Wall clock time and date at job start Tue Mar 31 2020 03:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00345 * 2 1 4 4 H 1.48504 * 109.46659 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47048 * 239.99998 * 3 2 1 6 6 H 1.48502 * 109.47474 * 119.99772 * 3 2 1 7 7 C 1.38820 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99796 * 5.64404 * 7 2 1 9 9 N 1.36932 * 120.00255 * 185.64579 * 7 2 1 10 10 C 1.47210 * 125.88838 * 18.07409 * 9 7 2 11 11 C 1.54761 * 107.22050 * 176.16202 * 10 9 7 12 12 C 1.54195 * 102.14919 * 338.82520 * 11 10 9 13 13 H 1.09000 * 108.73327 * 281.62876 * 12 11 10 14 14 C 1.50932 * 112.77674 * 159.93929 * 12 11 10 15 15 N 1.46714 * 111.14345 * 289.89859 * 14 12 11 16 16 C 1.34776 * 121.35619 * 127.83118 * 15 14 12 17 17 O 1.21285 * 119.99993 * 359.97438 * 16 15 14 18 18 C 1.50698 * 120.00031 * 179.97438 * 16 15 14 19 19 C 1.50697 * 109.47069 * 179.97438 * 18 16 15 20 20 N 1.33240 * 125.52576 * 90.00388 * 19 18 16 21 21 C 1.30835 * 109.83153 * 179.97438 * 20 19 18 22 22 N 1.34428 * 108.07821 * 0.02562 * 21 20 19 23 23 H 0.96998 * 126.82534 * 179.97438 * 22 21 20 24 24 N 1.30712 * 125.52983 * 269.69597 * 19 18 16 25 25 C 1.47208 * 117.28612 * 307.81675 * 15 14 12 26 26 C 1.52757 * 107.75789 * 58.08255 * 25 15 14 27 27 C 1.48625 * 125.88898 * 198.38220 * 9 7 2 28 28 H 1.08999 * 112.00921 * 328.62355 * 27 9 7 29 29 H 0.96999 * 119.99905 * 185.14584 * 1 2 3 30 30 H 1.08999 * 109.88914 * 295.70207 * 10 9 7 31 31 H 1.08997 * 109.89094 * 56.88158 * 10 9 7 32 32 H 1.09010 * 111.04873 * 220.52819 * 11 10 9 33 33 H 1.09000 * 110.69645 * 96.97179 * 11 10 9 34 34 H 1.09001 * 109.14559 * 169.47729 * 14 12 11 35 35 H 1.08996 * 109.10408 * 50.29982 * 14 12 11 36 36 H 1.08994 * 109.47329 * 300.00516 * 18 16 15 37 37 H 1.09001 * 109.46708 * 60.00719 * 18 16 15 38 38 H 1.08002 * 125.96121 * 179.97438 * 21 20 19 39 39 H 1.09000 * 109.80602 * 298.51577 * 25 15 14 40 40 H 1.09003 * 109.85628 * 177.67606 * 25 15 14 41 41 H 1.09001 * 109.20695 * 181.75742 * 26 25 15 42 42 H 1.08996 * 109.16553 * 62.43933 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1040 1.6963 -1.2125 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 1.4742 -2.1353 -0.0910 9 7 3.3746 -1.2050 0.1172 10 6 4.2006 -0.0924 0.6142 11 6 5.6648 -0.5918 0.6558 12 6 5.4847 -2.1228 0.6902 13 1 5.2171 -2.4211 1.7039 14 6 6.7240 -2.8668 0.2558 15 7 6.9639 -2.7012 -1.1821 16 6 8.1579 -2.2876 -1.6508 17 8 9.0609 -2.0434 -0.8788 18 6 8.3710 -2.1284 -3.1341 19 6 9.7793 -1.6579 -3.3916 20 7 10.8355 -2.4463 -3.5867 21 6 11.9039 -1.7168 -3.7820 22 7 11.5440 -0.4233 -3.7136 23 1 12.1233 0.3476 -3.8185 24 7 10.1617 -0.4101 -3.4655 25 6 5.8474 -3.0056 -2.0920 26 6 4.6732 -2.1085 -1.7051 27 6 4.2774 -2.3296 -0.2422 28 1 3.8015 -3.2990 -0.0938 29 1 -0.4850 -0.8367 0.0753 30 1 4.1166 0.7611 -0.0585 31 1 3.8783 0.1897 1.6165 32 1 6.1732 -0.2396 1.5534 33 1 6.2026 -0.2833 -0.2407 34 1 6.6007 -3.9269 0.4778 35 1 7.5821 -2.4835 0.8078 36 1 8.2113 -3.0863 -3.6290 37 1 7.6660 -1.3951 -3.5258 38 1 12.9011 -2.0888 -3.9653 39 1 5.5619 -4.0525 -1.9890 40 1 6.1431 -2.8033 -3.1215 41 1 3.8212 -2.3368 -2.3454 42 1 4.9579 -1.0658 -1.8458 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036865708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:31 Heat of formation + Delta-G solvation = 96.513183 kcal Electronic energy + Delta-G solvation = -25681.116181 eV Core-core repulsion = 22085.360135 eV Total energy + Delta-G solvation = -3595.756046 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.31915 -40.32853 -38.43535 -35.45275 -33.60494 -32.74878 -31.91637 -31.48136 -30.45347 -29.14469 -28.25907 -25.18574 -23.43892 -22.99408 -22.69570 -21.32405 -20.54561 -19.61841 -18.57761 -18.25712 -17.38793 -17.28797 -16.00172 -15.80423 -15.35060 -15.20793 -15.11441 -14.66750 -14.01632 -13.71743 -13.53555 -13.31096 -13.03646 -12.84943 -12.57164 -12.37174 -12.24266 -12.02925 -11.73510 -11.49933 -11.39975 -10.86942 -10.72456 -10.41078 -10.39499 -10.27056 -10.05319 -9.90001 -9.86883 -9.59498 -9.14106 -9.03660 -8.72752 -8.53416 -6.99430 -6.29191 -3.25675 1.39051 2.40312 2.56565 2.65940 3.15004 3.44932 3.49617 3.72109 3.84538 4.39306 4.51901 4.62258 4.67484 4.82452 4.98528 5.05307 5.18642 5.28112 5.30187 5.31483 5.43482 5.52363 5.63148 5.75279 5.79703 5.91628 5.95751 6.01873 6.04450 6.13355 6.15029 6.28349 6.38277 6.48843 6.58680 6.75788 6.77922 6.82831 6.94214 7.45974 7.71104 7.84550 8.19058 8.34238 9.04757 9.54799 10.26063 11.21319 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.023771 B = 0.003710 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.633327 B = 7545.069856 C = 7933.515764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.021 4.021 3 Si 1.075 2.925 4 H -0.304 1.304 5 H -0.299 1.299 6 H -0.286 1.286 7 C -0.316 4.316 8 H 0.075 0.925 9 N -0.611 5.611 10 C 0.108 3.892 11 C -0.120 4.120 12 C -0.114 4.114 13 H 0.084 0.916 14 C 0.129 3.871 15 N -0.604 5.604 16 C 0.528 3.472 17 O -0.539 6.539 18 C -0.050 4.050 19 C 0.251 3.749 20 N -0.535 5.535 21 C 0.261 3.739 22 N -0.484 5.484 23 H 0.441 0.559 24 N -0.302 5.302 25 C 0.104 3.896 26 C -0.146 4.146 27 C 0.168 3.832 28 H 0.067 0.933 29 H 0.261 0.739 30 H 0.026 0.974 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.222 0.778 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.392 -5.618 -7.790 24.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.220 4.220 3 Si 0.910 3.090 4 H -0.232 1.232 5 H -0.228 1.228 6 H -0.213 1.213 7 C -0.444 4.444 8 H 0.093 0.907 9 N -0.337 5.337 10 C -0.016 4.016 11 C -0.158 4.158 12 C -0.134 4.134 13 H 0.102 0.898 14 C 0.006 3.994 15 N -0.337 5.337 16 C 0.314 3.686 17 O -0.416 6.416 18 C -0.092 4.092 19 C -0.032 4.032 20 N -0.263 5.263 21 C -0.039 4.039 22 N -0.202 5.202 23 H 0.287 0.713 24 N -0.131 5.131 25 C -0.019 4.019 26 C -0.187 4.187 27 C 0.061 3.939 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.044 0.956 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.239 0.761 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 22.011 -3.624 -7.332 23.481 hybrid contribution 0.773 -1.154 -0.134 1.396 sum 22.784 -4.778 -7.466 24.448 Atomic orbital electron populations 1.70891 1.05655 1.29359 1.51596 1.25927 0.96539 1.01038 0.98482 0.83772 0.72876 0.75976 0.76361 1.23236 1.22763 1.21299 1.20154 0.79337 0.95153 1.49741 0.90697 1.45265 1.02338 1.11476 1.74586 1.22120 0.90043 0.91987 0.97477 1.22480 0.96970 0.95051 1.01313 1.21917 0.94879 0.95941 1.00679 0.89768 1.20919 0.98361 0.99715 0.80374 1.48040 1.11529 1.66305 1.07869 1.20019 0.82014 0.76735 0.89811 1.90702 1.41833 1.50373 1.58655 1.19939 0.89273 1.04655 0.95330 1.23323 0.95832 0.86669 0.97386 1.70347 0.97838 1.34969 1.23162 1.26050 1.00234 0.81251 0.96334 1.48085 1.07551 1.09066 1.55543 0.71340 1.78028 0.89562 1.21008 1.24478 1.21917 0.86902 1.00119 0.92954 1.22516 0.96473 0.99759 0.99920 1.21225 0.89005 0.92899 0.90796 0.91519 0.92915 0.95637 0.93607 0.91551 0.91815 0.91605 0.89363 0.86008 0.86342 0.76149 0.90844 0.90184 0.90705 0.91619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.33 13.70 55.49 0.76 -28.57 16 2 C -0.02 -0.61 5.50 -17.43 -0.10 -0.70 16 3 Si 1.08 27.31 24.56 -169.99 -4.18 23.14 16 4 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 5 H -0.30 -7.35 6.80 56.52 0.38 -6.97 16 6 H -0.29 -6.71 5.32 56.52 0.30 -6.40 16 7 C -0.32 -8.83 10.62 -15.06 -0.16 -8.99 16 8 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 9 N -0.61 -14.38 2.78 -161.76 -0.45 -14.83 16 10 C 0.11 2.37 4.30 -2.73 -0.01 2.36 16 11 C -0.12 -2.12 5.89 -25.18 -0.15 -2.27 16 12 C -0.11 -1.83 2.89 -90.55 -0.26 -2.09 16 13 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 14 C 0.13 1.78 5.84 -4.96 -0.03 1.75 16 15 N -0.60 -8.09 2.80 -174.33 -0.49 -8.58 16 16 C 0.53 7.64 7.71 -10.99 -0.08 7.56 16 17 O -0.54 -9.76 15.50 5.55 0.09 -9.67 16 18 C -0.05 -0.58 4.70 -29.04 -0.14 -0.71 16 19 C 0.25 3.35 6.63 -156.86 -1.04 2.31 16 20 N -0.54 -6.62 11.19 -11.98 -0.13 -6.75 16 21 C 0.26 2.13 13.13 -90.65 -1.19 0.94 16 22 N -0.48 -4.21 7.45 29.53 0.22 -3.99 16 23 H 0.44 2.05 8.96 -182.33 -1.63 0.42 16 24 N -0.30 -4.02 12.80 32.42 0.41 -3.60 16 25 C 0.10 1.22 6.36 -3.78 -0.02 1.20 16 26 C -0.15 -2.35 5.22 -26.78 -0.14 -2.49 16 27 C 0.17 3.08 3.62 -66.19 -0.24 2.84 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.26 8.07 8.73 -40.82 -0.36 7.72 16 30 H 0.03 0.61 3.85 -51.93 -0.20 0.41 16 31 H 0.05 1.06 6.70 -51.93 -0.35 0.71 16 32 H 0.07 1.07 8.14 -51.92 -0.42 0.64 16 33 H 0.06 1.13 7.41 -51.93 -0.38 0.75 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.09 1.31 7.04 -51.93 -0.37 0.94 16 36 H 0.12 1.10 7.90 -51.93 -0.41 0.68 16 37 H 0.12 1.21 7.81 -51.93 -0.41 0.80 16 38 H 0.22 0.57 8.06 -52.49 -0.42 0.15 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 0.74 6.05 -51.93 -0.31 0.42 16 41 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 42 H 0.07 1.18 6.91 -51.93 -0.36 0.82 16 LS Contribution 328.76 15.07 4.95 4.95 Total: -1.00 -38.13 328.76 -9.45 -47.58 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -7.07 Total: -1.39 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: -3.56 Total: 1.72 kcal Atomic # 7 Polarization: -66.64 SS G_CDS: 0.32 Total: -66.32 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.67 kcal Atomic # 14 Polarization: 27.31 SS G_CDS: -4.18 Total: 23.14 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -38.13 -9.45 -47.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036865708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.090 kcal (2) G-P(sol) polarization free energy of solvation -38.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds