Wall clock time and date at job start Tue Mar 31 2020 03:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46496 * 120.00006 * 2 1 4 4 C 1.52999 * 109.47560 * 84.99583 * 3 2 1 5 5 H 1.08991 * 109.47204 * 59.99933 * 4 3 2 6 6 O 1.42897 * 109.46933 * 299.99955 * 4 3 2 7 7 C 1.53005 * 109.47030 * 180.02562 * 4 3 2 8 8 C 1.52996 * 117.49604 * 248.74139 * 7 4 3 9 9 C 1.52999 * 117.49686 * 180.08418 * 7 4 3 10 10 S 1.65606 * 120.00090 * 179.97438 * 2 1 3 11 11 O 1.42090 * 104.27754 * 206.07708 * 10 2 1 12 12 O 1.42104 * 104.27556 * 333.93686 * 10 2 1 13 13 C 1.81399 * 104.44612 * 90.00429 * 10 2 1 14 14 C 1.53001 * 109.46920 * 180.02562 * 13 10 2 15 15 C 1.52996 * 109.47107 * 299.99774 * 14 13 10 16 16 C 1.53005 * 109.47284 * 60.00051 * 14 13 10 17 17 C 1.50704 * 109.46866 * 179.97438 * 14 13 10 18 18 H 1.07991 * 120.00132 * 357.69122 * 17 14 13 19 19 C 1.37878 * 119.99563 * 177.69643 * 17 14 13 20 20 N 1.31510 * 120.00531 * 6.57907 * 19 17 14 21 21 Si 1.86804 * 119.99690 * 186.58052 * 19 17 14 22 22 H 1.48499 * 109.46803 * 84.99400 * 21 19 17 23 23 H 1.48500 * 109.46954 * 204.99314 * 21 19 17 24 24 H 1.48501 * 109.47228 * 324.99459 * 21 19 17 25 25 H 1.09003 * 109.47027 * 90.00562 * 1 2 3 26 26 H 1.08997 * 109.47675 * 330.01000 * 1 2 3 27 27 H 1.08993 * 109.47592 * 210.00282 * 1 2 3 28 28 H 1.09005 * 109.47244 * 204.99959 * 3 2 1 29 29 H 1.08998 * 109.47163 * 324.98727 * 3 2 1 30 30 H 0.96705 * 114.00394 * 299.99957 * 6 4 3 31 31 H 1.09004 * 115.55013 * 34.41629 * 7 4 3 32 32 H 1.09002 * 117.49892 * 0.02562 * 8 7 4 33 33 H 1.09002 * 117.49681 * 145.01848 * 8 7 4 34 34 H 1.08996 * 117.49905 * 214.97770 * 9 7 4 35 35 H 1.08998 * 117.49765 * 0.02562 * 9 7 4 36 36 H 1.09004 * 109.47079 * 299.99618 * 13 10 2 37 37 H 1.08997 * 109.47138 * 59.99897 * 13 10 2 38 38 H 1.09003 * 109.46648 * 66.67341 * 15 14 13 39 39 H 1.09003 * 109.46885 * 186.66794 * 15 14 13 40 40 H 1.08992 * 109.47121 * 306.67177 * 15 14 13 41 41 H 1.09007 * 109.46675 * 59.99912 * 16 14 13 42 42 H 1.08998 * 109.47159 * 179.97438 * 16 14 13 43 43 H 1.08992 * 109.46966 * 300.00166 * 16 14 13 44 44 H 0.96996 * 120.00118 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3435 1.7734 1.4370 5 1 2.8908 1.0379 2.0265 6 8 1.0479 1.9714 2.0062 7 6 3.1080 3.0987 1.4368 8 6 4.5153 3.1026 2.0370 9 6 3.3604 3.7689 2.7888 10 16 2.2930 -1.4342 0.0006 11 8 3.5394 -1.1189 0.6058 12 8 1.3969 -2.3559 0.6061 13 6 2.5194 -1.8268 -1.7558 14 6 3.2810 -3.1471 -1.8892 15 6 4.6483 -3.0175 -1.2153 16 6 2.4841 -4.2659 -1.2151 17 6 3.4685 -3.4736 -3.3484 18 1 3.0508 -2.8257 -4.1047 19 6 4.1732 -4.5996 -3.7178 20 7 4.5702 -5.4566 -2.8027 21 14 4.5642 -4.9079 -5.5183 22 1 5.8069 -4.1829 -5.8861 23 1 4.7559 -6.3635 -5.7409 24 1 3.4405 -4.4223 -6.3590 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 0.8900 0.5136 27 1 -0.3634 -0.8899 0.5138 28 1 3.1858 1.1177 -0.4343 29 1 1.6502 2.0042 -0.5896 30 1 0.5039 2.6149 1.5317 31 1 2.9244 3.7473 0.5801 32 1 4.8967 2.1608 2.4316 33 1 5.2576 3.7538 1.5754 34 1 3.3433 4.8582 2.8216 35 1 2.9822 3.2653 3.6785 36 1 1.5452 -1.9196 -2.2359 37 1 3.0867 -1.0296 -2.2361 38 1 4.5137 -2.8995 -0.1400 39 1 5.2366 -3.9139 -1.4115 40 1 5.1688 -2.1468 -1.6140 41 1 1.5099 -4.3582 -1.6953 42 1 3.0264 -5.2066 -1.3105 43 1 2.3480 -4.0299 -0.1598 44 1 5.0663 -6.2485 -3.0626 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590750768.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:27 Heat of formation + Delta-G solvation = -120.308943 kcal Electronic energy + Delta-G solvation = -24846.605837 eV Core-core repulsion = 21312.306127 eV Total energy + Delta-G solvation = -3534.299710 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.149 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.80046 -38.14449 -38.14087 -37.13749 -36.79825 -35.81750 -33.64601 -30.58327 -28.40853 -27.71779 -27.26174 -26.74726 -24.17815 -23.18116 -21.81902 -21.28930 -19.76227 -18.82439 -17.91108 -17.55802 -17.28036 -17.15228 -16.67581 -16.46065 -16.10070 -15.36078 -15.05339 -14.99943 -14.65363 -14.44318 -14.34507 -13.94468 -13.76772 -13.56403 -13.20806 -13.10996 -12.86964 -12.80159 -12.63369 -12.48270 -12.42091 -12.37684 -12.19694 -12.15429 -12.08742 -11.94763 -11.58980 -11.42762 -11.36438 -11.19623 -11.03665 -10.66600 -10.40281 -9.71266 -8.04186 -6.22758 -0.63094 1.44474 1.45825 1.54116 1.81728 2.43966 2.80266 2.92102 3.17290 3.24119 3.52986 3.64550 3.79559 3.99143 4.05781 4.11653 4.13913 4.23585 4.41638 4.48766 4.57335 4.68856 4.76215 4.82249 4.83674 4.83751 4.91678 4.97788 5.02614 5.06059 5.08558 5.10954 5.27762 5.34515 5.36485 5.46751 5.63340 5.69692 5.94910 6.09810 6.33213 6.81807 6.93920 7.45430 8.95603 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.024074 B = 0.004003 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.817664 B = 6993.886895 C = 7371.932061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.998 5.998 3 C 0.091 3.909 4 C 0.118 3.882 5 H 0.068 0.932 6 O -0.563 6.563 7 C -0.187 4.187 8 C -0.186 4.186 9 C -0.161 4.161 10 S 2.605 3.395 11 O -0.987 6.987 12 O -0.993 6.993 13 C -0.585 4.585 14 C 0.068 3.932 15 C -0.155 4.155 16 C -0.159 4.159 17 C -0.519 4.519 18 H 0.064 0.936 19 C 0.018 3.982 20 N -0.907 5.907 21 Si 0.955 3.045 22 H -0.275 1.275 23 H -0.288 1.288 24 H -0.267 1.267 25 H 0.073 0.927 26 H 0.104 0.896 27 H 0.061 0.939 28 H 0.088 0.912 29 H 0.123 0.877 30 H 0.388 0.612 31 H 0.135 0.865 32 H 0.078 0.922 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.083 0.917 36 H 0.133 0.867 37 H 0.136 0.864 38 H 0.027 0.973 39 H 0.069 0.931 40 H 0.043 0.957 41 H 0.038 0.962 42 H 0.073 0.927 43 H 0.028 0.972 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.329 19.640 4.282 21.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.836 5.836 3 C -0.035 4.035 4 C 0.057 3.943 5 H 0.086 0.914 6 O -0.371 6.371 7 C -0.206 4.206 8 C -0.223 4.223 9 C -0.198 4.198 10 S 2.703 3.297 11 O -0.977 6.977 12 O -0.983 6.983 13 C -0.718 4.718 14 C 0.066 3.934 15 C -0.213 4.213 16 C -0.217 4.217 17 C -0.558 4.558 18 H 0.082 0.918 19 C -0.182 4.182 20 N -0.546 5.546 21 Si 0.781 3.219 22 H -0.201 1.201 23 H -0.214 1.214 24 H -0.192 1.192 25 H 0.091 0.909 26 H 0.122 0.878 27 H 0.079 0.921 28 H 0.106 0.894 29 H 0.141 0.859 30 H 0.238 0.762 31 H 0.153 0.847 32 H 0.097 0.903 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.102 0.898 36 H 0.151 0.849 37 H 0.155 0.845 38 H 0.046 0.954 39 H 0.088 0.912 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.092 0.908 43 H 0.047 0.953 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.796 18.576 5.520 20.228 hybrid contribution 0.256 -0.301 -1.724 1.769 sum -5.540 18.276 3.796 19.471 Atomic orbital electron populations 1.21814 0.77098 1.04831 1.02962 1.57196 1.16033 1.20276 1.90068 1.22186 0.97948 0.85828 0.97521 1.21847 0.83930 0.94418 0.94059 0.91431 1.86621 1.26581 1.66258 1.57613 1.23008 0.99335 0.98969 0.99315 1.23051 0.91686 1.02909 1.04650 1.22884 1.01760 1.00532 0.94621 1.05042 0.73059 0.72998 0.78586 1.93492 1.45240 1.83476 1.75492 1.93477 1.65635 1.63432 1.75764 1.30506 1.10340 1.08232 1.22694 1.17938 0.90919 0.87650 0.96911 1.22121 1.00179 1.02259 0.96731 1.22235 0.99405 1.03357 0.96729 1.21281 1.34540 1.08875 0.91055 0.91811 1.25694 0.95669 0.95564 1.01252 1.69954 1.38514 1.11844 1.34292 0.85621 0.78781 0.76923 0.80611 1.20109 1.21368 1.19158 0.90877 0.87765 0.92050 0.89404 0.85874 0.76241 0.84707 0.90318 0.86996 0.86761 0.89850 0.84858 0.84541 0.95427 0.91222 0.93760 0.94292 0.90830 0.95291 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.62 10.38 127.77 1.33 2.95 16 2 N -1.00 -26.12 3.08 -539.15 -1.66 -27.78 16 3 C 0.09 1.83 4.96 86.38 0.43 2.26 16 4 C 0.12 2.57 3.43 30.60 0.11 2.67 16 5 H 0.07 2.02 7.66 -2.39 -0.02 2.01 16 6 O -0.56 -11.12 11.60 -148.98 -1.73 -12.85 16 7 C -0.19 -3.04 5.36 -10.79 -0.06 -3.09 16 8 C -0.19 -3.38 10.18 30.62 0.31 -3.07 16 9 C -0.16 -2.57 10.16 30.62 0.31 -2.26 16 10 S 2.61 97.10 4.40 -56.49 -0.25 96.85 16 11 O -0.99 -41.18 14.51 -127.65 -1.85 -43.03 16 12 O -0.99 -43.04 14.19 -127.65 -1.81 -44.85 16 13 C -0.59 -22.31 5.11 71.98 0.37 -21.94 16 14 C 0.07 3.31 0.52 -52.93 -0.03 3.28 16 15 C -0.16 -7.75 7.58 71.98 0.55 -7.20 16 16 C -0.16 -8.11 7.79 71.98 0.56 -7.55 16 17 C -0.52 -27.03 8.01 25.60 0.20 -26.83 16 18 H 0.06 3.18 7.75 -2.92 -0.02 3.15 16 19 C 0.02 0.94 5.09 84.66 0.43 1.37 16 20 N -0.91 -50.53 9.39 21.45 0.20 -50.33 16 21 Si 0.95 41.93 29.54 68.60 2.03 43.96 16 22 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 24 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 25 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.10 1.57 6.38 -2.39 -0.02 1.55 16 27 H 0.06 1.57 6.91 -2.39 -0.02 1.56 16 28 H 0.09 1.88 7.61 -2.38 -0.02 1.86 16 29 H 0.12 1.41 8.11 -2.39 -0.02 1.39 16 30 H 0.39 3.90 8.69 -74.05 -0.64 3.26 16 31 H 0.14 1.44 8.11 -2.39 -0.02 1.42 16 32 H 0.08 1.76 8.05 -2.39 -0.02 1.74 16 33 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.13 4.57 8.14 -2.39 -0.02 4.55 16 37 H 0.14 4.55 8.14 -2.39 -0.02 4.53 16 38 H 0.03 1.32 5.96 -2.39 -0.01 1.31 16 39 H 0.07 3.80 5.99 -2.39 -0.01 3.79 16 40 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.04 1.87 8.14 -2.38 -0.02 1.86 16 42 H 0.07 4.08 6.01 -2.39 -0.01 4.06 16 43 H 0.03 1.42 5.46 -2.39 -0.01 1.40 16 44 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -70.53 352.75 -0.22 -70.75 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 0.35 Total: 26.68 kcal Atomic # 6 Polarization: -63.91 SS G_CDS: 4.51 Total: -59.40 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -1.46 Total: -78.11 kcal Atomic # 8 Polarization: -95.33 SS G_CDS: -5.39 Total: -100.73 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Atomic # 16 Polarization: 97.10 SS G_CDS: -0.25 Total: 96.85 kcal Total: -70.53 -0.22 -70.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590750768.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.558 kcal (2) G-P(sol) polarization free energy of solvation -70.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds