Wall clock time and date at job start Tue Mar 31 2020 04:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47256 * 90.00491 * 8 6 4 10 10 H 1.48506 * 109.46930 * 210.00332 * 8 6 4 11 11 H 1.48499 * 109.47104 * 330.00193 * 8 6 4 12 12 N 1.46505 * 109.47212 * 120.00008 * 2 1 3 13 13 C 1.46498 * 119.99673 * 60.00290 * 12 2 1 14 14 S 1.65593 * 119.99939 * 239.99810 * 12 2 1 15 15 O 1.42101 * 106.40455 * 203.53915 * 14 12 2 16 16 O 1.42093 * 106.40554 * 336.46252 * 14 12 2 17 17 N 1.65604 * 107.21648 * 90.00264 * 14 12 2 18 18 C 1.47150 * 120.98088 * 89.99934 * 17 14 12 19 19 C 1.53293 * 108.38423 * 230.51012 * 18 17 14 20 20 O 1.42968 * 109.22466 * 307.70003 * 19 18 17 21 21 C 1.42957 * 114.16499 * 62.57715 * 20 19 18 22 22 H 1.09008 * 109.51449 * 57.34804 * 21 20 19 23 23 C 1.52999 * 109.51433 * 177.44531 * 21 20 19 24 24 C 1.47150 * 120.98019 * 269.71472 * 17 14 12 25 25 H 1.08998 * 109.68426 * 9.76831 * 24 17 14 26 26 C 1.52999 * 109.68357 * 249.21091 * 24 17 14 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 29 29 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 30 30 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 31 31 H 1.08992 * 109.47421 * 89.99857 * 13 12 2 32 32 H 1.09007 * 109.46720 * 209.99867 * 13 12 2 33 33 H 1.09003 * 109.47218 * 329.99648 * 13 12 2 34 34 H 1.08999 * 109.68242 * 350.23586 * 18 17 14 35 35 H 1.09006 * 109.68233 * 110.75315 * 18 17 14 36 36 H 1.09003 * 109.51117 * 67.62153 * 19 18 17 37 37 H 1.08996 * 109.51377 * 187.77391 * 19 18 17 38 38 H 1.09000 * 109.47039 * 59.99539 * 23 21 20 39 39 H 1.09003 * 109.47546 * 179.97438 * 23 21 20 40 40 H 1.09008 * 109.46977 * 300.00503 * 23 21 20 41 41 H 1.09002 * 109.47166 * 60.00297 * 26 24 17 42 42 H 1.09001 * 109.47367 * 180.02562 * 26 24 17 43 43 H 1.09006 * 109.47065 * 300.00430 * 26 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.3426 -2.1616 -4.4119 10 1 2.4864 -0.1413 -5.1123 11 1 3.6292 -1.7582 -3.7122 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4279 14 16 2.9704 0.1141 2.2862 15 8 3.7119 -0.8789 2.9814 16 8 3.5794 1.1829 1.5748 17 7 1.9607 0.8090 3.3998 18 6 1.5657 0.0861 4.6191 19 6 0.0393 0.1489 4.7454 20 8 -0.3854 1.5107 4.6489 21 6 -0.0875 2.1291 3.3949 22 1 -0.5439 1.5552 2.5884 23 6 -0.6416 3.5552 3.3841 24 6 1.4369 2.1698 3.2022 25 1 1.6717 2.5108 2.1939 26 6 2.0646 3.1173 4.2265 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3635 0.5138 -0.8899 30 1 0.7092 1.1618 -3.4843 31 1 2.4157 -2.7377 0.9716 32 1 1.6238 -2.2853 2.5002 33 1 0.6904 -2.3002 0.9846 34 1 1.8859 -0.9535 4.5495 35 1 2.0262 0.5545 5.4890 36 1 -0.4166 -0.4322 3.9438 37 1 -0.2634 -0.2594 5.7096 38 1 -0.1836 4.1291 4.1897 39 1 -0.4137 4.0263 2.4279 40 1 -1.7218 3.5265 3.5272 41 1 3.1471 3.1247 4.0991 42 1 1.6741 4.1240 4.0774 43 1 1.8195 2.7783 5.2331 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407977431.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:11 Heat of formation + Delta-G solvation = -114.665396 kcal Electronic energy + Delta-G solvation = -26189.789747 eV Core-core repulsion = 22590.308848 eV Total energy + Delta-G solvation = -3599.480898 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.60321 -36.80129 -36.19962 -35.28620 -34.91834 -33.45405 -32.61165 -29.14437 -28.79562 -28.19816 -25.64015 -25.18027 -24.37152 -23.07794 -20.89305 -19.76283 -18.42386 -17.53074 -16.94460 -16.59892 -16.30235 -15.87956 -15.34475 -15.06005 -14.75844 -14.37395 -13.75957 -13.56807 -13.24375 -13.13551 -12.88106 -12.80942 -12.29851 -12.05822 -11.96100 -11.82939 -11.75628 -11.66551 -11.57436 -11.44564 -11.28310 -11.21621 -11.02757 -10.87793 -10.83313 -10.56720 -10.35150 -10.23779 -10.14952 -9.89525 -9.30319 -8.64789 -8.48829 -8.00252 -6.10652 -4.17041 1.09127 3.26320 3.33128 3.33893 3.38724 3.75881 4.01949 4.37685 4.61723 4.79027 4.88214 5.05196 5.10127 5.18883 5.21219 5.36285 5.37404 5.47507 5.51948 5.56984 5.67504 5.75583 5.82403 5.92972 5.96891 6.05967 6.09363 6.29800 6.30668 6.39013 6.55566 6.64341 6.73449 6.80015 6.96355 7.20869 7.41815 7.59171 7.74637 7.99887 8.23773 8.85103 9.48957 10.95017 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.018716 B = 0.005790 C = 0.005248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.695256 B = 4835.126972 C = 5333.883113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.269 3.731 3 H 0.057 0.943 4 C -0.520 4.520 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.990 5.990 13 C 0.111 3.889 14 S 2.776 3.224 15 O -0.993 6.993 16 O -0.970 6.970 17 N -1.010 6.010 18 C 0.090 3.910 19 C 0.051 3.949 20 O -0.376 6.376 21 C 0.078 3.922 22 H 0.071 0.929 23 C -0.146 4.146 24 C 0.122 3.878 25 H 0.106 0.894 26 C -0.156 4.156 27 H 0.033 0.967 28 H 0.009 0.991 29 H 0.093 0.907 30 H 0.263 0.737 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.100 0.900 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.069 0.931 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.292 1.466 13.685 14.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.166 3.834 3 H 0.075 0.925 4 C -0.560 4.560 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.833 5.833 13 C -0.036 4.036 14 S 2.787 3.213 15 O -0.977 6.977 16 O -0.953 6.953 17 N -0.848 5.848 18 C -0.036 4.036 19 C -0.028 4.028 20 O -0.295 6.295 21 C 0.019 3.981 22 H 0.089 0.911 23 C -0.204 4.204 24 C 0.015 3.985 25 H 0.124 0.876 26 C -0.215 4.215 27 H 0.052 0.948 28 H 0.028 0.972 29 H 0.112 0.888 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.118 0.882 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.480 1.725 13.679 14.220 hybrid contribution 0.032 -0.763 -1.119 1.355 sum -3.447 0.962 12.560 13.060 Atomic orbital electron populations 1.22151 0.98307 0.99729 1.00500 1.18722 0.91214 0.92912 0.80566 0.92508 1.21326 1.31610 1.13007 0.90022 0.91987 1.24900 0.94949 0.94989 0.98992 1.69846 1.36582 1.22642 1.23816 0.86495 0.79303 0.79304 0.82308 1.20645 1.21090 1.19850 1.57790 1.70034 1.19783 1.35694 1.21134 1.01737 0.82143 0.98566 1.02124 0.73813 0.73091 0.72292 1.93527 1.69063 1.60447 1.74694 1.93591 1.73793 1.55852 1.72101 1.58694 1.67660 1.23997 1.34447 1.21971 0.96118 0.97483 0.88032 1.22905 0.93491 0.83952 1.02434 1.87888 1.80582 1.25322 1.35663 1.22597 0.93533 0.95199 0.86747 0.91091 1.21842 1.01560 0.93989 1.02993 1.21666 0.93864 0.81618 1.01323 0.87615 1.22069 1.00898 0.98954 0.99548 0.94772 0.97188 0.88803 0.92680 0.93235 0.93557 0.90969 0.88896 0.90819 0.92496 0.88225 0.91415 0.90506 0.91756 0.92352 0.91183 0.91858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 8.95 37.16 0.33 -2.89 16 2 C 0.27 6.42 2.62 -69.08 -0.18 6.24 16 3 H 0.06 1.50 6.91 -51.93 -0.36 1.15 16 4 C -0.52 -13.86 8.37 -34.44 -0.29 -14.14 16 5 H 0.06 1.66 7.65 -52.49 -0.40 1.26 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.30 11.32 55.43 0.63 -23.67 16 8 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 N -0.99 -20.34 3.12 -115.85 -0.36 -20.70 16 13 C 0.11 1.94 9.53 59.85 0.57 2.51 16 14 S 2.78 55.15 6.07 -107.50 -0.65 54.49 16 15 O -0.99 -20.69 16.01 -57.17 -0.92 -21.60 16 16 O -0.97 -22.59 15.49 -57.17 -0.89 -23.47 16 17 N -1.01 -15.82 3.09 -105.80 -0.33 -16.14 16 18 C 0.09 1.14 6.17 -3.54 -0.02 1.11 16 19 C 0.05 0.57 6.98 37.31 0.26 0.83 16 20 O -0.38 -4.89 10.01 -35.23 -0.35 -5.24 16 21 C 0.08 1.04 3.11 -26.36 -0.08 0.96 16 22 H 0.07 1.04 6.64 -51.92 -0.34 0.69 16 23 C -0.15 -1.60 9.03 37.16 0.34 -1.27 16 24 C 0.12 1.79 2.79 -67.20 -0.19 1.60 16 25 H 0.11 1.74 7.24 -51.93 -0.38 1.36 16 26 C -0.16 -1.96 8.65 37.16 0.32 -1.64 16 27 H 0.03 0.71 6.66 -51.93 -0.35 0.36 16 28 H 0.01 0.18 6.64 -51.93 -0.34 -0.17 16 29 H 0.09 2.29 6.07 -51.93 -0.32 1.97 16 30 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.05 0.67 7.79 -51.92 -0.40 0.27 16 33 H 0.07 1.22 6.43 -51.93 -0.33 0.88 16 34 H 0.09 1.13 7.25 -51.93 -0.38 0.75 16 35 H 0.07 0.85 7.65 -51.93 -0.40 0.45 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.68 6.38 -51.93 -0.33 0.35 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.75 6.45 -51.93 -0.33 0.41 16 43 H 0.06 0.76 7.21 -51.93 -0.37 0.38 16 LS Contribution 341.61 15.07 5.15 5.15 Total: -1.00 -31.34 341.61 -8.49 -39.82 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -6.71 Total: 0.48 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: 0.96 Total: -5.07 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: -0.06 Total: -60.52 kcal Atomic # 8 Polarization: -48.16 SS G_CDS: -2.15 Total: -50.32 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 55.15 SS G_CDS: -0.65 Total: 54.49 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.34 -8.49 -39.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407977431.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.843 kcal (2) G-P(sol) polarization free energy of solvation -31.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds