Wall clock time and date at job start Tue Mar 31 2020 04:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 H 1.07996 * 119.99751 * 120.00006 * 4 2 1 6 6 C 1.37877 * 120.00001 * 300.00469 * 4 2 1 7 7 N 1.31517 * 120.00094 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99955 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47171 * 89.99544 * 8 6 4 10 10 H 1.48500 * 109.46632 * 209.99795 * 8 6 4 11 11 H 1.48494 * 109.47053 * 329.99231 * 8 6 4 12 12 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 13 13 C 1.46498 * 119.99673 * 300.00431 * 12 2 1 14 14 S 1.65593 * 119.99939 * 119.99951 * 12 2 1 15 15 O 1.42101 * 106.40455 * 203.53915 * 14 12 2 16 16 O 1.42093 * 106.40554 * 336.46252 * 14 12 2 17 17 N 1.65604 * 107.21648 * 90.00264 * 14 12 2 18 18 C 1.43427 * 120.63505 * 269.71995 * 17 14 12 19 19 C 1.54784 * 116.57753 * 269.49629 * 18 17 14 20 20 C 1.55198 * 108.79658 * 319.48976 * 19 18 17 21 21 O 1.39636 * 110.57206 * 322.07488 * 20 19 18 22 22 C 1.42379 * 108.63624 * 101.16888 * 21 20 19 23 23 H 1.09005 * 108.61566 * 28.57789 * 22 21 20 24 24 C 1.53003 * 108.50915 * 146.42147 * 22 21 20 25 25 C 1.46918 * 113.79356 * 267.45706 * 22 21 20 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 0.97000 * 120.00333 * 179.97438 * 7 6 4 30 30 H 1.08992 * 109.47421 * 89.99857 * 13 12 2 31 31 H 1.09007 * 109.46720 * 209.99867 * 13 12 2 32 32 H 1.09003 * 109.47218 * 329.99648 * 13 12 2 33 33 H 1.09002 * 108.12154 * 31.11092 * 18 17 14 34 34 H 1.08996 * 108.12556 * 147.59163 * 18 17 14 35 35 H 1.09000 * 109.66621 * 199.66322 * 19 18 17 36 36 H 1.08997 * 109.65362 * 79.30888 * 19 18 17 37 37 H 1.09007 * 109.25340 * 201.79168 * 20 19 18 38 38 H 1.08998 * 109.22834 * 82.34222 * 20 19 18 39 39 H 1.09004 * 109.47451 * 184.17706 * 24 22 21 40 40 H 1.09005 * 109.47068 * 304.17515 * 24 22 21 41 41 H 1.08993 * 109.47086 * 64.17184 * 24 22 21 42 42 H 1.08995 * 109.98711 * 297.49033 * 25 22 21 43 43 H 1.08992 * 109.99006 * 176.12152 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.6303 -0.5440 4.4119 10 1 1.3442 -0.9490 5.1122 11 1 2.4878 -2.5653 3.7123 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4280 14 16 2.9705 0.1142 -2.2862 15 8 2.8230 -0.5646 -3.5258 16 8 2.6905 1.4972 -2.1192 17 7 4.5438 -0.1043 -1.8179 18 6 5.1747 0.8206 -0.9213 19 6 5.9155 2.0160 -1.5679 20 6 6.6756 1.5129 -2.8241 21 8 7.2119 0.2437 -2.5975 22 6 6.3712 -0.7229 -3.2189 23 1 5.8818 -0.2592 -4.0754 24 6 7.2443 -1.8746 -3.7213 25 6 5.3390 -1.2707 -2.3284 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 0.7086 1.1614 3.4844 30 1 0.7377 -2.1444 -1.9993 31 1 2.4630 -2.5819 -1.9863 32 1 1.5295 -2.5969 -0.4708 33 1 4.4107 1.2219 -0.2554 34 1 5.8908 0.2683 -0.3130 35 1 6.6255 2.4363 -0.8556 36 1 5.1947 2.7800 -1.8590 37 1 7.4824 2.2076 -3.0582 38 1 5.9856 1.4666 -3.6665 39 1 6.6260 -2.5888 -4.2653 40 1 8.0160 -1.4832 -4.3842 41 1 7.7129 -2.3724 -2.8724 42 1 5.8061 -1.7963 -1.4956 43 1 4.6909 -1.9496 -2.8825 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331982992.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:20 Heat of formation + Delta-G solvation = -110.363330 kcal Electronic energy + Delta-G solvation = -25962.108500 eV Core-core repulsion = 22362.814153 eV Total energy + Delta-G solvation = -3599.294347 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.84771 -36.81346 -36.15612 -35.39533 -35.24343 -33.69426 -32.62208 -29.86835 -29.10132 -26.84035 -25.51943 -25.20185 -24.88924 -21.60164 -21.27725 -20.67268 -18.40379 -17.38769 -16.97842 -16.57201 -16.48797 -15.93065 -15.37612 -15.15985 -14.71348 -14.35933 -13.56956 -13.43319 -13.31907 -13.15981 -12.86391 -12.71357 -12.35109 -12.22389 -12.06715 -11.97952 -11.78897 -11.76574 -11.44471 -11.39554 -11.23050 -11.00708 -10.95997 -10.91115 -10.70921 -10.45612 -10.29870 -10.23215 -10.08515 -9.55616 -9.33763 -8.76740 -8.50512 -7.97438 -6.11935 -4.20602 1.16405 3.22802 3.30167 3.31178 3.38361 3.87040 4.03934 4.33301 4.70922 4.90311 4.97535 5.02480 5.15623 5.18457 5.18932 5.28923 5.31097 5.52100 5.56783 5.62649 5.69522 5.86373 5.91913 5.99468 6.02440 6.10871 6.14821 6.29059 6.33660 6.47784 6.62560 6.81403 6.85560 6.96206 7.09606 7.22116 7.47063 7.59840 7.75208 8.02287 8.23251 8.82703 9.45965 10.93019 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.016628 B = 0.005854 C = 0.005333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.484523 B = 4782.250672 C = 5249.341226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.267 3.733 3 H 0.058 0.942 4 C -0.526 4.526 5 H 0.063 0.937 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.990 5.990 13 C 0.107 3.893 14 S 2.777 3.223 15 O -0.999 6.999 16 O -0.976 6.976 17 N -1.002 6.002 18 C 0.130 3.870 19 C -0.168 4.168 20 C 0.054 3.946 21 O -0.349 6.349 22 C 0.062 3.938 23 H 0.065 0.935 24 C -0.154 4.154 25 C 0.104 3.896 26 H 0.011 0.989 27 H 0.032 0.968 28 H 0.093 0.907 29 H 0.264 0.736 30 H 0.042 0.958 31 H 0.047 0.953 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.051 0.949 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.084 0.916 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.627 -3.413 -9.223 13.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.165 3.835 3 H 0.075 0.925 4 C -0.565 4.565 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.832 5.832 13 C -0.039 4.039 14 S 2.787 3.213 15 O -0.983 6.983 16 O -0.960 6.960 17 N -0.839 5.839 18 C 0.003 3.997 19 C -0.208 4.208 20 C -0.024 4.024 21 O -0.267 6.267 22 C 0.002 3.998 23 H 0.083 0.917 24 C -0.212 4.212 25 C -0.021 4.021 26 H 0.031 0.969 27 H 0.051 0.949 28 H 0.111 0.889 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.102 0.898 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.401 -2.844 -9.713 13.813 hybrid contribution 0.181 -0.563 1.239 1.373 sum 9.582 -3.407 -8.474 13.237 Atomic orbital electron populations 1.22052 0.97957 0.99664 1.00736 1.18739 0.91902 0.92653 0.80250 0.92466 1.21369 1.31855 1.13169 0.90114 0.91905 1.24921 0.94913 0.94975 0.98974 1.69880 1.36146 1.22603 1.23837 0.86537 0.78614 0.79937 0.82518 1.20630 1.21188 1.19964 1.57772 1.64196 1.21386 1.39859 1.21177 0.98825 0.82068 1.01840 1.02038 0.72450 0.73532 0.73242 1.93520 1.86051 1.76412 1.42284 1.93576 1.83642 1.32087 1.86694 1.58192 1.29807 1.33730 1.62121 1.20481 0.98433 0.89936 0.90869 1.23359 0.99792 0.98977 0.98642 1.22578 0.97241 0.85535 0.96998 1.87662 1.46929 1.15215 1.76871 1.21477 0.91790 0.91666 0.94820 0.91706 1.21953 1.00181 0.97338 1.01736 1.21517 0.93682 0.88323 0.98604 0.96945 0.94865 0.88885 0.92616 0.93905 0.93403 0.90149 0.90127 0.90939 0.90204 0.90334 0.90726 0.93054 0.91090 0.91809 0.91612 0.89773 0.88285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 8.97 37.16 0.33 -3.10 16 2 C 0.27 6.48 2.62 -69.08 -0.18 6.30 16 3 H 0.06 1.54 6.91 -51.93 -0.36 1.18 16 4 C -0.53 -13.29 7.99 -34.44 -0.28 -13.56 16 5 H 0.06 1.55 7.33 -52.49 -0.38 1.17 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.08 11.32 55.43 0.63 -23.45 16 8 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 12 N -0.99 -20.55 3.12 -115.85 -0.36 -20.91 16 13 C 0.11 1.90 9.28 59.85 0.56 2.46 16 14 S 2.78 54.95 6.01 -107.50 -0.65 54.31 16 15 O -1.00 -20.07 16.00 -57.17 -0.92 -20.99 16 16 O -0.98 -22.09 15.78 -57.17 -0.90 -23.00 16 17 N -1.00 -16.68 2.97 -115.90 -0.34 -17.03 16 18 C 0.13 2.14 4.88 -4.73 -0.02 2.12 16 19 C -0.17 -2.37 6.74 -24.63 -0.17 -2.54 16 20 C 0.05 0.70 6.38 38.32 0.24 0.94 16 21 O -0.35 -4.71 9.83 -31.92 -0.31 -5.02 16 22 C 0.06 0.77 2.62 -29.64 -0.08 0.69 16 23 H 0.06 0.84 6.77 -51.93 -0.35 0.49 16 24 C -0.15 -1.48 9.41 37.16 0.35 -1.13 16 25 C 0.10 1.40 5.43 -4.93 -0.03 1.38 16 26 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 28 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 29 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.72 7.79 -51.92 -0.40 0.32 16 32 H 0.08 1.45 7.02 -51.93 -0.36 1.08 16 33 H 0.08 1.51 7.72 -51.93 -0.40 1.11 16 34 H 0.07 1.12 7.99 -51.93 -0.41 0.71 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.05 0.67 6.66 -51.93 -0.35 0.33 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.10 1.26 7.27 -51.93 -0.38 0.88 16 LS Contribution 346.31 15.07 5.22 5.22 Total: -1.00 -30.01 346.31 -9.07 -39.09 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -7.06 Total: 1.45 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 0.64 Total: -4.85 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: -0.08 Total: -61.39 kcal Atomic # 8 Polarization: -46.88 SS G_CDS: -2.13 Total: -49.01 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 16 Polarization: 54.95 SS G_CDS: -0.65 Total: 54.31 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.01 -9.07 -39.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331982992.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.274 kcal (2) G-P(sol) polarization free energy of solvation -30.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds