Wall clock time and date at job start Tue Mar 31 2020 04:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46656 * 2 1 4 4 O 1.42896 * 109.47095 * 240.00172 * 2 1 3 5 5 C 1.52998 * 109.47342 * 119.99774 * 2 1 3 6 6 H 1.09004 * 109.58345 * 316.67326 * 5 2 1 7 7 C 1.53189 * 109.58627 * 76.95583 * 5 2 1 8 8 C 1.53076 * 109.29454 * 174.28065 * 7 5 2 9 9 C 1.53037 * 109.66119 * 298.84751 * 8 7 5 10 10 C 1.53192 * 109.31136 * 61.30178 * 9 8 7 11 11 N 1.46927 * 109.58946 * 196.39080 * 5 2 1 12 12 S 1.65598 * 120.62618 * 6.58474 * 11 5 2 13 13 O 1.42102 * 106.39855 * 193.77203 * 12 11 5 14 14 O 1.42095 * 106.40382 * 326.69232 * 12 11 5 15 15 N 1.65595 * 107.22213 * 80.23644 * 12 11 5 16 16 C 1.46501 * 120.00137 * 269.99888 * 15 12 11 17 17 C 1.46506 * 120.00085 * 89.99474 * 15 12 11 18 18 C 1.50701 * 109.46777 * 95.00453 * 17 15 12 19 19 H 1.07991 * 120.00176 * 359.97438 * 18 17 15 20 20 C 1.37879 * 119.99589 * 179.97438 * 18 17 15 21 21 N 1.31510 * 120.00124 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99781 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46999 * 60.00325 * 22 20 18 24 24 H 1.48499 * 109.47223 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47331 * 300.00294 * 22 20 18 26 26 H 1.08993 * 109.47304 * 60.00335 * 1 2 3 27 27 H 1.09000 * 109.47332 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47048 * 299.99884 * 1 2 3 29 29 H 0.96695 * 114.00415 * 59.99866 * 4 2 1 30 30 H 1.08997 * 109.49988 * 294.37419 * 7 5 2 31 31 H 1.08998 * 109.49539 * 54.47417 * 7 5 2 32 32 H 1.09000 * 109.45137 * 178.75685 * 8 7 5 33 33 H 1.09003 * 109.33716 * 58.86660 * 8 7 5 34 34 H 1.08999 * 109.49839 * 301.35286 * 9 8 7 35 35 H 1.09001 * 109.49839 * 181.24875 * 9 8 7 36 36 H 1.09001 * 109.58870 * 185.58331 * 10 9 8 37 37 H 1.08996 * 109.58899 * 65.15196 * 10 9 8 38 38 H 1.09005 * 109.47115 * 89.99632 * 16 15 12 39 39 H 1.09000 * 109.47295 * 210.00213 * 16 15 12 40 40 H 1.08998 * 109.46803 * 330.00006 * 16 15 12 41 41 H 1.09003 * 109.46826 * 215.00140 * 17 15 12 42 42 H 1.08998 * 109.47190 * 335.00391 * 17 15 12 43 43 H 0.97005 * 120.00401 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2492 6 1 1.4575 -0.4076 2.1156 7 6 1.9041 -2.2352 1.0596 8 6 2.5456 -2.9536 2.2495 9 6 4.0338 -2.6042 2.3205 10 6 4.1905 -1.0942 2.5259 11 7 3.4563 -0.3938 1.4633 12 16 4.2106 0.7428 0.5245 13 8 5.6048 0.5920 0.7545 14 8 3.6215 0.6531 -0.7654 15 7 3.7958 2.2290 1.1257 16 6 2.6056 2.9175 0.6202 17 6 4.6191 2.8554 2.1632 18 6 5.6103 3.7913 1.5208 19 1 5.6258 3.9076 0.4473 20 6 6.4974 4.4991 2.3038 21 7 6.4781 4.3579 3.6112 22 14 7.7266 5.6587 1.5076 23 1 6.9982 6.7090 0.7516 24 1 8.5610 6.2937 2.5591 25 1 8.5981 4.8948 0.5790 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.7210 -0.2701 -1.9979 30 1 0.8488 -2.5008 0.9973 31 1 2.4098 -2.5336 0.1413 32 1 2.4308 -4.0307 2.1280 33 1 2.0540 -2.6375 3.1696 34 1 4.5211 -2.8973 1.3907 35 1 4.4925 -3.1344 3.1552 36 1 5.2460 -0.8265 2.4782 37 1 3.7837 -0.8134 3.4974 38 1 1.7404 2.6356 1.2204 39 1 2.7554 3.9954 0.6824 40 1 2.4353 2.6337 -0.4183 41 1 3.9796 3.4157 2.8453 42 1 5.1540 2.0842 2.7174 43 1 7.1025 4.8556 4.1621 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152195056.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:16:09 Heat of formation + Delta-G solvation = -109.468238 kcal Electronic energy + Delta-G solvation = -26148.034782 eV Core-core repulsion = 22548.779249 eV Total energy + Delta-G solvation = -3599.255533 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.19868 -37.10220 -35.77918 -35.44474 -34.97396 -32.49160 -32.28807 -31.85210 -29.23863 -27.82330 -25.13985 -24.41408 -23.89091 -22.20512 -21.13877 -20.34093 -18.14732 -17.36016 -17.17682 -16.33606 -16.13863 -15.85388 -14.91676 -14.70458 -14.46317 -14.18480 -13.81735 -13.72222 -13.60223 -13.31436 -13.16628 -12.77266 -12.68245 -12.20559 -12.16129 -11.95729 -11.64148 -11.42871 -11.17672 -11.10914 -11.06424 -11.00841 -10.93547 -10.76535 -10.69460 -10.47914 -10.33971 -10.03553 -10.00167 -9.75932 -9.29305 -8.71351 -8.42530 -8.02710 -6.05199 -4.09197 1.30045 3.34229 3.37821 3.42520 3.51730 4.12762 4.44340 4.50066 4.69175 4.79293 4.94044 5.04854 5.10737 5.18094 5.25675 5.29062 5.36778 5.51777 5.56252 5.60301 5.70771 5.78997 5.82168 5.89556 5.94451 5.95901 6.01588 6.06916 6.12591 6.25462 6.28194 6.44757 6.54774 6.57124 6.90097 7.25409 7.42959 7.63489 7.92232 8.07013 8.22142 8.92791 9.55845 11.03388 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.021446 B = 0.005377 C = 0.004842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.288435 B = 5205.919252 C = 5781.213482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.070 3.930 3 H 0.073 0.927 4 O -0.528 6.528 5 C 0.166 3.834 6 H 0.078 0.922 7 C -0.120 4.120 8 C -0.117 4.117 9 C -0.131 4.131 10 C 0.118 3.882 11 N -1.005 6.005 12 S 2.775 3.225 13 O -0.968 6.968 14 O -0.972 6.972 15 N -1.001 6.001 16 C 0.093 3.907 17 C 0.259 3.741 18 C -0.529 4.529 19 H 0.059 0.941 20 C 0.062 3.938 21 N -0.896 5.896 22 Si 0.896 3.104 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.274 1.274 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.372 0.628 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.064 0.936 38 H 0.038 0.962 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.033 0.967 42 H 0.036 0.964 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.223 -11.482 -2.855 17.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.010 3.990 3 H 0.090 0.910 4 O -0.333 6.333 5 C 0.059 3.941 6 H 0.096 0.904 7 C -0.159 4.159 8 C -0.155 4.155 9 C -0.170 4.170 10 C -0.008 4.008 11 N -0.843 5.843 12 S 2.784 3.216 13 O -0.952 6.952 14 O -0.955 6.955 15 N -0.843 5.843 16 C -0.054 4.054 17 C 0.137 3.863 18 C -0.568 4.568 19 H 0.077 0.923 20 C -0.140 4.140 21 N -0.535 5.535 22 Si 0.724 3.276 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.200 1.200 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.219 0.781 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.115 0.885 37 H 0.083 0.917 38 H 0.056 0.944 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.051 0.949 42 H 0.054 0.946 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.276 -11.955 -2.961 17.389 hybrid contribution 0.152 1.200 -0.271 1.239 sum -12.124 -10.755 -3.233 16.526 Atomic orbital electron populations 1.22513 0.96411 1.02609 1.02541 1.22348 0.92565 0.97333 0.86763 0.90952 1.86491 1.77205 1.54921 1.14645 1.20931 0.81590 0.95934 0.95629 0.90437 1.21775 1.00618 0.94016 0.99474 1.21504 0.95820 0.99683 0.98497 1.21863 0.96710 0.96084 1.02354 1.21406 0.97648 0.91692 0.90045 1.58421 1.19417 1.55646 1.50854 1.02308 0.73064 0.72414 0.73800 1.93584 1.29937 1.85845 1.85809 1.93608 1.77989 1.86114 1.37814 1.57802 1.36770 1.34211 1.55469 1.21408 0.86453 0.99852 0.97675 1.19003 0.88847 0.93467 0.85028 1.21452 1.17119 1.24465 0.93766 0.92314 1.24926 0.97231 0.97026 0.94801 1.69907 1.37662 1.42233 1.03748 0.86584 0.81226 0.80781 0.79030 1.20180 1.21135 1.19977 0.91983 0.91853 0.91742 0.78127 0.91574 0.90091 0.92119 0.92147 0.91564 0.91061 0.88470 0.91724 0.94366 0.90307 0.91517 0.94919 0.94614 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.78 9.38 37.16 0.35 -1.43 16 2 C 0.07 0.93 2.40 -26.73 -0.06 0.86 16 3 H 0.07 1.06 2.13 -51.83 -0.11 0.95 16 4 O -0.53 -7.65 9.11 -60.37 -0.55 -8.20 16 5 C 0.17 2.24 2.79 -67.60 -0.19 2.05 16 6 H 0.08 0.93 8.03 -51.93 -0.42 0.51 16 7 C -0.12 -1.43 4.98 -26.59 -0.13 -1.56 16 8 C -0.12 -1.26 5.88 -26.67 -0.16 -1.42 16 9 C -0.13 -1.61 6.08 -26.61 -0.16 -1.77 16 10 C 0.12 1.77 6.51 -3.71 -0.02 1.75 16 11 N -1.01 -16.49 3.35 -106.47 -0.36 -16.85 16 12 S 2.77 56.84 5.67 -107.50 -0.61 56.23 16 13 O -0.97 -24.04 15.50 -57.17 -0.89 -24.92 16 14 O -0.97 -19.42 11.09 -67.40 -0.75 -20.16 16 15 N -1.00 -20.98 3.23 -123.04 -0.40 -21.38 16 16 C 0.09 1.57 9.07 59.85 0.54 2.11 16 17 C 0.26 6.57 5.08 -5.19 -0.03 6.54 16 18 C -0.53 -15.02 9.38 -34.44 -0.32 -15.34 16 19 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 20 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 21 N -0.90 -26.29 13.29 55.43 0.74 -25.56 16 22 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.57 7.22 -51.93 -0.38 0.20 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.37 4.40 9.08 45.56 0.41 4.81 16 30 H 0.07 0.67 7.30 -51.93 -0.38 0.29 16 31 H 0.08 1.12 7.14 -51.93 -0.37 0.75 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.10 1.66 6.73 -51.93 -0.35 1.31 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.04 0.53 7.87 -51.93 -0.41 0.13 16 39 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 40 H 0.07 1.04 6.17 -51.93 -0.32 0.72 16 41 H 0.03 0.84 8.11 -51.93 -0.42 0.42 16 42 H 0.04 0.97 7.61 -51.93 -0.40 0.57 16 43 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 337.68 15.07 5.09 5.09 Total: -1.00 -33.58 337.68 -9.08 -42.66 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -6.06 Total: 2.66 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -0.28 Total: -6.53 kcal Atomic # 7 Polarization: -63.77 SS G_CDS: -0.02 Total: -63.78 kcal Atomic # 8 Polarization: -51.11 SS G_CDS: -2.18 Total: -53.29 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: 56.84 SS G_CDS: -0.61 Total: 56.23 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.58 -9.08 -42.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152195056.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.806 kcal (2) G-P(sol) polarization free energy of solvation -33.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds