Wall clock time and date at job start Tue Mar 31 2020 04:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34106 * 125.82812 * 2 1 4 4 H 0.97004 * 125.34839 * 0.02562 * 3 2 1 5 5 C 1.37834 * 109.30605 * 180.16879 * 3 2 1 6 6 C 1.46851 * 125.80192 * 179.81489 * 5 3 2 7 7 O 1.21673 * 120.00303 * 179.69292 * 6 5 3 8 8 N 1.34773 * 119.99646 * 359.70000 * 6 5 3 9 9 C 1.47485 * 125.59698 * 0.03745 * 8 6 5 10 10 C 1.54323 * 107.03985 * 180.98920 * 9 8 6 11 11 C 1.55156 * 103.09857 * 22.23947 * 10 9 8 12 12 O 1.42903 * 111.00391 * 82.48633 * 11 10 9 13 13 C 1.50705 * 111.00550 * 206.29451 * 11 10 9 14 14 H 1.07998 * 119.99787 * 24.82983 * 13 11 10 15 15 C 1.37878 * 119.99951 * 204.83178 * 13 11 10 16 16 N 1.31512 * 119.99773 * 173.53226 * 15 13 11 17 17 Si 1.86799 * 120.00086 * 353.52844 * 15 13 11 18 18 H 1.48502 * 109.46882 * 87.32230 * 17 15 13 19 19 H 1.48494 * 109.47070 * 207.32063 * 17 15 13 20 20 H 1.48497 * 109.47359 * 327.32654 * 17 15 13 21 21 C 1.47429 * 125.64863 * 179.97438 * 8 6 5 22 22 C 1.36237 * 108.39923 * 359.55945 * 5 3 2 23 23 C 1.50704 * 126.50840 * 180.29631 * 22 5 3 24 24 C 1.38623 * 125.82464 * 179.68539 * 2 1 3 25 25 C 1.46613 * 126.52039 * 359.97438 * 24 2 1 26 26 O 1.21314 * 120.00369 * 180.02562 * 25 24 2 27 27 H 1.09009 * 109.46794 * 270.31492 * 1 2 3 28 28 H 1.08993 * 109.47307 * 30.31305 * 1 2 3 29 29 H 1.09001 * 109.47075 * 150.31994 * 1 2 3 30 30 H 1.09005 * 110.03266 * 61.62639 * 9 8 6 31 31 H 1.08996 * 109.96496 * 300.31836 * 9 8 6 32 32 H 1.09001 * 110.72110 * 263.79273 * 10 9 8 33 33 H 1.09000 * 110.71783 * 140.69093 * 10 9 8 34 34 H 0.96703 * 114.00656 * 56.20157 * 12 11 10 35 35 H 0.96997 * 119.99955 * 179.97438 * 16 15 13 36 36 H 1.08995 * 110.36486 * 37.08214 * 21 8 6 37 37 H 1.09006 * 110.45907 * 274.81165 * 21 8 6 38 38 H 1.08998 * 109.47114 * 90.00264 * 23 22 5 39 39 H 1.09000 * 109.46768 * 210.00232 * 23 22 5 40 40 H 1.08994 * 109.47302 * 329.99739 * 23 22 5 41 41 H 1.08007 * 119.99499 * 0.02562 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2920 1.0873 0.0000 4 1 1.9790 2.0055 0.0004 5 6 3.6134 0.6953 -0.0038 6 6 4.7757 1.5929 -0.0089 7 8 5.9013 1.1308 -0.0063 8 7 4.5956 2.9285 -0.0163 9 6 3.2924 3.6190 -0.0191 10 6 3.5834 5.1341 -0.0533 11 6 5.0183 5.2034 -0.6396 12 8 4.9934 5.1212 -2.0660 13 6 5.7275 6.4534 -0.1859 14 1 5.4316 6.9390 0.7322 15 6 6.7541 6.9769 -0.9429 16 7 7.2877 8.1338 -0.6168 17 14 7.3870 6.0429 -2.4317 18 1 6.5791 6.4057 -3.6238 19 1 8.8090 6.3976 -2.6708 20 1 7.2758 4.5829 -2.1842 21 6 5.6680 3.9401 -0.0214 22 6 3.6581 -0.6663 0.0037 23 6 4.8981 -1.5227 0.0091 24 6 2.3184 -1.1240 0.0062 25 6 1.8737 -2.5210 0.0144 26 8 2.6908 -3.4177 0.0197 27 1 -0.3633 0.0056 1.0278 28 1 -0.3633 0.8871 -0.5186 29 1 -0.3633 -0.8929 -0.5089 30 1 2.7352 3.3688 0.8838 31 1 2.7207 3.3313 -0.9015 32 1 3.5569 5.5547 0.9519 33 1 2.8758 5.6482 -0.7038 34 1 4.4443 5.7953 -2.4894 35 1 8.0101 8.5020 -1.1491 36 1 6.5035 3.6041 -0.6354 37 1 6.0036 4.1448 0.9953 38 1 5.1964 -1.7236 1.0380 39 1 4.6916 -2.4642 -0.4998 40 1 5.7031 -0.9997 -0.5072 41 1 0.8186 -2.7518 0.0157 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000862098708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:34:40 Heat of formation + Delta-G solvation = -68.122008 kcal Electronic energy + Delta-G solvation = -25676.572316 eV Core-core repulsion = 21943.665739 eV Total energy + Delta-G solvation = -3732.906577 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.86821 -39.47001 -38.46993 -37.62552 -35.03368 -32.93931 -32.49103 -32.14130 -30.45373 -28.89561 -28.23151 -26.79362 -25.22438 -23.87422 -23.03204 -20.60019 -20.07614 -19.75401 -19.07179 -17.75916 -17.34770 -16.45809 -15.88505 -15.62901 -15.27537 -15.13863 -14.69429 -14.67849 -14.43896 -13.93333 -13.78612 -13.57021 -13.34775 -13.16540 -12.96540 -12.65468 -12.57242 -12.41911 -12.25240 -12.10382 -11.94060 -11.69116 -11.55974 -11.10747 -10.68604 -10.44280 -10.34632 -9.92763 -9.56558 -9.33319 -8.99238 -8.70977 -8.65386 -8.45644 -8.11467 -6.29542 -4.43837 1.16604 1.55954 2.77786 3.06195 3.22203 3.40565 3.50466 3.51605 3.68088 4.27512 4.34451 4.42690 4.61117 4.66013 4.83594 4.90991 4.94115 4.99992 5.04981 5.15644 5.30047 5.32576 5.38111 5.61080 5.68155 5.78973 5.89390 5.99593 6.18788 6.26163 6.32833 6.38181 6.40328 6.55699 6.64090 6.73295 6.84291 7.06826 7.33573 7.51979 7.77782 8.01225 8.37625 8.49722 8.70064 9.31584 10.78759 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.025877 B = 0.003859 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.767260 B = 7253.123065 C = 7881.137730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.110 3.890 3 N -0.524 5.524 4 H 0.421 0.579 5 C -0.058 4.058 6 C 0.596 3.404 7 O -0.529 6.529 8 N -0.613 5.613 9 C 0.091 3.909 10 C -0.146 4.146 11 C 0.221 3.779 12 O -0.558 6.558 13 C -0.556 4.556 14 H 0.083 0.917 15 C 0.077 3.923 16 N -0.883 5.883 17 Si 0.947 3.053 18 H -0.292 1.292 19 H -0.323 1.323 20 H -0.268 1.268 21 C 0.114 3.886 22 C -0.016 4.016 23 C -0.095 4.095 24 C -0.291 4.291 25 C 0.410 3.590 26 O -0.472 6.472 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.371 0.629 35 H 0.268 0.732 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.477 -12.896 1.014 21.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.014 4.014 3 N -0.124 5.124 4 H 0.265 0.735 5 C -0.167 4.167 6 C 0.385 3.615 7 O -0.406 6.406 8 N -0.346 5.346 9 C -0.032 4.032 10 C -0.185 4.185 11 C 0.180 3.820 12 O -0.365 6.365 13 C -0.593 4.593 14 H 0.101 0.899 15 C -0.129 4.129 16 N -0.517 5.517 17 Si 0.782 3.218 18 H -0.219 1.219 19 H -0.254 1.254 20 H -0.194 1.194 21 C -0.006 4.006 22 C -0.023 4.023 23 C -0.152 4.152 24 C -0.299 4.299 25 C 0.270 3.730 26 O -0.346 6.346 27 H 0.104 0.896 28 H 0.094 0.906 29 H 0.109 0.891 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.219 0.781 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.861 -13.846 1.128 21.085 hybrid contribution -0.421 0.917 -0.784 1.278 sum -16.283 -12.929 0.344 20.794 Atomic orbital electron populations 1.20581 0.86691 1.04442 1.03859 1.21100 0.93698 0.86178 1.00467 1.42453 1.05923 1.09283 1.54724 0.73465 1.20018 0.82793 0.94230 1.19702 1.16701 0.87257 0.80223 0.77331 1.90803 1.23344 1.74953 1.51485 1.48726 1.09015 1.04745 1.72149 1.22265 0.86110 0.95790 0.99062 1.23285 1.00457 0.91361 1.03370 1.20231 0.90498 0.93351 0.77883 1.86181 1.70944 1.58158 1.21267 1.21103 1.19025 1.07997 1.11133 0.89906 1.25147 0.95129 0.94286 0.98354 1.69948 1.24790 1.17151 1.39849 0.85713 0.74452 0.80591 0.81072 1.21945 1.25432 1.19408 1.23008 0.90319 0.85952 1.01368 1.19857 0.94880 0.90897 0.96663 1.20478 0.93626 0.98450 1.02669 1.20431 0.92959 0.95141 1.21382 1.22968 0.94015 0.85770 0.70292 1.90508 1.58642 1.48984 1.36493 0.89576 0.90647 0.89101 0.92443 0.92243 0.89737 0.90383 0.78139 0.92211 0.90120 0.89938 0.91241 0.90689 0.89942 0.88859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.43 10.23 36.01 0.37 -0.06 16 2 C 0.11 1.03 7.22 -81.46 -0.59 0.44 16 3 N -0.52 -5.85 5.53 -5.55 -0.03 -5.88 16 4 H 0.42 3.83 4.81 -40.82 -0.20 3.63 16 5 C -0.06 -0.89 6.83 -82.40 -0.56 -1.45 16 6 C 0.60 11.23 7.83 -12.78 -0.10 11.13 16 7 O -0.53 -11.61 14.94 5.21 0.08 -11.54 16 8 N -0.61 -11.08 3.34 -171.61 -0.57 -11.66 16 9 C 0.09 1.25 5.12 -2.81 -0.01 1.24 16 10 C -0.15 -2.29 6.10 -24.90 -0.15 -2.44 16 11 C 0.22 4.57 0.70 -89.61 -0.06 4.51 16 12 O -0.56 -11.50 8.52 -35.23 -0.30 -11.80 16 13 C -0.56 -13.99 8.89 -34.44 -0.31 -14.30 16 14 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 15 C 0.08 2.08 5.46 -17.82 -0.10 1.98 16 16 N -0.88 -25.49 13.96 55.43 0.77 -24.71 16 17 Si 0.95 23.33 24.91 -169.99 -4.23 19.09 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.32 -8.22 7.11 56.52 0.40 -7.82 16 20 H -0.27 -6.80 5.40 56.52 0.31 -6.49 16 21 C 0.11 2.42 5.88 -2.52 -0.01 2.41 16 22 C -0.02 -0.25 6.21 -104.07 -0.65 -0.89 16 23 C -0.10 -1.48 9.27 36.01 0.33 -1.15 16 24 C -0.29 -3.48 6.13 -105.11 -0.64 -4.13 16 25 C 0.41 4.28 11.36 34.11 0.39 4.67 16 26 O -0.47 -6.76 15.82 5.53 0.09 -6.68 16 27 H 0.09 0.27 8.14 -51.92 -0.42 -0.15 16 28 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.09 0.25 7.56 -51.93 -0.39 -0.14 16 30 H 0.06 0.63 7.20 -51.93 -0.37 0.26 16 31 H 0.06 0.71 7.10 -51.93 -0.37 0.34 16 32 H 0.08 1.32 7.98 -51.93 -0.41 0.91 16 33 H 0.08 1.05 8.12 -51.93 -0.42 0.63 16 34 H 0.37 6.42 8.99 45.56 0.41 6.83 16 35 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.08 1.93 6.48 -51.93 -0.34 1.60 16 37 H 0.08 1.75 8.03 -51.93 -0.42 1.33 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.07 1.13 6.62 -51.93 -0.34 0.78 16 40 H 0.08 1.41 6.40 -51.93 -0.33 1.08 16 41 H 0.10 0.53 7.59 -52.48 -0.40 0.14 16 LS Contribution 331.48 15.07 5.00 5.00 Total: -1.00 -34.76 331.48 -5.81 -40.57 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -4.51 Total: 5.64 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -2.10 Total: 1.95 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: 0.17 Total: -42.25 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -0.13 Total: -30.01 kcal Atomic # 14 Polarization: 23.33 SS G_CDS: -4.23 Total: 19.09 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.76 -5.81 -40.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862098708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.549 kcal (2) G-P(sol) polarization free energy of solvation -34.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds