Wall clock time and date at job start Tue Mar 31 2020 03:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46496 * 120.00006 * 2 1 4 4 C 1.52999 * 109.47560 * 84.99583 * 3 2 1 5 5 H 1.08991 * 109.47204 * 59.99933 * 4 3 2 6 6 O 1.42897 * 109.46933 * 299.99955 * 4 3 2 7 7 C 1.53005 * 109.47030 * 180.02562 * 4 3 2 8 8 C 1.52996 * 117.49604 * 248.74139 * 7 4 3 9 9 C 1.52999 * 117.49686 * 180.08418 * 7 4 3 10 10 S 1.65606 * 120.00090 * 179.97438 * 2 1 3 11 11 O 1.42090 * 104.27754 * 206.07708 * 10 2 1 12 12 O 1.42104 * 104.27556 * 333.93686 * 10 2 1 13 13 C 1.81399 * 104.44612 * 90.00429 * 10 2 1 14 14 C 1.53001 * 109.46920 * 180.02562 * 13 10 2 15 15 C 1.52996 * 109.47107 * 299.99774 * 14 13 10 16 16 C 1.53005 * 109.47284 * 60.00051 * 14 13 10 17 17 C 1.50704 * 109.46866 * 179.97438 * 14 13 10 18 18 H 1.07991 * 120.00132 * 357.69122 * 17 14 13 19 19 C 1.37878 * 119.99563 * 177.69643 * 17 14 13 20 20 N 1.31510 * 120.00531 * 6.57907 * 19 17 14 21 21 Si 1.86804 * 119.99690 * 186.58052 * 19 17 14 22 22 H 1.48499 * 109.46803 * 84.99400 * 21 19 17 23 23 H 1.48500 * 109.46954 * 204.99314 * 21 19 17 24 24 H 1.48501 * 109.47228 * 324.99459 * 21 19 17 25 25 H 1.09003 * 109.47027 * 90.00562 * 1 2 3 26 26 H 1.08997 * 109.47675 * 330.01000 * 1 2 3 27 27 H 1.08993 * 109.47592 * 210.00282 * 1 2 3 28 28 H 1.09005 * 109.47244 * 204.99959 * 3 2 1 29 29 H 1.08998 * 109.47163 * 324.98727 * 3 2 1 30 30 H 0.96705 * 114.00394 * 299.99957 * 6 4 3 31 31 H 1.09004 * 115.55013 * 34.41629 * 7 4 3 32 32 H 1.09002 * 117.49892 * 0.02562 * 8 7 4 33 33 H 1.09002 * 117.49681 * 145.01848 * 8 7 4 34 34 H 1.08996 * 117.49905 * 214.97770 * 9 7 4 35 35 H 1.08998 * 117.49765 * 0.02562 * 9 7 4 36 36 H 1.09004 * 109.47079 * 299.99618 * 13 10 2 37 37 H 1.08997 * 109.47138 * 59.99897 * 13 10 2 38 38 H 1.09003 * 109.46648 * 66.67341 * 15 14 13 39 39 H 1.09003 * 109.46885 * 186.66794 * 15 14 13 40 40 H 1.08992 * 109.47121 * 306.67177 * 15 14 13 41 41 H 1.09007 * 109.46675 * 59.99912 * 16 14 13 42 42 H 1.08998 * 109.47159 * 179.97438 * 16 14 13 43 43 H 1.08992 * 109.46966 * 300.00166 * 16 14 13 44 44 H 0.96996 * 120.00118 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3435 1.7734 1.4370 5 1 2.8908 1.0379 2.0265 6 8 1.0479 1.9714 2.0062 7 6 3.1080 3.0987 1.4368 8 6 4.5153 3.1026 2.0370 9 6 3.3604 3.7689 2.7888 10 16 2.2930 -1.4342 0.0006 11 8 3.5394 -1.1189 0.6058 12 8 1.3969 -2.3559 0.6061 13 6 2.5194 -1.8268 -1.7558 14 6 3.2810 -3.1471 -1.8892 15 6 4.6483 -3.0175 -1.2153 16 6 2.4841 -4.2659 -1.2151 17 6 3.4685 -3.4736 -3.3484 18 1 3.0508 -2.8257 -4.1047 19 6 4.1732 -4.5996 -3.7178 20 7 4.5702 -5.4566 -2.8027 21 14 4.5642 -4.9079 -5.5183 22 1 5.8069 -4.1829 -5.8861 23 1 4.7559 -6.3635 -5.7409 24 1 3.4405 -4.4223 -6.3590 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 0.8900 0.5136 27 1 -0.3634 -0.8899 0.5138 28 1 3.1858 1.1177 -0.4343 29 1 1.6502 2.0042 -0.5896 30 1 0.5039 2.6149 1.5317 31 1 2.9244 3.7473 0.5801 32 1 4.8967 2.1608 2.4316 33 1 5.2576 3.7538 1.5754 34 1 3.3433 4.8582 2.8216 35 1 2.9822 3.2653 3.6785 36 1 1.5452 -1.9196 -2.2359 37 1 3.0867 -1.0296 -2.2361 38 1 4.5137 -2.8995 -0.1400 39 1 5.2366 -3.9139 -1.4115 40 1 5.1688 -2.1468 -1.6140 41 1 1.5099 -4.3582 -1.6953 42 1 3.0264 -5.2066 -1.3105 43 1 2.3480 -4.0299 -0.1598 44 1 5.0663 -6.2485 -3.0626 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590750768.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:28 Heat of formation + Delta-G solvation = -97.589639 kcal Electronic energy + Delta-G solvation = -24845.620654 eV Core-core repulsion = 21312.306127 eV Total energy + Delta-G solvation = -3533.314527 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.149 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -38.96259 -36.57238 -36.31634 -36.16691 -35.28643 -34.86686 -31.67608 -29.68023 -26.75035 -25.75557 -25.71560 -25.23479 -23.21400 -22.46780 -21.02627 -19.44166 -18.40159 -17.42385 -16.61892 -16.33842 -15.95965 -15.91990 -15.22669 -14.92953 -14.78702 -14.29942 -14.06520 -13.52982 -13.25190 -13.00918 -12.78880 -12.52907 -12.51146 -12.08969 -11.85274 -11.67961 -11.45588 -11.28676 -11.25000 -11.15929 -11.02153 -10.94496 -10.70737 -10.67138 -10.44362 -10.37544 -10.31485 -10.23398 -10.06933 -9.66631 -9.55096 -8.86722 -8.57190 -8.38508 -6.04700 -4.16337 0.84252 3.09047 3.25344 3.32384 3.33867 3.53865 4.27438 4.34117 4.39461 4.45923 4.70423 4.70952 4.80471 4.88656 4.99843 5.19902 5.21863 5.29235 5.49327 5.52668 5.61136 5.65533 5.70226 5.72863 5.83879 5.96051 5.99486 6.00830 6.18073 6.37766 6.68329 6.70111 6.78507 6.90980 7.04152 7.30574 7.48163 7.54549 7.66834 7.96958 8.09312 8.32976 8.81968 9.48794 10.96396 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.024074 B = 0.004003 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.817664 B = 6993.886895 C = 7371.932061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -1.006 6.006 3 C 0.099 3.901 4 C 0.116 3.884 5 H 0.109 0.891 6 O -0.550 6.550 7 C -0.194 4.194 8 C -0.171 4.171 9 C -0.167 4.167 10 S 2.592 3.408 11 O -0.962 6.962 12 O -0.961 6.961 13 C -0.583 4.583 14 C 0.081 3.919 15 C -0.160 4.160 16 C -0.164 4.164 17 C -0.503 4.503 18 H 0.058 0.942 19 C 0.065 3.935 20 N -0.882 5.882 21 Si 0.895 3.105 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.275 1.275 25 H 0.047 0.953 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.368 0.632 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.026 0.974 39 H 0.094 0.906 40 H 0.034 0.966 41 H 0.035 0.965 42 H 0.097 0.903 43 H 0.026 0.974 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.241 16.820 5.694 18.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.841 5.841 3 C -0.027 4.027 4 C 0.056 3.944 5 H 0.127 0.873 6 O -0.355 6.355 7 C -0.213 4.213 8 C -0.208 4.208 9 C -0.204 4.204 10 S 2.691 3.309 11 O -0.953 6.953 12 O -0.951 6.951 13 C -0.716 4.716 14 C 0.079 3.921 15 C -0.218 4.218 16 C -0.221 4.221 17 C -0.542 4.542 18 H 0.077 0.923 19 C -0.137 4.137 20 N -0.520 5.520 21 Si 0.723 3.277 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.200 1.200 25 H 0.066 0.934 26 H 0.093 0.907 27 H 0.100 0.900 28 H 0.110 0.890 29 H 0.096 0.904 30 H 0.214 0.786 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.116 0.884 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.045 0.955 39 H 0.112 0.888 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.116 0.884 43 H 0.045 0.955 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.700 15.751 6.941 17.843 hybrid contribution -0.029 0.525 -2.238 2.299 sum -4.729 16.276 4.703 17.589 Atomic orbital electron populations 1.21543 0.78845 1.04377 1.01116 1.57574 1.15102 1.21037 1.90426 1.21845 0.97567 0.86382 0.96947 1.22067 0.83552 0.94035 0.94760 0.87347 1.86657 1.26600 1.65257 1.56947 1.23003 1.00360 0.99838 0.98130 1.23006 0.90854 1.03286 1.03698 1.22850 1.02757 0.99501 0.95301 1.05759 0.73592 0.72286 0.79269 1.93528 1.43663 1.82899 1.75188 1.93525 1.65004 1.61305 1.75255 1.30582 1.09807 1.10117 1.21119 1.17939 0.90765 0.85541 0.97860 1.22198 0.99863 1.03169 0.96523 1.22307 0.99553 1.03927 0.96356 1.20934 1.34588 1.08773 0.89934 0.92333 1.24938 0.95636 0.95588 0.97544 1.69809 1.38041 1.11556 1.32595 0.86566 0.78829 0.77319 0.85017 1.20535 1.21167 1.20016 0.93402 0.90712 0.89953 0.89006 0.90423 0.78579 0.87575 0.88089 0.88597 0.88936 0.88421 0.86508 0.86602 0.95476 0.88783 0.94634 0.94533 0.88404 0.95485 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.03 10.38 59.85 0.62 1.65 16 2 N -1.01 -14.25 3.08 -121.76 -0.37 -14.62 16 3 C 0.10 1.15 4.96 -4.04 -0.02 1.13 16 4 C 0.12 1.36 3.43 -26.73 -0.09 1.27 16 5 H 0.11 1.59 7.66 -51.93 -0.40 1.19 16 6 O -0.55 -6.09 11.60 -35.23 -0.41 -6.50 16 7 C -0.19 -1.82 5.36 -90.62 -0.49 -2.31 16 8 C -0.17 -1.65 10.18 -26.70 -0.27 -1.92 16 9 C -0.17 -1.49 10.16 -26.70 -0.27 -1.76 16 10 S 2.59 48.93 4.40 -107.50 -0.47 48.45 16 11 O -0.96 -19.89 14.51 -57.54 -0.83 -20.72 16 12 O -0.96 -20.66 14.19 -57.54 -0.82 -21.48 16 13 C -0.58 -11.49 5.11 37.16 0.19 -11.30 16 14 C 0.08 1.98 0.52 -155.66 -0.08 1.90 16 15 C -0.16 -3.93 7.58 37.16 0.28 -3.65 16 16 C -0.16 -4.09 7.79 37.16 0.29 -3.80 16 17 C -0.50 -13.24 8.01 -34.44 -0.28 -13.52 16 18 H 0.06 1.50 7.75 -52.49 -0.41 1.09 16 19 C 0.06 1.72 5.09 -17.82 -0.09 1.63 16 20 N -0.88 -24.11 9.39 55.43 0.52 -23.59 16 21 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.70 6.38 -51.93 -0.33 0.37 16 27 H 0.08 1.11 6.91 -51.93 -0.36 0.75 16 28 H 0.09 1.09 7.61 -51.93 -0.40 0.69 16 29 H 0.08 0.65 8.11 -51.93 -0.42 0.23 16 30 H 0.37 2.56 8.69 45.56 0.40 2.96 16 31 H 0.11 0.81 8.11 -51.93 -0.42 0.39 16 32 H 0.10 1.09 8.05 -51.93 -0.42 0.67 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.12 2.11 8.14 -51.92 -0.42 1.69 16 37 H 0.12 2.06 8.14 -51.93 -0.42 1.63 16 38 H 0.03 0.63 5.96 -51.93 -0.31 0.32 16 39 H 0.09 2.49 5.99 -51.93 -0.31 2.18 16 40 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.10 2.63 6.01 -51.93 -0.31 2.31 16 43 H 0.03 0.64 5.46 -51.93 -0.28 0.36 16 44 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 352.75 15.07 5.32 5.32 Total: -1.00 -32.02 352.75 -8.79 -40.81 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -6.49 Total: 7.44 kcal Atomic # 6 Polarization: -30.46 SS G_CDS: -0.21 Total: -30.66 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.15 Total: -38.21 kcal Atomic # 8 Polarization: -46.64 SS G_CDS: -2.06 Total: -48.70 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 48.93 SS G_CDS: -0.47 Total: 48.45 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.02 -8.79 -40.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590750768.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.781 kcal (2) G-P(sol) polarization free energy of solvation -32.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds