Wall clock time and date at job start Tue Mar 31 2020 04:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47114 * 2 1 4 4 C 1.50704 * 109.47037 * 240.00291 * 2 1 3 5 5 H 1.08001 * 119.99610 * 240.00113 * 4 2 1 6 6 C 1.37874 * 119.99933 * 59.99685 * 4 2 1 7 7 N 1.31514 * 119.99587 * 179.72888 * 6 4 2 8 8 Si 1.86798 * 120.00412 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.47085 * 269.72498 * 8 6 4 10 10 H 1.48498 * 109.46783 * 29.72450 * 8 6 4 11 11 H 1.48500 * 109.47246 * 149.72406 * 8 6 4 12 12 N 1.46499 * 109.47244 * 120.00137 * 2 1 3 13 13 C 1.34774 * 119.99869 * 274.99744 * 12 2 1 14 14 O 1.21362 * 120.00147 * 0.02562 * 13 12 2 15 15 C 1.49368 * 120.00268 * 180.02562 * 13 12 2 16 16 O 1.21362 * 119.99585 * 0.02562 * 15 13 12 17 17 N 1.34774 * 120.00268 * 180.02562 * 15 13 12 18 18 C 1.39235 * 120.00070 * 174.91336 * 17 15 13 19 19 C 1.39439 * 119.63310 * 185.07441 * 18 17 15 20 20 C 1.38315 * 119.29235 * 179.97438 * 19 18 17 21 21 C 1.38792 * 118.56726 * 0.02562 * 20 19 18 22 22 C 1.39164 * 119.21889 * 359.97438 * 21 20 19 23 23 C 1.48161 * 119.68000 * 180.02562 * 22 21 20 24 24 N 1.34774 * 119.99675 * 179.97438 * 23 22 21 25 25 O 1.21508 * 120.00228 * 0.02562 * 23 22 21 26 26 N 1.32036 * 119.63069 * 4.80077 * 18 17 15 27 27 H 1.09002 * 109.46410 * 299.99746 * 1 2 3 28 28 H 1.09001 * 109.46871 * 59.99961 * 1 2 3 29 29 H 1.08993 * 109.46812 * 179.97438 * 1 2 3 30 30 H 0.97005 * 120.00440 * 180.27844 * 7 6 4 31 31 H 0.96999 * 120.00196 * 95.00462 * 12 2 1 32 32 H 0.97003 * 120.00387 * 354.91630 * 17 15 13 33 33 H 1.07995 * 120.35448 * 359.97438 * 19 18 17 34 34 H 1.07992 * 120.71309 * 180.02562 * 20 19 18 35 35 H 1.07998 * 120.38842 * 179.97438 * 21 20 19 36 36 H 0.97001 * 120.00706 * 0.02562 * 24 23 22 37 37 H 0.97002 * 120.00011 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 2.1420 -0.8561 -3.5565 8 14 0.6258 1.2799 -2.6542 9 1 -0.8017 0.8740 -2.7060 10 1 0.8442 2.1742 -1.4890 11 1 0.9817 1.9990 -3.9037 12 7 2.0184 -0.6906 1.1961 13 6 2.1472 -0.0183 2.3571 14 8 1.8581 1.1592 2.4117 15 6 2.6456 -0.7222 3.5765 16 8 2.9351 -1.8995 3.5218 17 7 2.7739 -0.0500 4.7376 18 6 3.1366 -0.7281 5.8983 19 6 3.1639 -0.0471 7.1147 20 6 3.5247 -0.7278 8.2635 21 6 3.8494 -2.0735 8.1632 22 6 3.8017 -2.6928 6.9179 23 6 4.1457 -4.1291 6.7993 24 7 4.1012 -4.7354 5.5965 25 8 4.4670 -4.7604 7.7864 26 7 3.4456 -2.0103 5.8357 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.9110 -0.5224 -4.4376 31 1 2.2492 -1.6318 1.1526 32 1 2.6135 0.9063 4.7647 33 1 2.9061 1.0007 7.1595 34 1 3.5531 -0.2230 9.2177 35 1 4.1356 -2.6333 9.0413 36 1 3.8443 -4.2316 4.8084 37 1 4.3267 -5.6756 5.5187 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324357607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:45:01 Heat of formation + Delta-G solvation = -48.670917 kcal Electronic energy + Delta-G solvation = -24190.704421 eV Core-core repulsion = 20355.100963 eV Total energy + Delta-G solvation = -3835.603458 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.116 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.34705 -40.18775 -39.05084 -38.09897 -35.69316 -34.89109 -34.01922 -32.59053 -32.49316 -30.62173 -30.12207 -25.82168 -25.33572 -25.07365 -23.08644 -21.41243 -21.01924 -19.88505 -19.03718 -18.23637 -17.40400 -17.03029 -16.63380 -16.37880 -16.03250 -15.72571 -15.60146 -15.27749 -15.11732 -14.44347 -14.30275 -14.18300 -13.58403 -13.39053 -13.34392 -12.98479 -12.54710 -12.32456 -11.99323 -11.61234 -11.43679 -11.13208 -10.92196 -10.71197 -10.30294 -10.27651 -9.97437 -9.82501 -9.72457 -9.37861 -9.15127 -8.88787 -8.68785 -8.45452 -6.29109 -4.33564 0.29407 0.81451 1.67964 2.23961 2.52574 3.16047 3.16228 3.28826 3.30524 3.39981 3.61007 3.68751 4.10961 4.22658 4.42645 4.62269 4.68441 4.79363 4.93446 5.04500 5.08702 5.49208 5.74798 5.79836 6.15565 6.19831 6.26551 6.38416 6.51511 6.64515 6.68231 6.88729 7.04074 7.18211 7.32176 7.39858 7.75347 7.95676 8.05950 8.31083 8.41811 8.70594 9.29002 10.82797 Molecular weight = 306.12amu Principal moments of inertia in cm(-1) A = 0.025072 B = 0.003098 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.512725 B = 9036.548294 C = 9954.668880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.235 3.765 3 H 0.054 0.946 4 C -0.540 4.540 5 H 0.084 0.916 6 C 0.081 3.919 7 N -0.888 5.888 8 Si 0.885 3.115 9 H -0.275 1.275 10 H -0.261 1.261 11 H -0.293 1.293 12 N -0.659 5.659 13 C 0.498 3.502 14 O -0.537 6.537 15 C 0.504 3.496 16 O -0.456 6.456 17 N -0.639 5.639 18 C 0.364 3.636 19 C -0.177 4.177 20 C -0.053 4.053 21 C -0.142 4.142 22 C 0.105 3.895 23 C 0.580 3.420 24 N -0.830 5.830 25 O -0.543 6.543 26 N -0.455 5.455 27 H 0.037 0.963 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.269 0.731 31 H 0.409 0.591 32 H 0.431 0.569 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.420 0.580 37 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.392 0.645 21.391 21.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.132 3.868 3 H 0.072 0.928 4 C -0.578 4.578 5 H 0.102 0.898 6 C -0.124 4.124 7 N -0.524 5.524 8 Si 0.714 3.286 9 H -0.202 1.202 10 H -0.186 1.186 11 H -0.220 1.220 12 N -0.308 5.308 13 C 0.276 3.724 14 O -0.416 6.416 15 C 0.285 3.715 16 O -0.323 6.323 17 N -0.289 5.289 18 C 0.130 3.870 19 C -0.201 4.201 20 C -0.079 4.079 21 C -0.165 4.165 22 C -0.034 4.034 23 C 0.363 3.637 24 N -0.393 5.393 25 O -0.420 6.420 26 N -0.173 5.173 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.245 0.755 32 H 0.270 0.730 33 H 0.164 0.836 34 H 0.166 0.834 35 H 0.167 0.833 36 H 0.252 0.748 37 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 1.513 -0.096 20.906 20.961 hybrid contribution -0.619 1.152 0.000 1.308 sum 0.894 1.056 20.907 20.952 Atomic orbital electron populations 1.22472 0.98672 1.01339 0.99646 1.19324 0.90560 0.94792 0.82074 0.92780 1.20989 1.33759 1.14818 0.88267 0.89843 1.24818 0.95431 0.96710 0.95423 1.69859 1.44426 1.40000 0.98115 0.86884 0.80573 0.83470 0.77628 1.20168 1.18619 1.21982 1.46129 1.61305 1.14812 1.08571 1.19715 0.80929 0.87213 0.84536 1.90732 1.50889 1.15222 1.84737 1.20869 0.78832 0.87401 0.84424 1.90772 1.42854 1.14946 1.83758 1.43307 1.66418 1.13250 1.05884 1.18334 0.93960 0.88741 0.85972 1.21758 1.04829 1.02019 0.91484 1.21410 0.94337 0.93535 0.98588 1.22048 1.00508 0.95385 0.98551 1.20944 0.98683 0.94365 0.89380 1.17807 0.76805 0.85474 0.83620 1.43741 1.69961 1.15071 1.10531 1.90817 1.48686 1.65212 1.37251 1.67449 1.12297 1.06750 1.30828 0.94361 0.93006 0.92422 0.92101 0.75532 0.72954 0.83621 0.83404 0.83260 0.74761 0.76505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.42 8.96 37.16 0.33 -3.09 16 2 C 0.24 5.30 2.15 -69.08 -0.15 5.15 16 3 H 0.05 1.31 6.63 -51.93 -0.34 0.97 16 4 C -0.54 -14.11 9.31 -34.44 -0.32 -14.43 16 5 H 0.08 2.32 7.98 -52.49 -0.42 1.90 16 6 C 0.08 2.18 5.45 -17.82 -0.10 2.09 16 7 N -0.89 -25.61 13.96 55.43 0.77 -24.83 16 8 Si 0.89 20.73 24.37 -169.99 -4.14 16.59 16 9 H -0.27 -6.24 6.88 56.52 0.39 -5.85 16 10 H -0.26 -5.98 6.52 56.52 0.37 -5.61 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 N -0.66 -12.66 5.06 -55.39 -0.28 -12.94 16 13 C 0.50 8.72 7.85 -11.62 -0.09 8.62 16 14 O -0.54 -10.26 16.15 5.49 0.09 -10.17 16 15 C 0.50 7.52 7.84 -11.62 -0.09 7.43 16 16 O -0.46 -7.35 14.73 5.49 0.08 -7.27 16 17 N -0.64 -7.47 5.37 -11.85 -0.06 -7.54 16 18 C 0.36 4.11 7.42 -154.99 -1.15 2.96 16 19 C -0.18 -1.37 9.94 -39.11 -0.39 -1.76 16 20 C -0.05 -0.37 10.16 -39.35 -0.40 -0.77 16 21 C -0.14 -1.33 9.63 -39.03 -0.38 -1.70 16 22 C 0.11 1.26 6.75 -83.02 -0.56 0.70 16 23 C 0.58 7.32 8.08 -12.19 -0.10 7.22 16 24 N -0.83 -8.74 8.86 30.60 0.27 -8.47 16 25 O -0.54 -7.99 17.15 5.36 0.09 -7.90 16 26 N -0.46 -5.89 7.06 -8.94 -0.06 -5.95 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.05 1.12 3.28 -51.93 -0.17 0.95 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.41 7.41 8.01 -40.82 -0.33 7.08 16 32 H 0.43 4.04 8.18 -40.82 -0.33 3.71 16 33 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.15 0.52 8.06 -52.49 -0.42 0.10 16 35 H 0.15 1.25 7.63 -52.49 -0.40 0.85 16 36 H 0.42 4.68 8.16 -40.82 -0.33 4.34 16 37 H 0.40 3.39 8.93 -40.82 -0.36 3.02 16 LS Contribution 326.27 15.07 4.92 4.92 Total: -1.00 -32.64 326.27 -5.28 -37.92 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -3.56 Total: 13.22 kcal Atomic # 6 Polarization: 15.81 SS G_CDS: -3.39 Total: 12.42 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: 0.64 Total: -59.73 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: 0.26 Total: -25.34 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.14 Total: 16.59 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.64 -5.28 -37.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324357607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.751 kcal (2) G-P(sol) polarization free energy of solvation -32.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds