Wall clock time and date at job start Tue Mar 31 2020 03:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 119.99838 * 2 1 4 4 H 1.48504 * 109.47019 * 239.99858 * 3 2 1 5 5 H 1.48501 * 109.47341 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47252 * 119.99949 * 3 2 1 7 7 C 1.38815 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00025 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00000 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99705 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46695 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47084 * 305.00361 * 11 10 9 13 13 O 1.42901 * 109.46895 * 65.00270 * 11 10 9 14 14 C 1.52998 * 109.46910 * 184.99939 * 11 10 9 15 15 N 1.46503 * 109.47150 * 180.02562 * 14 11 10 16 16 C 1.34771 * 119.99706 * 180.02562 * 15 14 11 17 17 O 1.21274 * 120.00630 * 359.97438 * 16 15 14 18 18 C 1.50705 * 119.99404 * 179.97438 * 16 15 14 19 19 H 1.08993 * 110.26094 * 299.39780 * 18 16 15 20 20 C 1.54337 * 110.37662 * 177.28653 * 18 16 15 21 21 C 1.54364 * 102.39270 * 214.67443 * 20 18 16 22 22 C 1.51226 * 105.11808 * 26.29084 * 21 20 18 23 23 C 1.38746 * 130.69307 * 162.87747 * 22 21 20 24 24 C 1.38572 * 118.55566 * 180.02562 * 23 22 21 25 25 C 1.38234 * 118.99279 * 359.97438 * 24 23 22 26 26 N 1.31684 * 120.79945 * 0.25192 * 25 24 23 27 27 C 1.32303 * 122.02928 * 359.46809 * 26 25 24 28 28 H 0.97002 * 120.00292 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99433 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.46947 * 60.00170 * 10 9 7 31 31 H 1.08994 * 109.46982 * 299.99951 * 10 9 7 32 32 H 0.96694 * 114.00288 * 59.99320 * 13 11 10 33 33 H 1.09001 * 109.47166 * 59.99914 * 14 11 10 34 34 H 1.09000 * 109.47074 * 300.00010 * 14 11 10 35 35 H 0.96998 * 119.99661 * 0.02562 * 15 14 11 36 36 H 1.09008 * 110.82087 * 332.90295 * 20 18 16 37 37 H 1.08998 * 110.82017 * 96.25234 * 20 18 16 38 38 H 1.08996 * 110.31314 * 267.37681 * 21 20 18 39 39 H 1.09000 * 110.31020 * 145.19563 * 21 20 18 40 40 H 1.07995 * 120.71857 * 359.97438 * 23 22 21 41 41 H 1.08004 * 120.50299 * 179.97438 * 24 23 22 42 42 H 1.08002 * 119.59792 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0582 -3.6568 0.0027 11 6 1.0639 -4.8198 0.0031 12 1 0.3794 -4.7123 0.8446 13 8 0.3221 -4.8126 -1.2183 14 6 1.8247 -6.1411 0.1300 15 7 0.8727 -7.2547 0.1298 16 6 1.3186 -8.5223 0.2329 17 8 2.5078 -8.7413 0.3255 18 6 0.3393 -9.6678 0.2333 19 1 -0.3456 -9.5786 1.0764 20 6 1.0888 -11.0156 0.2927 21 6 0.1931 -11.9311 -0.5690 22 6 -0.5156 -11.0005 -1.5275 23 6 -1.1858 -11.2626 -2.7138 24 6 -1.7520 -10.2021 -3.4029 25 6 -1.6302 -8.9258 -2.8862 26 7 -0.9830 -8.7135 -1.7592 27 6 -0.4333 -9.6996 -1.0693 28 1 -0.4851 0.8400 -0.0004 29 1 0.3556 -2.3880 0.0023 30 1 2.6848 -3.7137 0.8928 31 1 2.6848 -3.7153 -0.8872 32 1 0.8684 -4.9045 -2.0108 33 1 2.3905 -6.1465 1.0616 34 1 2.5091 -6.2485 -0.7115 35 1 -0.0784 -7.0796 0.0554 36 1 2.0838 -10.9252 -0.1434 37 1 1.1486 -11.3808 1.3179 38 1 -0.5308 -12.4513 0.0582 39 1 0.8028 -12.6480 -1.1189 40 1 -1.2636 -12.2711 -3.0922 41 1 -2.2804 -10.3702 -4.3298 42 1 -2.0674 -8.0920 -3.4155 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497049880.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:19 Heat of formation + Delta-G solvation = -43.660862 kcal Electronic energy + Delta-G solvation = -24380.305049 eV Core-core repulsion = 20746.177848 eV Total energy + Delta-G solvation = -3634.127200 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.28995 -39.45888 -37.61219 -36.24381 -34.31799 -33.92025 -32.97629 -31.26466 -29.76535 -29.44467 -28.17861 -25.28151 -23.80906 -22.97481 -22.25460 -21.47362 -21.32388 -19.97299 -17.72189 -17.11140 -17.06001 -16.61132 -16.31007 -15.89144 -15.49200 -15.24185 -14.63153 -14.45346 -14.35092 -13.83803 -13.71844 -13.63737 -13.35940 -13.12751 -12.96244 -12.58295 -12.35331 -12.16173 -11.99645 -11.90427 -11.74139 -11.38049 -10.93516 -10.78303 -10.53731 -10.20318 -10.17525 -9.95691 -9.76655 -9.55058 -9.41852 -9.01138 -8.96555 -8.86553 -6.90824 -5.73311 -3.02824 0.75804 0.97857 2.56743 3.16081 3.46030 3.49823 3.50921 3.51665 3.63152 3.99431 4.40712 4.50794 4.57704 4.61961 4.66078 4.81983 4.85055 4.95403 4.99192 5.05531 5.15978 5.25092 5.33676 5.41973 5.48222 5.58710 5.63060 5.70282 5.82142 5.87345 5.87657 5.90252 6.02844 6.24708 6.37458 6.51771 6.56410 6.73398 7.59658 7.70550 7.71001 8.03862 8.25506 8.44940 9.56313 10.13525 10.49426 11.49043 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.025746 B = 0.002683 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.284711 B =10434.043006 C =11277.048857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.069 0.931 9 N -0.726 5.726 10 C 0.127 3.873 11 C 0.090 3.910 12 H 0.104 0.896 13 O -0.548 6.548 14 C 0.090 3.910 15 N -0.706 5.706 16 C 0.523 3.477 17 O -0.546 6.546 18 C -0.060 4.060 19 H 0.120 0.880 20 C -0.103 4.103 21 C -0.079 4.079 22 C -0.144 4.144 23 C -0.066 4.066 24 C -0.171 4.171 25 C 0.109 3.891 26 N -0.466 5.466 27 C 0.121 3.879 28 H 0.256 0.744 29 H 0.389 0.611 30 H 0.028 0.972 31 H 0.022 0.978 32 H 0.371 0.629 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.412 0.588 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.133 0.867 41 H 0.138 0.862 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.783 -27.812 -3.462 28.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.375 4.375 8 H 0.087 0.913 9 N -0.370 5.370 10 C -0.001 4.001 11 C 0.030 3.970 12 H 0.121 0.879 13 O -0.352 6.352 14 C -0.035 4.035 15 N -0.357 5.357 16 C 0.308 3.692 17 O -0.425 6.425 18 C -0.082 4.082 19 H 0.137 0.863 20 C -0.141 4.141 21 C -0.117 4.117 22 C -0.146 4.146 23 C -0.092 4.092 24 C -0.191 4.191 25 C -0.049 4.049 26 N -0.174 5.174 27 C -0.017 4.017 28 H 0.066 0.934 29 H 0.223 0.777 30 H 0.046 0.954 31 H 0.040 0.960 32 H 0.218 0.782 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.249 0.751 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.150 0.850 41 H 0.156 0.844 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -3.248 -26.872 -2.672 27.199 hybrid contribution 0.025 0.214 -0.847 0.874 sum -3.223 -26.658 -3.519 27.081 Atomic orbital electron populations 1.69668 1.05097 1.25759 1.57347 1.24758 0.95530 0.97701 1.02901 0.86253 0.78498 0.83488 0.77839 1.21273 1.21658 1.21254 1.19180 0.90961 0.84146 1.43169 0.91290 1.42237 1.06079 0.99393 1.89334 1.21206 0.93544 0.86645 0.98746 1.22364 0.94478 0.91695 0.88424 0.87862 1.86597 1.37261 1.96166 1.15193 1.22091 0.92302 0.86213 1.02886 1.45859 1.11742 1.05117 1.72978 1.20106 0.88964 0.83916 0.76261 1.90686 1.16733 1.84637 1.50401 1.20896 0.96300 0.95814 0.95228 0.86260 1.22284 0.99602 0.90786 1.01389 1.21014 0.97924 0.96943 0.95795 1.21416 0.99868 0.96933 0.96401 1.21062 0.95131 0.99842 0.93178 1.22139 1.01482 0.93967 1.01470 1.22725 0.94386 0.96471 0.91310 1.66838 1.07745 1.35669 1.07111 1.21381 0.95686 0.89409 0.95258 0.93442 0.77704 0.95450 0.95999 0.78207 0.90544 0.91340 0.75136 0.88766 0.89330 0.89605 0.89983 0.84955 0.84423 0.82120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.74 13.06 55.49 0.72 -28.01 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.74 29.55 -169.99 -5.02 17.72 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.81 5.55 -59.91 -0.33 -19.14 16 10 C 0.13 2.56 5.90 -4.04 -0.02 2.53 16 11 C 0.09 1.48 3.09 -26.73 -0.08 1.39 16 12 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 13 O -0.55 -9.26 13.03 -35.23 -0.46 -9.71 16 14 C 0.09 1.28 5.34 -4.04 -0.02 1.26 16 15 N -0.71 -9.41 5.22 -60.29 -0.31 -9.73 16 16 C 0.52 7.06 7.18 -10.99 -0.08 6.98 16 17 O -0.55 -9.03 15.52 5.56 0.09 -8.94 16 18 C -0.06 -0.61 3.26 -91.84 -0.30 -0.91 16 19 H 0.12 0.98 8.14 -51.93 -0.42 0.55 16 20 C -0.10 -0.85 6.33 -25.32 -0.16 -1.01 16 21 C -0.08 -0.52 6.77 -26.91 -0.18 -0.71 16 22 C -0.14 -1.28 6.16 -104.20 -0.64 -1.92 16 23 C -0.07 -0.50 10.17 -39.27 -0.40 -0.90 16 24 C -0.17 -1.30 10.12 -39.46 -0.40 -1.70 16 25 C 0.11 1.04 11.18 -17.62 -0.20 0.84 16 26 N -0.47 -5.49 9.59 -9.18 -0.09 -5.58 16 27 C 0.12 1.31 6.57 -82.03 -0.54 0.77 16 28 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.39 10.76 7.67 -40.82 -0.31 10.45 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.37 5.39 9.04 45.56 0.41 5.80 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.41 5.36 7.74 -40.82 -0.32 5.05 16 36 H 0.09 0.96 7.07 -51.92 -0.37 0.59 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 41 H 0.14 0.67 8.06 -52.48 -0.42 0.24 16 42 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 355.48 15.07 5.36 5.36 Total: -1.00 -35.20 355.48 -8.52 -43.72 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -5.20 Total: 15.27 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -3.27 Total: -0.95 kcal Atomic # 7 Polarization: -62.45 SS G_CDS: -0.01 Total: -62.46 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.37 Total: -18.66 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.20 -8.52 -43.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497049880.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.059 kcal (2) G-P(sol) polarization free energy of solvation -35.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds