Wall clock time and date at job start Tue Mar 31 2020 04:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47256 * 90.00491 * 8 6 4 10 10 H 1.48506 * 109.46930 * 210.00332 * 8 6 4 11 11 H 1.48499 * 109.47104 * 330.00193 * 8 6 4 12 12 N 1.46505 * 109.47212 * 120.00008 * 2 1 3 13 13 C 1.46498 * 119.99673 * 60.00290 * 12 2 1 14 14 S 1.65593 * 119.99939 * 239.99810 * 12 2 1 15 15 O 1.42101 * 106.40455 * 203.53915 * 14 12 2 16 16 O 1.42093 * 106.40554 * 336.46252 * 14 12 2 17 17 N 1.65604 * 107.21648 * 90.00264 * 14 12 2 18 18 C 1.47150 * 120.98088 * 89.99934 * 17 14 12 19 19 C 1.53293 * 108.38423 * 230.51012 * 18 17 14 20 20 O 1.42968 * 109.22466 * 307.70003 * 19 18 17 21 21 C 1.42957 * 114.16499 * 62.57715 * 20 19 18 22 22 H 1.09008 * 109.51449 * 57.34804 * 21 20 19 23 23 C 1.52999 * 109.51433 * 177.44531 * 21 20 19 24 24 C 1.47150 * 120.98019 * 269.71472 * 17 14 12 25 25 H 1.08998 * 109.68426 * 9.76831 * 24 17 14 26 26 C 1.52999 * 109.68357 * 249.21091 * 24 17 14 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 29 29 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 30 30 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 31 31 H 1.08992 * 109.47421 * 89.99857 * 13 12 2 32 32 H 1.09007 * 109.46720 * 209.99867 * 13 12 2 33 33 H 1.09003 * 109.47218 * 329.99648 * 13 12 2 34 34 H 1.08999 * 109.68242 * 350.23586 * 18 17 14 35 35 H 1.09006 * 109.68233 * 110.75315 * 18 17 14 36 36 H 1.09003 * 109.51117 * 67.62153 * 19 18 17 37 37 H 1.08996 * 109.51377 * 187.77391 * 19 18 17 38 38 H 1.09000 * 109.47039 * 59.99539 * 23 21 20 39 39 H 1.09003 * 109.47546 * 179.97438 * 23 21 20 40 40 H 1.09008 * 109.46977 * 300.00503 * 23 21 20 41 41 H 1.09002 * 109.47166 * 60.00297 * 26 24 17 42 42 H 1.09001 * 109.47367 * 180.02562 * 26 24 17 43 43 H 1.09006 * 109.47065 * 300.00430 * 26 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.3426 -2.1616 -4.4119 10 1 2.4864 -0.1413 -5.1123 11 1 3.6292 -1.7582 -3.7122 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4279 14 16 2.9704 0.1141 2.2862 15 8 3.7119 -0.8789 2.9814 16 8 3.5794 1.1829 1.5748 17 7 1.9607 0.8090 3.3998 18 6 1.5657 0.0861 4.6191 19 6 0.0393 0.1489 4.7454 20 8 -0.3854 1.5107 4.6489 21 6 -0.0875 2.1291 3.3949 22 1 -0.5439 1.5552 2.5884 23 6 -0.6416 3.5552 3.3841 24 6 1.4369 2.1698 3.2022 25 1 1.6717 2.5108 2.1939 26 6 2.0646 3.1173 4.2265 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3635 0.5138 -0.8899 30 1 0.7092 1.1618 -3.4843 31 1 2.4157 -2.7377 0.9716 32 1 1.6238 -2.2853 2.5002 33 1 0.6904 -2.3002 0.9846 34 1 1.8859 -0.9535 4.5495 35 1 2.0262 0.5545 5.4890 36 1 -0.4166 -0.4322 3.9438 37 1 -0.2634 -0.2594 5.7096 38 1 -0.1836 4.1291 4.1897 39 1 -0.4137 4.0263 2.4279 40 1 -1.7218 3.5265 3.5272 41 1 3.1471 3.1247 4.0991 42 1 1.6741 4.1240 4.0774 43 1 1.8195 2.7783 5.2331 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407977431.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:10 Heat of formation + Delta-G solvation = -137.190227 kcal Electronic energy + Delta-G solvation = -26190.766497 eV Core-core repulsion = 22590.308848 eV Total energy + Delta-G solvation = -3600.457648 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.65431 -38.46758 -37.92647 -36.95498 -36.04977 -34.56110 -34.45895 -30.94539 -29.76486 -29.27284 -27.32379 -27.02651 -25.42642 -24.08519 -22.64430 -20.99587 -19.77728 -19.03410 -18.63457 -18.22408 -17.65477 -17.10828 -16.83307 -16.43813 -15.98759 -15.73994 -15.25961 -14.97937 -14.78295 -14.60489 -14.15907 -13.89604 -13.73481 -13.46064 -13.30760 -13.21972 -13.18832 -13.07037 -13.03423 -12.82228 -12.76578 -12.63189 -12.62218 -12.43213 -12.29535 -12.20596 -11.95961 -11.84934 -11.32411 -11.15189 -11.14073 -10.51552 -9.79627 -9.68398 -8.13648 -6.27101 -0.45324 1.40400 1.42754 1.51933 1.91575 2.39945 2.50570 2.81500 3.14456 3.24526 3.60701 3.75734 4.01225 4.03608 4.06761 4.20827 4.33123 4.40366 4.47797 4.56227 4.63495 4.71279 4.78604 4.81012 4.90255 4.94488 4.97622 4.99779 5.06538 5.11980 5.12381 5.15338 5.31237 5.37872 5.49999 5.59719 5.76315 5.85355 6.11616 6.22844 6.28180 6.79756 7.41838 8.90300 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.018716 B = 0.005790 C = 0.005248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.695256 B = 4835.126972 C = 5333.883113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.276 3.724 3 H 0.023 0.977 4 C -0.541 4.541 5 H 0.053 0.947 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.954 3.046 9 H -0.269 1.269 10 H -0.282 1.282 11 H -0.277 1.277 12 N -0.998 5.998 13 C 0.104 3.896 14 S 2.787 3.213 15 O -1.005 7.005 16 O -1.012 7.012 17 N -1.003 6.003 18 C 0.082 3.918 19 C 0.050 3.950 20 O -0.377 6.377 21 C 0.083 3.917 22 H 0.055 0.945 23 C -0.144 4.144 24 C 0.114 3.886 25 H 0.080 0.920 26 C -0.151 4.151 27 H 0.041 0.959 28 H 0.033 0.967 29 H 0.068 0.932 30 H 0.265 0.735 31 H 0.040 0.960 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.054 0.946 37 H 0.134 0.866 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.045 0.955 42 H 0.090 0.910 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.369 0.999 15.290 16.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.172 3.828 3 H 0.041 0.959 4 C -0.581 4.581 5 H 0.072 0.928 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.779 3.221 9 H -0.194 1.194 10 H -0.208 1.208 11 H -0.202 1.202 12 N -0.839 5.839 13 C -0.041 4.041 14 S 2.799 3.201 15 O -0.989 6.989 16 O -0.996 6.996 17 N -0.845 5.845 18 C -0.043 4.043 19 C -0.028 4.028 20 O -0.296 6.296 21 C 0.024 3.976 22 H 0.073 0.927 23 C -0.202 4.202 24 C 0.008 3.992 25 H 0.098 0.902 26 C -0.210 4.210 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.118 0.882 35 H 0.108 0.892 36 H 0.073 0.927 37 H 0.152 0.848 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.065 0.935 42 H 0.109 0.891 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.556 1.232 15.293 16.005 hybrid contribution 0.381 -0.618 -1.523 1.687 sum -4.175 0.614 13.770 14.402 Atomic orbital electron populations 1.21916 0.96700 1.00139 1.00401 1.18378 0.92249 0.91164 0.81043 0.95913 1.21634 1.31795 1.13046 0.91577 0.92841 1.25600 0.95190 0.95690 1.01519 1.69956 1.37151 1.23466 1.24392 0.85627 0.78729 0.78513 0.79183 1.19401 1.20797 1.20202 1.57685 1.69978 1.21052 1.35219 1.21337 1.01708 0.80319 1.00768 1.01526 0.73924 0.72366 0.72288 1.93499 1.69820 1.60867 1.74719 1.93529 1.75322 1.57230 1.73518 1.58349 1.67155 1.24489 1.34469 1.22315 0.97441 0.97675 0.86858 1.23092 0.92187 0.83288 1.04262 1.87896 1.80487 1.26140 1.35079 1.22529 0.92083 0.96412 0.86620 0.92747 1.21857 1.02137 0.92588 1.03589 1.21830 0.95271 0.81305 1.00772 0.90216 1.22056 1.00031 0.99555 0.99331 0.93955 0.94773 0.91352 0.92564 0.94121 0.90264 0.90281 0.88247 0.89179 0.92747 0.84792 0.90093 0.90483 0.90832 0.93545 0.89132 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.79 8.95 71.98 0.64 -5.15 16 2 C 0.28 13.46 2.62 44.24 0.12 13.57 16 3 H 0.02 1.27 6.91 -2.39 -0.02 1.26 16 4 C -0.54 -29.35 8.37 25.60 0.21 -29.14 16 5 H 0.05 2.91 7.65 -2.91 -0.02 2.89 16 6 C 0.02 1.09 5.30 84.65 0.45 1.54 16 7 N -0.91 -50.51 11.32 21.45 0.24 -50.27 16 8 Si 0.95 43.23 29.54 68.60 2.03 45.26 16 9 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 12 N -1.00 -41.13 3.12 -520.44 -1.62 -42.76 16 13 C 0.10 3.56 9.53 127.77 1.22 4.77 16 14 S 2.79 111.47 6.07 -56.49 -0.34 111.13 16 15 O -1.01 -41.35 16.01 -128.00 -2.05 -43.40 16 16 O -1.01 -48.92 15.49 -128.00 -1.98 -50.90 16 17 N -1.00 -30.51 3.09 -488.65 -1.51 -32.02 16 18 C 0.08 1.86 6.17 86.35 0.53 2.39 16 19 C 0.05 0.96 6.98 72.08 0.50 1.47 16 20 O -0.38 -8.72 10.01 -148.98 -1.49 -10.21 16 21 C 0.08 2.08 3.11 30.84 0.10 2.18 16 22 H 0.05 1.54 6.64 -2.38 -0.02 1.52 16 23 C -0.14 -2.89 9.03 71.98 0.65 -2.24 16 24 C 0.11 3.29 2.79 45.11 0.13 3.42 16 25 H 0.08 2.72 7.24 -2.39 -0.02 2.70 16 26 C -0.15 -3.58 8.65 71.98 0.62 -2.96 16 27 H 0.04 1.74 6.66 -2.39 -0.02 1.72 16 28 H 0.03 1.28 6.64 -2.39 -0.02 1.27 16 29 H 0.07 3.37 6.07 -2.39 -0.01 3.36 16 30 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 31 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.08 2.14 7.79 -2.38 -0.02 2.12 16 33 H 0.08 2.57 6.43 -2.39 -0.02 2.55 16 34 H 0.10 2.14 7.25 -2.39 -0.02 2.12 16 35 H 0.09 1.79 7.65 -2.38 -0.02 1.77 16 36 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.08 1.40 6.38 -2.39 -0.02 1.38 16 39 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 41 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.09 1.75 6.45 -2.39 -0.02 1.74 16 43 H 0.07 1.60 7.21 -2.38 -0.02 1.58 16 Total: -1.00 -68.02 341.61 -0.56 -68.58 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 1.00 Total: 14.73 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: 5.17 Total: -10.13 kcal Atomic # 7 Polarization: -122.16 SS G_CDS: -2.89 Total: -125.05 kcal Atomic # 8 Polarization: -98.99 SS G_CDS: -5.52 Total: -104.51 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: 111.47 SS G_CDS: -0.34 Total: 111.13 kcal Total: -68.02 -0.56 -68.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407977431.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.606 kcal (2) G-P(sol) polarization free energy of solvation -68.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds