.23 Total: -46.46 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.33 Total: -14.80 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.25 -7.21 -39.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897863607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.481 kcal (2) G-P(sol) polarization free energy of solvation -32.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds