Wall clock time and date at job start Tue Mar 31 2020 04:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46959 * 89.99935 * 8 6 4 10 10 H 1.48491 * 109.47193 * 210.00326 * 8 6 4 11 11 H 1.48498 * 109.47096 * 330.00479 * 8 6 4 12 12 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 13 13 C 1.46500 * 119.99929 * 300.00372 * 12 2 1 14 14 S 1.65597 * 119.99996 * 119.99730 * 12 2 1 15 15 O 1.42101 * 106.40698 * 203.54280 * 14 12 2 16 16 O 1.42097 * 106.40520 * 336.46467 * 14 12 2 17 17 N 1.65604 * 107.21894 * 90.00242 * 14 12 2 18 18 C 1.46930 * 120.62992 * 89.99721 * 17 14 12 19 19 C 1.53193 * 108.77371 * 126.36905 * 18 17 14 20 20 C 1.53042 * 109.30997 * 54.64045 * 19 18 17 21 21 C 1.53044 * 109.53706 * 298.63241 * 20 19 18 22 22 H 1.09006 * 109.49559 * 301.41658 * 21 20 19 23 23 C 1.52998 * 109.49649 * 181.35442 * 21 20 19 24 24 O 1.42899 * 109.47517 * 64.99588 * 23 21 20 25 25 C 1.46923 * 120.63112 * 269.72120 * 17 14 12 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 30 30 H 1.08994 * 109.47032 * 89.99688 * 13 12 2 31 31 H 1.08998 * 109.46624 * 209.99482 * 13 12 2 32 32 H 1.08998 * 109.46783 * 329.99227 * 13 12 2 33 33 H 1.08996 * 109.58697 * 246.16541 * 18 17 14 34 34 H 1.08997 * 109.58611 * 6.44379 * 18 17 14 35 35 H 1.09002 * 109.49506 * 174.58508 * 19 18 17 36 36 H 1.08995 * 109.49832 * 294.68436 * 19 18 17 37 37 H 1.09003 * 109.46408 * 58.65320 * 20 19 18 38 38 H 1.08998 * 109.45773 * 178.62706 * 20 19 18 39 39 H 1.09002 * 109.46658 * 184.99977 * 23 21 20 40 40 H 1.08999 * 109.47078 * 304.99475 * 23 21 20 41 41 H 0.96702 * 113.99775 * 179.97438 * 24 23 21 42 42 H 1.08996 * 109.58919 * 353.42140 * 25 17 14 43 43 H 1.09008 * 109.58869 * 113.84029 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.6297 -0.5457 4.4124 10 1 1.3431 -0.9491 5.1120 11 1 2.4859 -2.5660 3.7121 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 16 2.9704 0.1141 -2.2862 15 8 2.8229 -0.5646 -3.5259 16 8 2.6904 1.4972 -2.1193 17 7 4.5438 -0.1042 -1.8179 18 6 5.3220 -1.2458 -2.3177 19 6 6.6222 -0.7231 -2.9368 20 6 7.3602 0.1397 -1.9106 21 6 6.4898 1.3396 -1.5301 22 1 6.2595 1.9198 -2.4237 23 6 7.2422 2.2194 -0.5298 24 8 8.3980 2.7757 -1.1596 25 6 5.1899 0.8434 -0.8996 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 0.7081 1.1610 3.4844 30 1 0.7377 -2.1444 -1.9993 31 1 2.4629 -2.5818 -1.9863 32 1 1.5296 -2.5968 -0.4707 33 1 5.5548 -1.9187 -1.4924 34 1 4.7443 -1.7796 -3.0723 35 1 7.2521 -1.5648 -3.2247 36 1 6.3906 -0.1235 -3.8170 37 1 7.5696 -0.4538 -1.0206 38 1 8.2976 0.4929 -2.3403 39 1 6.5897 3.0245 -0.1915 40 1 7.5489 1.6169 0.3252 41 1 8.9239 3.3464 -0.5827 42 1 4.5261 1.6891 -0.7206 43 1 5.4118 0.3445 0.0438 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407973708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:19:53 Heat of formation + Delta-G solvation = -157.193089 kcal Electronic energy + Delta-G solvation = -25515.525484 eV Core-core repulsion = 21914.200446 eV Total energy + Delta-G solvation = -3601.325038 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.89039 -38.43653 -37.87998 -37.40970 -36.92628 -34.49858 -33.53485 -32.56228 -30.92716 -27.26303 -27.03675 -26.82021 -25.44601 -23.01893 -22.56720 -21.14785 -19.82360 -18.77778 -18.50714 -18.28925 -18.20318 -17.16629 -16.57486 -16.15160 -15.68794 -15.42995 -15.31436 -15.13086 -15.00857 -14.49278 -14.46317 -14.12004 -13.73463 -13.68228 -13.48405 -13.32379 -13.19867 -12.98379 -12.97813 -12.83108 -12.74720 -12.70198 -12.18726 -12.13088 -12.05323 -11.90867 -11.81033 -11.50174 -11.39463 -11.16714 -10.82352 -10.48507 -9.98877 -9.63466 -8.07548 -6.22507 -0.36549 1.46133 1.48687 1.57339 1.95786 2.45819 2.52884 3.20688 3.21874 3.46767 3.62909 3.85954 4.00142 4.11355 4.19526 4.29481 4.35260 4.50379 4.55123 4.65475 4.68941 4.75393 4.78636 4.84427 4.89426 4.95111 4.99453 5.02621 5.13457 5.15288 5.24787 5.27861 5.33037 5.46101 5.55354 5.62767 5.76610 5.87901 6.11284 6.29780 6.86653 6.92624 7.47200 8.97140 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.012850 B = 0.006318 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.467854 B = 4430.553192 C = 5567.945604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.273 3.727 3 H 0.024 0.976 4 C -0.526 4.526 5 H 0.069 0.931 6 C 0.018 3.982 7 N -0.919 5.919 8 Si 0.958 3.042 9 H -0.276 1.276 10 H -0.290 1.290 11 H -0.266 1.266 12 N -0.997 5.997 13 C 0.101 3.899 14 S 2.790 3.210 15 O -1.004 7.004 16 O -1.016 7.016 17 N -1.001 6.001 18 C 0.111 3.889 19 C -0.128 4.128 20 C -0.100 4.100 21 C -0.100 4.100 22 H 0.061 0.939 23 C 0.084 3.916 24 O -0.586 6.586 25 C 0.130 3.870 26 H 0.043 0.957 27 H 0.016 0.984 28 H 0.070 0.930 29 H 0.263 0.737 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.047 0.953 40 H 0.065 0.935 41 H 0.397 0.603 42 H 0.069 0.931 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.113 -3.797 -5.171 14.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.169 3.831 3 H 0.042 0.958 4 C -0.565 4.565 5 H 0.088 0.912 6 C -0.182 4.182 7 N -0.558 5.558 8 Si 0.784 3.216 9 H -0.201 1.201 10 H -0.216 1.216 11 H -0.190 1.190 12 N -0.839 5.839 13 C -0.044 4.044 14 S 2.801 3.199 15 O -0.988 6.988 16 O -1.000 7.000 17 N -0.841 5.841 18 C -0.014 4.014 19 C -0.167 4.167 20 C -0.138 4.138 21 C -0.120 4.120 22 H 0.079 0.921 23 C 0.006 3.994 24 O -0.394 6.394 25 C 0.004 3.996 26 H 0.062 0.938 27 H 0.035 0.965 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.120 0.880 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.247 0.753 42 H 0.087 0.913 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 12.471 -3.553 -6.315 14.423 hybrid contribution 0.009 0.197 1.695 1.706 sum 12.480 -3.356 -4.620 13.724 Atomic orbital electron populations 1.21949 0.98068 1.00021 0.99830 1.18403 0.91824 0.91385 0.81507 0.95827 1.21581 1.31449 1.13029 0.90434 0.91244 1.25668 0.95172 0.95581 1.01766 1.70020 1.37379 1.24086 1.24294 0.85563 0.77915 0.79220 0.78934 1.20125 1.21595 1.19008 1.57697 1.65051 1.22479 1.38639 1.21370 1.00336 0.80524 1.02217 1.01383 0.73049 0.72477 0.72946 1.93501 1.86491 1.76276 1.42517 1.93512 1.84687 1.34626 1.87203 1.57928 1.28880 1.36326 1.60976 1.21692 0.93354 0.86957 0.99358 1.21893 0.95861 1.00805 0.98163 1.21425 0.97847 0.94953 0.99562 1.21366 0.94434 0.97349 0.98892 0.92083 1.22047 0.86981 0.96033 0.94368 1.86393 1.39920 1.68923 1.44196 1.21186 0.94131 0.91838 0.92458 0.93756 0.96519 0.91116 0.92765 0.93209 0.90683 0.90407 0.89675 0.89360 0.87988 0.92736 0.90719 0.90745 0.93492 0.91680 0.75286 0.91299 0.90126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.70 8.97 71.98 0.65 -6.06 16 2 C 0.27 13.35 2.62 44.25 0.12 13.46 16 3 H 0.02 1.32 6.91 -2.39 -0.02 1.30 16 4 C -0.53 -26.12 7.99 25.60 0.20 -25.91 16 5 H 0.07 3.29 7.33 -2.91 -0.02 3.27 16 6 C 0.02 0.91 5.30 84.65 0.45 1.36 16 7 N -0.92 -50.20 11.32 21.44 0.24 -49.96 16 8 Si 0.96 40.27 29.54 68.60 2.03 42.30 16 9 H -0.28 -11.28 7.11 99.48 0.71 -10.58 16 10 H -0.29 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 12 N -1.00 -41.17 3.12 -520.45 -1.62 -42.79 16 13 C 0.10 3.45 9.29 127.77 1.19 4.64 16 14 S 2.79 112.04 6.10 -56.49 -0.34 111.70 16 15 O -1.00 -40.85 15.80 -128.00 -2.02 -42.87 16 16 O -1.02 -48.26 15.28 -128.00 -1.96 -50.22 16 17 N -1.00 -32.50 3.35 -513.85 -1.72 -34.22 16 18 C 0.11 2.77 6.48 86.36 0.56 3.33 16 19 C -0.13 -2.70 6.08 30.67 0.19 -2.52 16 20 C -0.10 -2.14 5.08 30.62 0.16 -1.98 16 21 C -0.10 -2.60 2.56 -10.86 -0.03 -2.63 16 22 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 23 C 0.08 1.84 6.43 71.98 0.46 2.30 16 24 O -0.59 -11.92 13.17 -148.98 -1.96 -13.89 16 25 C 0.13 4.05 5.73 86.22 0.49 4.54 16 26 H 0.04 1.97 7.67 -2.39 -0.02 1.95 16 27 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.07 3.73 6.07 -2.38 -0.01 3.72 16 29 H 0.26 13.73 8.31 -92.70 -0.77 12.96 16 30 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.07 2.14 7.79 -2.39 -0.02 2.12 16 32 H 0.08 2.68 7.02 -2.39 -0.02 2.67 16 33 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.09 2.21 6.92 -2.39 -0.02 2.19 16 35 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.07 1.54 7.79 -2.39 -0.02 1.52 16 39 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.40 4.30 9.12 -74.06 -0.68 3.62 16 42 H 0.07 2.51 6.91 -2.39 -0.02 2.49 16 43 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 Total: -1.00 -66.46 348.80 -2.61 -69.07 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: 0.32 Total: 20.35 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 4.43 Total: -9.46 kcal Atomic # 7 Polarization: -123.88 SS G_CDS: -3.10 Total: -126.98 kcal Atomic # 8 Polarization: -101.04 SS G_CDS: -5.94 Total: -106.98 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.03 Total: 42.30 kcal Atomic # 16 Polarization: 112.04 SS G_CDS: -0.34 Total: 111.70 kcal Total: -66.46 -2.61 -69.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407973708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.120 kcal (2) G-P(sol) polarization free energy of solvation -66.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds