Wall clock time and date at job start Tue Mar 31 2020 04:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46959 * 89.99935 * 8 6 4 10 10 H 1.48491 * 109.47193 * 210.00326 * 8 6 4 11 11 H 1.48498 * 109.47096 * 330.00479 * 8 6 4 12 12 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 13 13 C 1.46500 * 119.99929 * 300.00372 * 12 2 1 14 14 S 1.65597 * 119.99996 * 119.99730 * 12 2 1 15 15 O 1.42101 * 106.40698 * 203.54280 * 14 12 2 16 16 O 1.42097 * 106.40520 * 336.46467 * 14 12 2 17 17 N 1.65604 * 107.21894 * 90.00242 * 14 12 2 18 18 C 1.46930 * 120.62992 * 89.99721 * 17 14 12 19 19 C 1.53193 * 108.77371 * 126.36905 * 18 17 14 20 20 C 1.53042 * 109.30997 * 54.64045 * 19 18 17 21 21 C 1.53044 * 109.53706 * 298.63241 * 20 19 18 22 22 H 1.09006 * 109.49559 * 301.41658 * 21 20 19 23 23 C 1.52998 * 109.49649 * 181.35442 * 21 20 19 24 24 O 1.42899 * 109.47517 * 64.99588 * 23 21 20 25 25 C 1.46923 * 120.63112 * 269.72120 * 17 14 12 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 30 30 H 1.08994 * 109.47032 * 89.99688 * 13 12 2 31 31 H 1.08998 * 109.46624 * 209.99482 * 13 12 2 32 32 H 1.08998 * 109.46783 * 329.99227 * 13 12 2 33 33 H 1.08996 * 109.58697 * 246.16541 * 18 17 14 34 34 H 1.08997 * 109.58611 * 6.44379 * 18 17 14 35 35 H 1.09002 * 109.49506 * 174.58508 * 19 18 17 36 36 H 1.08995 * 109.49832 * 294.68436 * 19 18 17 37 37 H 1.09003 * 109.46408 * 58.65320 * 20 19 18 38 38 H 1.08998 * 109.45773 * 178.62706 * 20 19 18 39 39 H 1.09002 * 109.46658 * 184.99977 * 23 21 20 40 40 H 1.08999 * 109.47078 * 304.99475 * 23 21 20 41 41 H 0.96702 * 113.99775 * 179.97438 * 24 23 21 42 42 H 1.08996 * 109.58919 * 353.42140 * 25 17 14 43 43 H 1.09008 * 109.58869 * 113.84029 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.6297 -0.5457 4.4124 10 1 1.3431 -0.9491 5.1120 11 1 2.4859 -2.5660 3.7121 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 16 2.9704 0.1141 -2.2862 15 8 2.8229 -0.5646 -3.5259 16 8 2.6904 1.4972 -2.1193 17 7 4.5438 -0.1042 -1.8179 18 6 5.3220 -1.2458 -2.3177 19 6 6.6222 -0.7231 -2.9368 20 6 7.3602 0.1397 -1.9106 21 6 6.4898 1.3396 -1.5301 22 1 6.2595 1.9198 -2.4237 23 6 7.2422 2.2194 -0.5298 24 8 8.3980 2.7757 -1.1596 25 6 5.1899 0.8434 -0.8996 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 0.7081 1.1610 3.4844 30 1 0.7377 -2.1444 -1.9993 31 1 2.4629 -2.5818 -1.9863 32 1 1.5296 -2.5968 -0.4707 33 1 5.5548 -1.9187 -1.4924 34 1 4.7443 -1.7796 -3.0723 35 1 7.2521 -1.5648 -3.2247 36 1 6.3906 -0.1235 -3.8170 37 1 7.5696 -0.4538 -1.0206 38 1 8.2976 0.4929 -2.3403 39 1 6.5897 3.0245 -0.1915 40 1 7.5489 1.6169 0.3252 41 1 8.9239 3.3464 -0.5827 42 1 4.5261 1.6891 -0.7206 43 1 5.4118 0.3445 0.0438 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407973708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:19:53 Heat of formation + Delta-G solvation = -133.689814 kcal Electronic energy + Delta-G solvation = -25514.506305 eV Core-core repulsion = 21914.200446 eV Total energy + Delta-G solvation = -3600.305859 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.80908 -36.77555 -36.46261 -36.13429 -35.24477 -32.62223 -32.40714 -31.49566 -29.09272 -25.88504 -25.49328 -25.20229 -24.25172 -21.98451 -20.73650 -20.03679 -18.36944 -17.42397 -17.23860 -16.76617 -16.42347 -15.58083 -15.16537 -14.86707 -14.44326 -14.31154 -14.13384 -13.63302 -13.47747 -13.08702 -13.04419 -12.73224 -12.63584 -12.10051 -12.00299 -11.77862 -11.59477 -11.47649 -11.39892 -11.22397 -10.99512 -10.96119 -10.91916 -10.80261 -10.44361 -10.42717 -10.39631 -10.22544 -10.08703 -9.92777 -9.32346 -8.70092 -8.51416 -7.95630 -6.12576 -4.21097 1.20105 3.20480 3.28678 3.30079 3.43603 4.04535 4.22308 4.31969 4.71467 4.84486 4.96451 5.00268 5.17758 5.25199 5.32240 5.38981 5.46993 5.55843 5.63350 5.70765 5.77784 5.89027 5.95766 6.01843 6.17054 6.18121 6.26051 6.30120 6.45864 6.46450 6.64126 6.80469 6.86749 6.93390 7.10470 7.48593 7.55815 7.60255 7.75572 8.02708 8.23536 8.82260 9.45220 10.92338 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.012850 B = 0.006318 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.467854 B = 4430.553192 C = 5567.945604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.267 3.733 3 H 0.058 0.942 4 C -0.524 4.524 5 H 0.063 0.937 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.991 5.991 13 C 0.108 3.892 14 S 2.780 3.220 15 O -0.996 6.996 16 O -0.979 6.979 17 N -1.004 6.004 18 C 0.120 3.880 19 C -0.131 4.131 20 C -0.106 4.106 21 C -0.101 4.101 22 H 0.079 0.921 23 C 0.081 3.919 24 O -0.574 6.574 25 C 0.131 3.869 26 H 0.032 0.968 27 H 0.012 0.988 28 H 0.092 0.908 29 H 0.264 0.736 30 H 0.042 0.958 31 H 0.048 0.952 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.377 0.623 42 H 0.095 0.905 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.097 -1.945 -5.437 12.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.165 3.835 3 H 0.075 0.925 4 C -0.564 4.564 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.833 5.833 13 C -0.039 4.039 14 S 2.791 3.209 15 O -0.980 6.980 16 O -0.963 6.963 17 N -0.841 5.841 18 C -0.006 4.006 19 C -0.170 4.170 20 C -0.144 4.144 21 C -0.121 4.121 22 H 0.098 0.902 23 C 0.002 3.998 24 O -0.379 6.379 25 C 0.005 3.995 26 H 0.051 0.949 27 H 0.031 0.969 28 H 0.111 0.889 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.223 0.777 42 H 0.113 0.887 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.446 -1.688 -6.565 12.453 hybrid contribution 0.600 -0.398 1.840 1.976 sum 11.046 -2.085 -4.725 12.194 Atomic orbital electron populations 1.22051 0.97981 0.99664 1.00731 1.18722 0.91889 0.92660 0.80275 0.92480 1.21374 1.31783 1.13098 0.90122 0.91929 1.24917 0.94962 0.94987 0.98938 1.69881 1.36136 1.22665 1.23798 0.86549 0.78565 0.79964 0.82585 1.20694 1.21196 1.19972 1.57786 1.64269 1.21386 1.39839 1.21166 0.98863 0.82067 1.01777 1.01883 0.72385 0.73439 0.73180 1.93521 1.85951 1.76373 1.42196 1.93563 1.83711 1.32275 1.86795 1.58163 1.30031 1.35121 1.60821 1.21370 0.92966 0.87747 0.98540 1.21874 0.96430 0.99908 0.98801 1.21452 0.98203 0.95699 0.99032 1.21409 0.95022 0.96334 0.99336 0.90221 1.22150 0.86824 0.96141 0.94648 1.86452 1.40012 1.68317 1.43116 1.21150 0.93657 0.92699 0.92027 0.94878 0.96913 0.88920 0.92636 0.93939 0.93333 0.90230 0.91580 0.89414 0.91033 0.91635 0.91968 0.91335 0.93029 0.93277 0.77670 0.88659 0.90887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 8.97 37.16 0.33 -3.10 16 2 C 0.27 6.45 2.62 -69.08 -0.18 6.27 16 3 H 0.06 1.52 6.91 -51.93 -0.36 1.16 16 4 C -0.52 -13.12 7.99 -34.44 -0.28 -13.40 16 5 H 0.06 1.53 7.33 -52.49 -0.38 1.15 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -23.87 11.32 55.43 0.63 -23.24 16 8 Si 0.90 19.94 29.54 -169.99 -5.02 14.92 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 12 N -0.99 -20.59 3.12 -115.85 -0.36 -20.95 16 13 C 0.11 1.93 9.29 59.85 0.56 2.48 16 14 S 2.78 55.62 6.10 -107.50 -0.66 54.96 16 15 O -1.00 -20.61 15.80 -57.17 -0.90 -21.51 16 16 O -0.98 -22.43 15.28 -57.17 -0.87 -23.31 16 17 N -1.00 -16.66 3.35 -113.77 -0.38 -17.05 16 18 C 0.12 1.63 6.48 -3.71 -0.02 1.61 16 19 C -0.13 -1.56 6.08 -26.61 -0.16 -1.72 16 20 C -0.11 -1.27 5.08 -26.69 -0.14 -1.41 16 21 C -0.10 -1.36 2.56 -90.72 -0.23 -1.59 16 22 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 23 C 0.08 0.94 6.43 37.16 0.24 1.18 16 24 O -0.57 -6.38 13.17 -35.23 -0.46 -6.84 16 25 C 0.13 2.05 5.73 -3.94 -0.02 2.03 16 26 H 0.03 0.73 7.67 -51.93 -0.40 0.33 16 27 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 29 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.75 7.79 -51.93 -0.40 0.34 16 32 H 0.08 1.44 7.02 -51.93 -0.36 1.08 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 1.20 6.92 -51.93 -0.36 0.84 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.81 7.79 -51.93 -0.40 0.40 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.38 2.44 9.12 45.56 0.42 2.85 16 42 H 0.10 1.66 6.91 -51.93 -0.36 1.30 16 43 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 LS Contribution 348.80 15.07 5.26 5.26 Total: -1.00 -31.09 348.80 -9.07 -40.16 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -6.30 Total: 3.69 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: 0.00 Total: -6.08 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: -0.12 Total: -61.24 kcal Atomic # 8 Polarization: -49.42 SS G_CDS: -2.24 Total: -51.66 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Atomic # 16 Polarization: 55.62 SS G_CDS: -0.66 Total: 54.96 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.09 -9.07 -40.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407973708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.532 kcal (2) G-P(sol) polarization free energy of solvation -31.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds