Wall clock time and date at job start Tue Mar 31 2020 03:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 119.99838 * 2 1 4 4 H 1.48504 * 109.47019 * 239.99858 * 3 2 1 5 5 H 1.48501 * 109.47341 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47252 * 119.99949 * 3 2 1 7 7 C 1.38815 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00025 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00000 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99705 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46695 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47084 * 305.00361 * 11 10 9 13 13 O 1.42901 * 109.46895 * 65.00270 * 11 10 9 14 14 C 1.52998 * 109.46910 * 184.99939 * 11 10 9 15 15 N 1.46503 * 109.47150 * 180.02562 * 14 11 10 16 16 C 1.34771 * 119.99706 * 180.02562 * 15 14 11 17 17 O 1.21274 * 120.00630 * 359.97438 * 16 15 14 18 18 C 1.50705 * 119.99404 * 179.97438 * 16 15 14 19 19 H 1.08993 * 110.26094 * 299.39780 * 18 16 15 20 20 C 1.54337 * 110.37662 * 177.28653 * 18 16 15 21 21 C 1.54364 * 102.39270 * 214.67443 * 20 18 16 22 22 C 1.51226 * 105.11808 * 26.29084 * 21 20 18 23 23 C 1.38746 * 130.69307 * 162.87747 * 22 21 20 24 24 C 1.38572 * 118.55566 * 180.02562 * 23 22 21 25 25 C 1.38234 * 118.99279 * 359.97438 * 24 23 22 26 26 N 1.31684 * 120.79945 * 0.25192 * 25 24 23 27 27 C 1.32303 * 122.02928 * 359.46809 * 26 25 24 28 28 H 0.97002 * 120.00292 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99433 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.46947 * 60.00170 * 10 9 7 31 31 H 1.08994 * 109.46982 * 299.99951 * 10 9 7 32 32 H 0.96694 * 114.00288 * 59.99320 * 13 11 10 33 33 H 1.09001 * 109.47166 * 59.99914 * 14 11 10 34 34 H 1.09000 * 109.47074 * 300.00010 * 14 11 10 35 35 H 0.96998 * 119.99661 * 0.02562 * 15 14 11 36 36 H 1.09008 * 110.82087 * 332.90295 * 20 18 16 37 37 H 1.08998 * 110.82017 * 96.25234 * 20 18 16 38 38 H 1.08996 * 110.31314 * 267.37681 * 21 20 18 39 39 H 1.09000 * 110.31020 * 145.19563 * 21 20 18 40 40 H 1.07995 * 120.71857 * 359.97438 * 23 22 21 41 41 H 1.08004 * 120.50299 * 179.97438 * 24 23 22 42 42 H 1.08002 * 119.59792 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0582 -3.6568 0.0027 11 6 1.0639 -4.8198 0.0031 12 1 0.3794 -4.7123 0.8446 13 8 0.3221 -4.8126 -1.2183 14 6 1.8247 -6.1411 0.1300 15 7 0.8727 -7.2547 0.1298 16 6 1.3186 -8.5223 0.2329 17 8 2.5078 -8.7413 0.3255 18 6 0.3393 -9.6678 0.2333 19 1 -0.3456 -9.5786 1.0764 20 6 1.0888 -11.0156 0.2927 21 6 0.1931 -11.9311 -0.5690 22 6 -0.5156 -11.0005 -1.5275 23 6 -1.1858 -11.2626 -2.7138 24 6 -1.7520 -10.2021 -3.4029 25 6 -1.6302 -8.9258 -2.8862 26 7 -0.9830 -8.7135 -1.7592 27 6 -0.4333 -9.6996 -1.0693 28 1 -0.4851 0.8400 -0.0004 29 1 0.3556 -2.3880 0.0023 30 1 2.6848 -3.7137 0.8928 31 1 2.6848 -3.7153 -0.8872 32 1 0.8684 -4.9045 -2.0108 33 1 2.3905 -6.1465 1.0616 34 1 2.5091 -6.2485 -0.7115 35 1 -0.0784 -7.0796 0.0554 36 1 2.0838 -10.9252 -0.1434 37 1 1.1486 -11.3808 1.3179 38 1 -0.5308 -12.4513 0.0582 39 1 0.8028 -12.6480 -1.1189 40 1 -1.2636 -12.2711 -3.0922 41 1 -2.2804 -10.3702 -4.3298 42 1 -2.0674 -8.0920 -3.4155 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497049880.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:18 Heat of formation + Delta-G solvation = -71.201046 kcal Electronic energy + Delta-G solvation = -24381.499281 eV Core-core repulsion = 20746.177848 eV Total energy + Delta-G solvation = -3635.321432 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.02140 -40.47725 -38.97536 -36.97887 -36.08246 -35.28347 -33.66089 -33.19216 -30.91876 -30.26640 -29.20159 -26.93145 -24.59703 -24.44245 -23.19821 -22.77550 -22.23110 -20.95356 -19.26929 -18.60869 -17.79883 -17.68675 -17.32681 -17.09388 -16.53792 -16.39370 -16.05227 -15.70442 -15.37417 -15.25758 -14.91581 -14.55443 -14.40176 -14.29248 -14.04875 -13.88223 -13.65622 -13.24439 -12.98757 -12.91158 -12.72479 -12.59667 -12.53687 -12.21108 -11.99788 -11.99058 -11.81833 -11.26336 -10.98959 -10.86513 -10.63289 -10.23239 -10.10320 -9.67765 -9.02866 -7.95478 -5.25608 0.10927 0.36167 1.46637 1.50240 1.53703 1.56455 2.12546 2.55696 2.82765 2.94878 3.34440 3.35596 3.46476 3.59295 3.71410 3.89897 3.95907 4.00605 4.10977 4.19076 4.20593 4.29530 4.41142 4.47071 4.58284 4.60769 4.65713 4.68843 4.83997 4.90796 4.99601 5.07787 5.19024 5.22204 5.25354 5.30747 5.40522 5.46808 5.77963 6.25168 6.51301 6.77197 7.02814 7.18643 7.32093 8.06785 8.30709 9.27632 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.025746 B = 0.002683 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.284711 B =10434.043006 C =11277.048857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.977 3.023 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.277 1.277 7 C -0.251 4.251 8 H 0.076 0.924 9 N -0.740 5.740 10 C 0.125 3.875 11 C 0.109 3.891 12 H 0.098 0.902 13 O -0.558 6.558 14 C 0.102 3.898 15 N -0.702 5.702 16 C 0.520 3.480 17 O -0.581 6.581 18 C -0.058 4.058 19 H 0.137 0.863 20 C -0.100 4.100 21 C -0.071 4.071 22 C -0.148 4.148 23 C -0.070 4.070 24 C -0.163 4.163 25 C 0.084 3.916 26 N -0.498 5.498 27 C 0.091 3.909 28 H 0.252 0.748 29 H 0.376 0.624 30 H 0.034 0.966 31 H 0.029 0.971 32 H 0.381 0.619 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.414 0.586 36 H 0.070 0.930 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.163 0.837 41 H 0.167 0.833 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.670 -29.719 -3.865 30.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.268 4.268 3 Si 0.805 3.195 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.203 1.203 7 C -0.383 4.383 8 H 0.094 0.906 9 N -0.383 5.383 10 C -0.003 4.003 11 C 0.049 3.951 12 H 0.116 0.884 13 O -0.364 6.364 14 C -0.023 4.023 15 N -0.353 5.353 16 C 0.306 3.694 17 O -0.461 6.461 18 C -0.079 4.079 19 H 0.155 0.845 20 C -0.138 4.138 21 C -0.108 4.108 22 C -0.150 4.150 23 C -0.095 4.095 24 C -0.183 4.183 25 C -0.073 4.073 26 N -0.207 5.207 27 C -0.046 4.046 28 H 0.061 0.939 29 H 0.208 0.792 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.230 0.770 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.251 0.749 36 H 0.089 0.911 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.115 0.885 40 H 0.181 0.819 41 H 0.184 0.816 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -3.109 -28.816 -3.082 29.146 hybrid contribution -0.007 0.738 -0.774 1.069 sum -3.116 -28.078 -3.856 28.512 Atomic orbital electron populations 1.69835 1.06694 1.26237 1.59087 1.25627 0.96432 1.01274 1.03454 0.85168 0.77167 0.78896 0.78243 1.20341 1.22034 1.20252 1.19616 0.91516 0.85335 1.41827 0.90591 1.42420 1.05720 1.00749 1.89396 1.21389 0.94150 0.85731 0.99022 1.22072 0.93452 0.91336 0.88200 0.88410 1.86577 1.37910 1.96156 1.15796 1.21837 0.92054 0.85555 1.02855 1.45837 1.11590 1.05068 1.72820 1.20743 0.89150 0.84445 0.75027 1.90663 1.18368 1.85132 1.51975 1.20999 0.95843 0.95041 0.96049 0.84534 1.22301 0.98477 0.90244 1.02817 1.21048 0.97992 0.96366 0.95418 1.21753 0.99665 0.96584 0.97029 1.21474 0.94216 1.01293 0.92551 1.22464 1.00607 0.93080 1.02126 1.23032 0.94948 0.97980 0.91309 1.66755 1.08837 1.36855 1.08243 1.21531 0.96917 0.90371 0.95818 0.93928 0.79154 0.94777 0.95324 0.77037 0.90385 0.91572 0.74863 0.91087 0.87365 0.87311 0.88524 0.81908 0.81581 0.81388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.69 13.06 21.65 0.28 -60.41 16 2 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 3 Si 0.98 46.85 29.55 68.60 2.03 48.87 16 4 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 5 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 7 C -0.25 -14.37 9.99 84.03 0.84 -13.53 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 9 N -0.74 -38.65 5.55 -343.45 -1.91 -40.56 16 10 C 0.12 4.98 5.90 86.38 0.51 5.49 16 11 C 0.11 3.57 3.09 30.60 0.09 3.67 16 12 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 13 O -0.56 -18.95 13.03 -148.98 -1.94 -20.89 16 14 C 0.10 2.91 5.34 86.38 0.46 3.37 16 15 N -0.70 -18.77 5.22 -463.06 -2.42 -21.18 16 16 C 0.52 14.02 7.18 87.66 0.63 14.65 16 17 O -0.58 -19.37 15.52 -3.01 -0.05 -19.41 16 18 C -0.06 -1.12 3.26 -11.58 -0.04 -1.16 16 19 H 0.14 2.08 8.14 -2.39 -0.02 2.06 16 20 C -0.10 -1.51 6.33 31.51 0.20 -1.31 16 21 C -0.07 -0.75 6.77 30.48 0.21 -0.55 16 22 C -0.15 -2.35 6.16 -19.59 -0.12 -2.47 16 23 C -0.07 -0.87 10.17 22.47 0.23 -0.64 16 24 C -0.16 -2.14 10.12 22.35 0.23 -1.92 16 25 C 0.08 1.57 11.18 84.71 0.95 2.52 16 26 N -0.50 -11.69 9.59 -182.97 -1.75 -13.44 16 27 C 0.09 1.91 6.57 42.72 0.28 2.19 16 28 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 29 H 0.38 21.25 7.67 -92.71 -0.71 20.54 16 30 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.38 11.06 9.04 -74.06 -0.67 10.39 16 33 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.41 10.87 7.74 -92.71 -0.72 10.15 16 36 H 0.07 1.42 7.07 -2.38 -0.02 1.40 16 37 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 41 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16 42 H 0.17 2.59 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -76.17 355.48 -1.86 -78.02 By element: Atomic # 1 Polarization: 43.68 SS G_CDS: -1.03 Total: 42.65 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 4.93 Total: 6.35 kcal Atomic # 7 Polarization: -129.80 SS G_CDS: -5.79 Total: -135.59 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: -1.99 Total: -40.30 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.87 kcal Total: -76.17 -1.86 -78.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497049880.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.822 kcal (2) G-P(sol) polarization free energy of solvation -76.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds